Ggra1889.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1889.t1
Unique NameGgra1889.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000181_piloncontigtig00000181_pilon:95293..96063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX48299
Max annot lvl2759|Eukaryota
Evalue5.12e-19
EggNOG OGs2E786@1|root,2SDV8@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1889Ggra1889Gracilaria gracilis GNS1m malegenetig00000181_pilon 95293..96063 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1889.t1.stop1Ggra1889.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000181_pilon 95293..95295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1889.t1.CDS1Ggra1889.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000181_pilon 95293..96063 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1889.t1.exon1Ggra1889.t1.exon1Gracilaria gracilis GNS1m maleexontig00000181_pilon 95293..96063 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1889.t1.start1Ggra1889.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000181_pilon 96061..96063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1889.t1Ggra1889.t1Gracilaria gracilis GNS1m malepolypeptidetig00000181_pilon 95293..96063 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1889.t1 ID=Ggra1889.t1|Name=Ggra1889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MCACTRRTFLRTAPSLGALLLAESGDIQAELSALASKIPGAGMPDVFYPP
FFLGEWLVTRELYAVEVQPGADELAGHALLSHRAIDAQREMIGQRDSFPA
HFVLHRGHVIEDRQFNARAELDADNVSWDRTNPNVLSIAWGRTPGSTRIR
ECKITKRSFVDAPQGYGTFVSSEYARVVDVPSEAAFVTFSKKPSVYARRR
LVRYRVSSVTDNMQPDGMDRIVVDYIYPPSPPDAKYALLLKYRDFLNRRS
TNQLLQ*
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spliced messenger RNA

>Ggra1889.t1 ID=Ggra1889.t1|Name=Ggra1889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000181_pilon:95293..96063- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCTGCACGCGTCGCACCTTCCTGCGCACCGCCCCGTCGCTGGG
CGCGCTACTGCTGGCCGAGTCCGGCGACATCCAGGCCGAGCTGTCCGCGC
TGGCGTCCAAAATCCCCGGCGCTGGCATGCCGGACGTCTTCTACCCGCCC
TTCTTCCTGGGCGAGTGGCTCGTCACGCGTGAGCTGTACGCCGTCGAGGT
GCAGCCGGGCGCCGACGAACTCGCGGGCCATGCGCTCTTGTCGCACCGTG
CCATCGACGCGCAGCGCGAGATGATCGGCCAGCGCGACAGCTTTCCCGCC
CACTTTGTGCTCCATCGCGGCCACGTCATCGAGGATCGTCAGTTTAATGC
GCGCGCCGAGCTGGATGCTGATAATGTTTCGTGGGATCGCACCAATCCTA
ACGTGCTCAGTATTGCGTGGGGACGTACCCCGGGCTCCACGCGTATCAGG
GAGTGTAAGATCACCAAGCGTTCGTTTGTGGATGCTCCGCAGGGATATGG
TACTTTTGTGTCCAGTGAGTATGCCAGAGTTGTTGACGTCCCTTCGGAGG
CCGCTTTTGTAACCTTTTCTAAGAAGCCTAGCGTGTATGCACGCAGGAGA
TTGGTGCGATACAGGGTTAGCAGTGTCACTGATAACATGCAACCCGACGG
CATGGACCGCATAGTTGTAGATTACATTTACCCTCCGAGTCCACCAGACG
CAAAGTACGCCTTGCTGCTCAAGTACCGTGACTTTCTAAATAGGCGAAGC
ACAAACCAGCTCTTGCAATAA
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protein sequence of Ggra1889.t1

>Ggra1889.t1 ID=Ggra1889.t1|Name=Ggra1889.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MCACTRRTFLRTAPSLGALLLAESGDIQAELSALASKIPGAGMPDVFYPP
FFLGEWLVTRELYAVEVQPGADELAGHALLSHRAIDAQREMIGQRDSFPA
HFVLHRGHVIEDRQFNARAELDADNVSWDRTNPNVLSIAWGRTPGSTRIR
ECKITKRSFVDAPQGYGTFVSSEYARVVDVPSEAAFVTFSKKPSVYARRR
LVRYRVSSVTDNMQPDGMDRIVVDYIYPPSPPDAKYALLLKYRDFLNRRS
TNQLLQ*
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mRNA from alignment at tig00000181_pilon:95293..96063-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1889.t1 ID=Ggra1889.t1|Name=Ggra1889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000181_pilon:95293..96063- (Gracilaria gracilis GNS1m male)
ATGTGCGCCTGCACGCGTCGCACCTTCCTGCGCACCGCCCCGTCGCTGGG
CGCGCTACTGCTGGCCGAGTCCGGCGACATCCAGGCCGAGCTGTCCGCGC
TGGCGTCCAAAATCCCCGGCGCTGGCATGCCGGACGTCTTCTACCCGCCC
TTCTTCCTGGGCGAGTGGCTCGTCACGCGTGAGCTGTACGCCGTCGAGGT
GCAGCCGGGCGCCGACGAACTCGCGGGCCATGCGCTCTTGTCGCACCGTG
CCATCGACGCGCAGCGCGAGATGATCGGCCAGCGCGACAGCTTTCCCGCC
CACTTTGTGCTCCATCGCGGCCACGTCATCGAGGATCGTCAGTTTAATGC
GCGCGCCGAGCTGGATGCTGATAATGTTTCGTGGGATCGCACCAATCCTA
ACGTGCTCAGTATTGCGTGGGGACGTACCCCGGGCTCCACGCGTATCAGG
GAGTGTAAGATCACCAAGCGTTCGTTTGTGGATGCTCCGCAGGGATATGG
TACTTTTGTGTCCAGTGAGTATGCCAGAGTTGTTGACGTCCCTTCGGAGG
CCGCTTTTGTAACCTTTTCTAAGAAGCCTAGCGTGTATGCACGCAGGAGA
TTGGTGCGATACAGGGTTAGCAGTGTCACTGATAACATGCAACCCGACGG
CATGGACCGCATAGTTGTAGATTACATTTACCCTCCGAGTCCACCAGACG
CAAAGTACGCCTTGCTGCTCAAGTACCGTGACTTTCTAAATAGGCGAAGC
ACAAACCAGCTCTTGCAATAA
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Coding sequence (CDS) from alignment at tig00000181_pilon:95293..96063-

>Ggra1889.t1 ID=Ggra1889.t1|Name=Ggra1889.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000181_pilon:95293..96063- (Gracilaria gracilis GNS1m male)
ATGTGCGCCTGCACGCGTCGCACCTTCCTGCGCACCGCCCCGTCGCTGGG
CGCGCTACTGCTGGCCGAGTCCGGCGACATCCAGGCCGAGCTGTCCGCGC
TGGCGTCCAAAATCCCCGGCGCTGGCATGCCGGACGTCTTCTACCCGCCC
TTCTTCCTGGGCGAGTGGCTCGTCACGCGTGAGCTGTACGCCGTCGAGGT
GCAGCCGGGCGCCGACGAACTCGCGGGCCATGCGCTCTTGTCGCACCGTG
CCATCGACGCGCAGCGCGAGATGATCGGCCAGCGCGACAGCTTTCCCGCC
CACTTTGTGCTCCATCGCGGCCACGTCATCGAGGATCGTCAGTTTAATGC
GCGCGCCGAGCTGGATGCTGATAATGTTTCGTGGGATCGCACCAATCCTA
ACGTGCTCAGTATTGCGTGGGGACGTACCCCGGGCTCCACGCGTATCAGG
GAGTGTAAGATCACCAAGCGTTCGTTTGTGGATGCTCCGCAGGGATATGG
TACTTTTGTGTCCAGTGAGTATGCCAGAGTTGTTGACGTCCCTTCGGAGG
CCGCTTTTGTAACCTTTTCTAAGAAGCCTAGCGTGTATGCACGCAGGAGA
TTGGTGCGATACAGGGTTAGCAGTGTCACTGATAACATGCAACCCGACGG
CATGGACCGCATAGTTGTAGATTACATTTACCCTCCGAGTCCACCAGACG
CAAAGTACGCCTTGCTGCTCAAGTACCGTGACTTTCTAAATAGGCGAAGC
ACAAACCAGCTCTTGCAATAA
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