Ggra1898.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1898.t1
Unique NameGgra1898.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000181_piloncontigtig00000181_pilon:159791..160423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1898Ggra1898Gracilaria gracilis GNS1m malegenetig00000181_pilon 159791..160423 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1898.t1.stop1Ggra1898.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000181_pilon 159791..159793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1898.t1.CDS1Ggra1898.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000181_pilon 159791..160423 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1898.t1.exon1Ggra1898.t1.exon1Gracilaria gracilis GNS1m maleexontig00000181_pilon 159791..160423 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1898.t1.start1Ggra1898.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000181_pilon 160421..160423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1898.t1Ggra1898.t1Gracilaria gracilis GNS1m malepolypeptidetig00000181_pilon 159791..160423 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1898.t1 ID=Ggra1898.t1|Name=Ggra1898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MNPTARRYARELDLSFVFGSRTDKEELHSLSDIMDQTNWTLVPTNQNARE
KPRSDHFPGRTGPGGDFLWYYPWTSLQIDGEQAKNMCENPRAMPPTHSTG
FLFEPASVSSGVRVDELNEVEYDDEEMENADINEPVLAVDDDVEPVLVPV
SDTTPAPKALTSVVNEAELSVLKLFFIDFGVPFDQIPSGPQQMLSLLPNR
PGGSNLDTGS*
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spliced messenger RNA

>Ggra1898.t1 ID=Ggra1898.t1|Name=Ggra1898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000181_pilon:159791..160423- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGACAGCCAGACGTTATGCGAGAGAGCTCGATCTTTCCTTCGT
GTTTGGTTCACGCACTGACAAGGAAGAATTACACAGTTTGTCGGATATCA
TGGACCAGACCAACTGGACACTTGTCCCTACGAACCAGAATGCTCGAGAA
AAGCCTCGCTCGGATCACTTTCCTGGGAGGACAGGTCCCGGTGGCGACTT
TTTGTGGTACTATCCCTGGACGAGCCTGCAAATTGATGGCGAACAAGCCA
AAAATATGTGCGAGAATCCGCGAGCGATGCCACCCACTCACTCCACTGGT
TTTCTGTTCGAACCGGCCTCGGTAAGTTCGGGTGTACGGGTCGACGAGTT
AAACGAAGTCGAGTACGACGACGAGGAAATGGAGAATGCTGACATCAACG
AGCCAGTCCTAGCAGTGGATGACGACGTCGAGCCGGTCCTGGTCCCTGTG
TCGGACACGACTCCTGCGCCCAAAGCACTAACAAGTGTGGTGAACGAGGC
TGAGCTAAGTGTCCTGAAGCTTTTCTTCATCGACTTCGGTGTCCCGTTCG
ATCAGATTCCGAGCGGTCCGCAGCAGATGCTATCTCTTTTGCCCAATCGC
CCTGGCGGTAGCAATCTTGATACGGGTTCGTAA
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protein sequence of Ggra1898.t1

>Ggra1898.t1 ID=Ggra1898.t1|Name=Ggra1898.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MNPTARRYARELDLSFVFGSRTDKEELHSLSDIMDQTNWTLVPTNQNARE
KPRSDHFPGRTGPGGDFLWYYPWTSLQIDGEQAKNMCENPRAMPPTHSTG
FLFEPASVSSGVRVDELNEVEYDDEEMENADINEPVLAVDDDVEPVLVPV
SDTTPAPKALTSVVNEAELSVLKLFFIDFGVPFDQIPSGPQQMLSLLPNR
PGGSNLDTGS*
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mRNA from alignment at tig00000181_pilon:159791..160423-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1898.t1 ID=Ggra1898.t1|Name=Ggra1898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000181_pilon:159791..160423- (Gracilaria gracilis GNS1m male)
ATGAATCCGACAGCCAGACGTTATGCGAGAGAGCTCGATCTTTCCTTCGT
GTTTGGTTCACGCACTGACAAGGAAGAATTACACAGTTTGTCGGATATCA
TGGACCAGACCAACTGGACACTTGTCCCTACGAACCAGAATGCTCGAGAA
AAGCCTCGCTCGGATCACTTTCCTGGGAGGACAGGTCCCGGTGGCGACTT
TTTGTGGTACTATCCCTGGACGAGCCTGCAAATTGATGGCGAACAAGCCA
AAAATATGTGCGAGAATCCGCGAGCGATGCCACCCACTCACTCCACTGGT
TTTCTGTTCGAACCGGCCTCGGTAAGTTCGGGTGTACGGGTCGACGAGTT
AAACGAAGTCGAGTACGACGACGAGGAAATGGAGAATGCTGACATCAACG
AGCCAGTCCTAGCAGTGGATGACGACGTCGAGCCGGTCCTGGTCCCTGTG
TCGGACACGACTCCTGCGCCCAAAGCACTAACAAGTGTGGTGAACGAGGC
TGAGCTAAGTGTCCTGAAGCTTTTCTTCATCGACTTCGGTGTCCCGTTCG
ATCAGATTCCGAGCGGTCCGCAGCAGATGCTATCTCTTTTGCCCAATCGC
CCTGGCGGTAGCAATCTTGATACGGGTTCGTAA
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Coding sequence (CDS) from alignment at tig00000181_pilon:159791..160423-

>Ggra1898.t1 ID=Ggra1898.t1|Name=Ggra1898.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000181_pilon:159791..160423- (Gracilaria gracilis GNS1m male)
ATGAATCCGACAGCCAGACGTTATGCGAGAGAGCTCGATCTTTCCTTCGT
GTTTGGTTCACGCACTGACAAGGAAGAATTACACAGTTTGTCGGATATCA
TGGACCAGACCAACTGGACACTTGTCCCTACGAACCAGAATGCTCGAGAA
AAGCCTCGCTCGGATCACTTTCCTGGGAGGACAGGTCCCGGTGGCGACTT
TTTGTGGTACTATCCCTGGACGAGCCTGCAAATTGATGGCGAACAAGCCA
AAAATATGTGCGAGAATCCGCGAGCGATGCCACCCACTCACTCCACTGGT
TTTCTGTTCGAACCGGCCTCGGTAAGTTCGGGTGTACGGGTCGACGAGTT
AAACGAAGTCGAGTACGACGACGAGGAAATGGAGAATGCTGACATCAACG
AGCCAGTCCTAGCAGTGGATGACGACGTCGAGCCGGTCCTGGTCCCTGTG
TCGGACACGACTCCTGCGCCCAAAGCACTAACAAGTGTGGTGAACGAGGC
TGAGCTAAGTGTCCTGAAGCTTTTCTTCATCGACTTCGGTGTCCCGTTCG
ATCAGATTCCGAGCGGTCCGCAGCAGATGCTATCTCTTTTGCCCAATCGC
CCTGGCGGTAGCAATCTTGATACGGGTTCGTAA
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