Ggra1867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1867.t1
Unique Name	Ggra1867.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	778

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000907_pilon	contig	tig00000907_pilon:108446..110779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000014655
PFAMs	HMG_box,SNF5
Max annot lvl	121069\|Pythiales
Evalue	9.41e-10
EggNOG OGs	KOG1649@1\|root,KOG1649@2759\|Eukaryota,1MEHU@121069\|Pythiales
Description	Source PGD
COG category	BK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1867	Ggra1867	Gracilaria gracilis GNS1m male	gene	tig00000907_pilon 108446..110779 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1867.t1.start1	Ggra1867.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000907_pilon 108446..108448 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1867.t1.CDS1	Ggra1867.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000907_pilon 108446..110779 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1867.t1.exon1	Ggra1867.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000907_pilon 108446..110779 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1867.t1.stop1	Ggra1867.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000907_pilon 110777..110779 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1867.t1	Ggra1867.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000907_pilon 108446..110779 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000907_pilon:108446..110779+
coding sequence from alignment at tig00000907_pilon:108446..110779+

mRNA sequence

>Ggra1867.t1 ID=Ggra1867.t1|Name=Ggra1867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=778bp
MRGSTANMPSEEALREMMRAAAATASAAAGDASVAAAAVTSSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVEGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTTVAPHRSTQSTPSAQPVATNVTDSRPPVPPPPPPQLQPAPWTRPP
PPPPPPSLPPSTSVSPTSKPAKTGAPDADKVADADKSTDQEKPSDQDQAT
PTGKLRRAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSV
LAVEKAYHALVAPKWTGEFAEAEPLLIPIELYVTIGENTLHMYTQWDVNE
RQLAPENVADYIRRARKLPEEFVLPIAFQIRRNLFEAGVICPPPPDISEA
ENRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSVNSPELFAQLLCTDANI
SPKHVPEVSRALRKQLVRAHAIAFGDEETRKLAQRDLAEDDPLREKLPPV
GSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKK
AAEERLRHELEIVRRIELAELAKRNADIEQARKEVEEEAVQVYQHRNLDF
RPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKNTGHNIVFSR
IAKRRRPGIRKGHDEKTLGRASEKSEIHVAKKQKTEPTIYAGKTLSSSDN
KEVMLKLRVRSPDNAAQKKTPVPKRRR*

spliced messenger RNA

>Ggra1867.t1 ID=Ggra1867.t1|Name=Ggra1867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2334bp|location=Sequence derived from alignment at tig00000907_pilon:108446..110779+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGTTCTACAGCTAATATGCCTTCGGAAGAGGCTTTGCGCGAGAT
GATGCGcgccgctgccgccactgcttccgccgctgccggcgatgcatctg
tcgctgcagccgcAGTTACTTCATCAGAAGCTACCCGCTATGTTCGCCAT
TCTACCGGCCGCTCTTCGGCAAATCGCCGCCAGAGTATTAGCATGCTTCC
GCCAACCCTCGGCGGTGAACAGTTTCGCCAAGGCGCCCCATTGCCTCCCG
TTGAAGGCGGTGTTCGATGGAAGAAAATTCAAGCCGTCGCGCGAGAGATT
GCAGCCAAGTGGACCCATCCTCCCGGCTCGTCGCAGTACGAAACACCCAC
GCTTCATAATGTGCGTGCCATTCTCTACATGAACAAGAGTCTCATAACAC
AATCTTTTGTGTCGCACGTTTCTGGCGTCTCGCAAGGTAGCTTGAGCCAT
TACGTGCGCGGGCTCTTTCGCGGAAATCAGAAGAATGTCGATGACCGACT
TGCCATTTTCGTCGAGAAGTTTGCCGAGGGACATCTGGATAAGTTCCTGG
AGGAGGCACGCTCCGGAACTCGCCCCATTGGCCGCCCAGCGTTTTACGAT
TCTCTCAACCTTACAACCGTTGCACCTCACAGATCCACTCAATCCACCCC
ATCTGCCCAACCTGTCGCAACTAATGTTACCGATAGTCGTCCCCCAGTAC
CTCCGCCACCGCCCCCTCAGTTACAACCGGCGCCTTGGACACGCCCGCCG
CCACCGCCGCCCCCTCCATCACTTCCGCCGAGCACATCAGTGTCTCCTAC
TTCAAAACCAGCGAAGACGGGAGCACCAGACGCCGACAAAGTCGCGGATG
CTGACAAGTCCACTGACCAAGAGAAACCATCAGATCAAGATCAAGCTACG
CCAACAGGAAAGTTGAGACGGGCAGAGGAGAAGCGTCTGAGCGAAAGAGC
TCGCCGTGCTCAGCAAAGGGCTCAGAAGCAGAGGTCAGGGAAACGCCCTC
GTCCGGTTTTTCCGCCTATTCCAGAAGAAACTAAAGAGCCAACTTCTGTC
CTCGCTGTGGAGAAGGCCTACCATGCCTTGGTTGCTCCGAAATGGACAGG
CGAATTTGCGGAGGCTGAACCGCTGCTCATTCCTATCGAATTGTATGTAA
CCATTGGCGAGAATACCCTTCACATGTACACACAATGGGACGTGAACGAG
CGACAACTTGCCCCGGAAAACGTTGCTGATTATATCAGACGCGCTAGAAA
ACTTCCAGAAGAGTTCGTGTTGCCAATCGCGTTTCAAATTCGCCGAAATC
TGTTCGAAGCGGGTGTGATTTGCCCACCACCTCCTGATATTTCGGAAGCA
GAAAACCGCCGGTTGATCAAGATTGTGGTAGAACTTAAGGACGGTGACAC
AGTTCATGTTCTCCGAGACGAATTTGAATGGGATCTTGGATACGGGAGTG
TAAACTCTCCGGAACTCTTTGCACAGCTTCTCTGCACAGATGCTAACATA
TCTCCGAAACATGTCCCAGAGGTCTCCCGAGCATTGCGAAAGCAGCTTGT
GCGGGCTCATGCTATTGCTTTTGGAGATGAAGAAACAAGAAAGCTGGCCC
AGAGAGACTTGGCAGAAGATGACCCTCTCCGTGAGAAGCTTCCCCCCGTA
GGTTCTGCCTTGATAAAATGCACTGCGGAGGATATTCGTGTAAGGGATCG
CGAAGAAAACGAACTTGCAATTAGAAATCTCTTCGTCAGACCACTTTTGG
ATTCTATTCCGCTGGAGTCTGAACGACGCAAGGCAGAACGCGTGAAAAAA
GCGGCTGAAGAAAGGCTCAGACATGAACTTGAAATCGTTCGACGCATAGA
ATTAGCCGAGTTGGCGAAGAGAAATGCTGATATCGAACAAGCACGGAAGG
AAGTAGAGGAAGAAGCAGTTCAGGTTTATCAACACAGGAACTTAGATTTC
CGTCCGTACCTTAAACTACGGGTTGCACGGGACGAGAGCCCGAGTCTCTG
GATGCCTGCCGCGTTCGACAGAAGACGACGAAAGCAGCTCACATTTCCAA
TGACCCAACCCTCACGTAAGAACACTGGCCATAACATTGTATTCTCAAGA
ATTGCGAAAAGAAGAAGACCGGGAATTCGGAAGGGTCACGATGAAAAAAC
TTTAGGACGCGCGTCGGAAAAGAGCGAGATTCATGTTGCGAAAAAGCAGA
AGACGGAACCAACGATTTACGCAGGGAAGACATTGTCATCGAGCGACAAC
AAGGAAGTTATGCTTAAGCTTAGAGTACGAAGCCCAGATAATGCAGCTCA
GAAGAAGACGCCAGTTCCAAAACGTCGACGATGA

protein sequence of Ggra1867.t1

>Ggra1867.t1 ID=Ggra1867.t1|Name=Ggra1867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=778bp
MRGSTANMPSEEALREMMRAAAATASAAAGDASVAAAAVTSSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVEGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTTVAPHRSTQSTPSAQPVATNVTDSRPPVPPPPPPQLQPAPWTRPP
PPPPPPSLPPSTSVSPTSKPAKTGAPDADKVADADKSTDQEKPSDQDQAT
PTGKLRRAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSV
LAVEKAYHALVAPKWTGEFAEAEPLLIPIELYVTIGENTLHMYTQWDVNE
RQLAPENVADYIRRARKLPEEFVLPIAFQIRRNLFEAGVICPPPPDISEA
ENRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSVNSPELFAQLLCTDANI
SPKHVPEVSRALRKQLVRAHAIAFGDEETRKLAQRDLAEDDPLREKLPPV
GSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKK
AAEERLRHELEIVRRIELAELAKRNADIEQARKEVEEEAVQVYQHRNLDF
RPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKNTGHNIVFSR
IAKRRRPGIRKGHDEKTLGRASEKSEIHVAKKQKTEPTIYAGKTLSSSDN
KEVMLKLRVRSPDNAAQKKTPVPKRRR*

mRNA from alignment at tig00000907_pilon:108446..110779+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1867.t1 ID=Ggra1867.t1|Name=Ggra1867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2334bp|location=Sequence derived from alignment at tig00000907_pilon:108446..110779+ (Gracilaria gracilis GNS1m male)
ATGCGCGGTTCTACAGCTAATATGCCTTCGGAAGAGGCTTTGCGCGAGAT
GATGCGcgccgctgccgccactgcttccgccgctgccggcgatgcatctg
tcgctgcagccgcAGTTACTTCATCAGAAGCTACCCGCTATGTTCGCCAT
TCTACCGGCCGCTCTTCGGCAAATCGCCGCCAGAGTATTAGCATGCTTCC
GCCAACCCTCGGCGGTGAACAGTTTCGCCAAGGCGCCCCATTGCCTCCCG
TTGAAGGCGGTGTTCGATGGAAGAAAATTCAAGCCGTCGCGCGAGAGATT
GCAGCCAAGTGGACCCATCCTCCCGGCTCGTCGCAGTACGAAACACCCAC
GCTTCATAATGTGCGTGCCATTCTCTACATGAACAAGAGTCTCATAACAC
AATCTTTTGTGTCGCACGTTTCTGGCGTCTCGCAAGGTAGCTTGAGCCAT
TACGTGCGCGGGCTCTTTCGCGGAAATCAGAAGAATGTCGATGACCGACT
TGCCATTTTCGTCGAGAAGTTTGCCGAGGGACATCTGGATAAGTTCCTGG
AGGAGGCACGCTCCGGAACTCGCCCCATTGGCCGCCCAGCGTTTTACGAT
TCTCTCAACCTTACAACCGTTGCACCTCACAGATCCACTCAATCCACCCC
ATCTGCCCAACCTGTCGCAACTAATGTTACCGATAGTCGTCCCCCAGTAC
CTCCGCCACCGCCCCCTCAGTTACAACCGGCGCCTTGGACACGCCCGCCG
CCACCGCCGCCCCCTCCATCACTTCCGCCGAGCACATCAGTGTCTCCTAC
TTCAAAACCAGCGAAGACGGGAGCACCAGACGCCGACAAAGTCGCGGATG
CTGACAAGTCCACTGACCAAGAGAAACCATCAGATCAAGATCAAGCTACG
CCAACAGGAAAGTTGAGACGGGCAGAGGAGAAGCGTCTGAGCGAAAGAGC
TCGCCGTGCTCAGCAAAGGGCTCAGAAGCAGAGGTCAGGGAAACGCCCTC
GTCCGGTTTTTCCGCCTATTCCAGAAGAAACTAAAGAGCCAACTTCTGTC
CTCGCTGTGGAGAAGGCCTACCATGCCTTGGTTGCTCCGAAATGGACAGG
CGAATTTGCGGAGGCTGAACCGCTGCTCATTCCTATCGAATTGTATGTAA
CCATTGGCGAGAATACCCTTCACATGTACACACAATGGGACGTGAACGAG
CGACAACTTGCCCCGGAAAACGTTGCTGATTATATCAGACGCGCTAGAAA
ACTTCCAGAAGAGTTCGTGTTGCCAATCGCGTTTCAAATTCGCCGAAATC
TGTTCGAAGCGGGTGTGATTTGCCCACCACCTCCTGATATTTCGGAAGCA
GAAAACCGCCGGTTGATCAAGATTGTGGTAGAACTTAAGGACGGTGACAC
AGTTCATGTTCTCCGAGACGAATTTGAATGGGATCTTGGATACGGGAGTG
TAAACTCTCCGGAACTCTTTGCACAGCTTCTCTGCACAGATGCTAACATA
TCTCCGAAACATGTCCCAGAGGTCTCCCGAGCATTGCGAAAGCAGCTTGT
GCGGGCTCATGCTATTGCTTTTGGAGATGAAGAAACAAGAAAGCTGGCCC
AGAGAGACTTGGCAGAAGATGACCCTCTCCGTGAGAAGCTTCCCCCCGTA
GGTTCTGCCTTGATAAAATGCACTGCGGAGGATATTCGTGTAAGGGATCG
CGAAGAAAACGAACTTGCAATTAGAAATCTCTTCGTCAGACCACTTTTGG
ATTCTATTCCGCTGGAGTCTGAACGACGCAAGGCAGAACGCGTGAAAAAA
GCGGCTGAAGAAAGGCTCAGACATGAACTTGAAATCGTTCGACGCATAGA
ATTAGCCGAGTTGGCGAAGAGAAATGCTGATATCGAACAAGCACGGAAGG
AAGTAGAGGAAGAAGCAGTTCAGGTTTATCAACACAGGAACTTAGATTTC
CGTCCGTACCTTAAACTACGGGTTGCACGGGACGAGAGCCCGAGTCTCTG
GATGCCTGCCGCGTTCGACAGAAGACGACGAAAGCAGCTCACATTTCCAA
TGACCCAACCCTCACGTAAGAACACTGGCCATAACATTGTATTCTCAAGA
ATTGCGAAAAGAAGAAGACCGGGAATTCGGAAGGGTCACGATGAAAAAAC
TTTAGGACGCGCGTCGGAAAAGAGCGAGATTCATGTTGCGAAAAAGCAGA
AGACGGAACCAACGATTTACGCAGGGAAGACATTGTCATCGAGCGACAAC
AAGGAAGTTATGCTTAAGCTTAGAGTACGAAGCCCAGATAATGCAGCTCA
GAAGAAGACGCCAGTTCCAAAACGTCGACGATGA

Coding sequence (CDS) from alignment at tig00000907_pilon:108446..110779+

>Ggra1867.t1 ID=Ggra1867.t1|Name=Ggra1867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2334bp|location=Sequence derived from alignment at tig00000907_pilon:108446..110779+ (Gracilaria gracilis GNS1m male)
ATGCGCGGTTCTACAGCTAATATGCCTTCGGAAGAGGCTTTGCGCGAGAT
GATGCGcgccgctgccgccactgcttccgccgctgccggcgatgcatctg
tcgctgcagccgcAGTTACTTCATCAGAAGCTACCCGCTATGTTCGCCAT
TCTACCGGCCGCTCTTCGGCAAATCGCCGCCAGAGTATTAGCATGCTTCC
GCCAACCCTCGGCGGTGAACAGTTTCGCCAAGGCGCCCCATTGCCTCCCG
TTGAAGGCGGTGTTCGATGGAAGAAAATTCAAGCCGTCGCGCGAGAGATT
GCAGCCAAGTGGACCCATCCTCCCGGCTCGTCGCAGTACGAAACACCCAC
GCTTCATAATGTGCGTGCCATTCTCTACATGAACAAGAGTCTCATAACAC
AATCTTTTGTGTCGCACGTTTCTGGCGTCTCGCAAGGTAGCTTGAGCCAT
TACGTGCGCGGGCTCTTTCGCGGAAATCAGAAGAATGTCGATGACCGACT
TGCCATTTTCGTCGAGAAGTTTGCCGAGGGACATCTGGATAAGTTCCTGG
AGGAGGCACGCTCCGGAACTCGCCCCATTGGCCGCCCAGCGTTTTACGAT
TCTCTCAACCTTACAACCGTTGCACCTCACAGATCCACTCAATCCACCCC
ATCTGCCCAACCTGTCGCAACTAATGTTACCGATAGTCGTCCCCCAGTAC
CTCCGCCACCGCCCCCTCAGTTACAACCGGCGCCTTGGACACGCCCGCCG
CCACCGCCGCCCCCTCCATCACTTCCGCCGAGCACATCAGTGTCTCCTAC
TTCAAAACCAGCGAAGACGGGAGCACCAGACGCCGACAAAGTCGCGGATG
CTGACAAGTCCACTGACCAAGAGAAACCATCAGATCAAGATCAAGCTACG
CCAACAGGAAAGTTGAGACGGGCAGAGGAGAAGCGTCTGAGCGAAAGAGC
TCGCCGTGCTCAGCAAAGGGCTCAGAAGCAGAGGTCAGGGAAACGCCCTC
GTCCGGTTTTTCCGCCTATTCCAGAAGAAACTAAAGAGCCAACTTCTGTC
CTCGCTGTGGAGAAGGCCTACCATGCCTTGGTTGCTCCGAAATGGACAGG
CGAATTTGCGGAGGCTGAACCGCTGCTCATTCCTATCGAATTGTATGTAA
CCATTGGCGAGAATACCCTTCACATGTACACACAATGGGACGTGAACGAG
CGACAACTTGCCCCGGAAAACGTTGCTGATTATATCAGACGCGCTAGAAA
ACTTCCAGAAGAGTTCGTGTTGCCAATCGCGTTTCAAATTCGCCGAAATC
TGTTCGAAGCGGGTGTGATTTGCCCACCACCTCCTGATATTTCGGAAGCA
GAAAACCGCCGGTTGATCAAGATTGTGGTAGAACTTAAGGACGGTGACAC
AGTTCATGTTCTCCGAGACGAATTTGAATGGGATCTTGGATACGGGAGTG
TAAACTCTCCGGAACTCTTTGCACAGCTTCTCTGCACAGATGCTAACATA
TCTCCGAAACATGTCCCAGAGGTCTCCCGAGCATTGCGAAAGCAGCTTGT
GCGGGCTCATGCTATTGCTTTTGGAGATGAAGAAACAAGAAAGCTGGCCC
AGAGAGACTTGGCAGAAGATGACCCTCTCCGTGAGAAGCTTCCCCCCGTA
GGTTCTGCCTTGATAAAATGCACTGCGGAGGATATTCGTGTAAGGGATCG
CGAAGAAAACGAACTTGCAATTAGAAATCTCTTCGTCAGACCACTTTTGG
ATTCTATTCCGCTGGAGTCTGAACGACGCAAGGCAGAACGCGTGAAAAAA
GCGGCTGAAGAAAGGCTCAGACATGAACTTGAAATCGTTCGACGCATAGA
ATTAGCCGAGTTGGCGAAGAGAAATGCTGATATCGAACAAGCACGGAAGG
AAGTAGAGGAAGAAGCAGTTCAGGTTTATCAACACAGGAACTTAGATTTC
CGTCCGTACCTTAAACTACGGGTTGCACGGGACGAGAGCCCGAGTCTCTG
GATGCCTGCCGCGTTCGACAGAAGACGACGAAAGCAGCTCACATTTCCAA
TGACCCAACCCTCACGTAAGAACACTGGCCATAACATTGTATTCTCAAGA
ATTGCGAAAAGAAGAAGACCGGGAATTCGGAAGGGTCACGATGAAAAAAC
TTTAGGACGCGCGTCGGAAAAGAGCGAGATTCATGTTGCGAAAAAGCAGA
AGACGGAACCAACGATTTACGCAGGGAAGACATTGTCATCGAGCGACAAC
AAGGAAGTTATGCTTAAGCTTAGAGTACGAAGCCCAGATAATGCAGCTCA
GAAGAAGACGCCAGTTCCAAAACGTCGACGATGA