Ggra1860.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1860.t1
Unique Name	Ggra1860.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:968471..970342 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708989.1
PFAMs	CTP_synth_N,GATase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010,RC00074
KEGG ko	ko:K01937
KEGG Reaction	R00571,R00573
KEGG Pathway	ko00240,ko01100,map00240,map01100
KEGG Module	M00052
GOs	GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	1.03e-270
EggNOG OGs	COG0504@1\|root,KOG2387@2759\|Eukaryota
EC	6.3.4.2
Description	'de novo' CTP biosynthetic process
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1860	Ggra1860	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 968471..970342 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1860.t1.start1	Ggra1860.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 968471..968473 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1860.t1.CDS1	Ggra1860.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 968471..970342 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1860.t1.exon1	Ggra1860.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 968471..970342 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1860.t1.stop1	Ggra1860.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 970340..970342 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1860.t1	Ggra1860.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 968471..970342 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:968471..970342+
coding sequence from alignment at tig00000050_pilon:968471..970342+

mRNA sequence

>Ggra1860.t1 ID=Ggra1860.t1|Name=Ggra1860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp
MLPSGLPANGAAPHVKFVLVSGGVISGIGKGLTASSLGVLLKCCGWRVTA
IKIDPYLNLDAGTMSPFEHGEVFVLHDGGEVDLDLGNYERFLDVMLTRDN
NITTGKVYSNVLEMERRGEYLGKTVQVVPHITDAIQRWIMRVATTPDRNG
LVPEICVIELGGTIGDIESMPFVEALRQLRYNVGDVNFCSVFVSLVPILG
VVGEQKTKPTQHGVKQITSMGLSPQLIVCRSEVPLLPETKKKLALFCQVA
PDAVASVHDVSNTYRIPMMLQEQGVCNLLIRTLQLVWRLPVRLEKWARMA
NKVDERCQHVNICIVGKYTGLSDAYLSVVRALEHAGMAMGRQVDVTWVES
TDLECAPGAEATRSVAAKAKNGALVAECNGSRSPAQSGSSASGGEGTEAA
WEVIRRADGILVPGGFGDRGVEGKMAAIRYARDNKVPFLGICLGMQLAVV
EAARRMFKGQLVDSEEINKHADVKAVVYMPEVDKSKMGGTMRLGTRKTIL
RRDDCIASWLYGATEIYERHRHRYEVNPDIVSEMEEKDSLRFVGVDSSGQ
RMEILEDSEHPFFFGTQFHPEFTSRPGRPSPPFVGLIRAAAGMALGRDAI
QRAMRNIRQQDPWGDDAADFEEV*

spliced messenger RNA

>Ggra1860.t1 ID=Ggra1860.t1|Name=Ggra1860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000050_pilon:968471..970342+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCTCTGGTCTCCCCGCCAACGGCGCCGCGCCGCACGTCAAGTT
CGTGCTGGTCTCCGGCGGCGTCATCTCCGGCATCGGCAAGGGGCTCACCG
CGTCCTCGCTGGGCGTTCTGCTCAAGTGCTGTGGCTGGCGTGTCACCGCC
ATCAAGATCGACCCGTACCTCAACCTGGATGCCGGCACCATGTCCCCCTT
CGAGCACGGCGAGGTGTTCGTTCTGCACGACGGCGGCGAGGTCGACCTAG
ACCTCGGCAACTACGAGCGCTTTCTGGACGTCATGCTCACGCGCGACAAC
AATATCACCACAGGAAAGGTTTATTCCAACGTGCTGGAGATGGAGCGCCG
CGGGGAGTATCTGGGAAAAACCGTGCAAGTCGTGCCGCACATCACTGACG
CCATCCAGCGCTGGATCATGCGCGTCGCCACCACGCCAGACCGCAACGGG
CTTGTGCCAGAGATCTGTGTCATCGAGCTTGGCGGCACAATTGGCGACAT
CGAGTCCATGCCGTTCGTCGAAGCGCTCCGCCAGCTACGCTACAACGTCG
GCGACGTCAACTTCTGCTCCGTGTTCGTGTCGCTAGTGCCCATTCTCGGC
GTGGTGGGCGAACAGAAGACAAAGCCCACGCAGCACGGCGTGAAGCAGAT
CACGTCGATGGGGCTGTCGCCGCAGCTCATTGTGTGTCGCTCCGAGGTGC
CGCTGCTGCCGGAGACGAAGAAGAAGCTGGCACTGTTCTGTCAGGTGGCG
CCGGACGCGGTGGCTTCCGTGCATGACGTGTCCAACACGTACCGCATCCC
CATGATGCTGCAGGAGCAGGGCGTGTGCAACCTGCTCATTCGCACGCTGC
AGCTGGTGTGGCGACTGCCGGTGCGGCTGGAGAAGTGGGCGCGCATGGCA
AACAAGGTGGATGAACGTTGCCAACACGTGAACATCTGCATTGTGGGTAA
GTACACCGGGCTGTCGGACGCGTACCTGTCGGTGGTGCGCGCGCTGGAAC
ACGCTGGCATGGCGATGGGACGACAGGTGGACGTCACGTGGGTAGAGTCC
ACCGACCTGGAGTGCGCGCCTGGAGCGGAGGCGACGCGGAGTGTGGCAGC
AAAGGCAAAGAACGGCGCGCTGGTGGCGGAGTGTAACGGGTCGCGTTCGC
CGGCGCAATCCGGCTCTAGCGCGTCGGGGGGCGAGGGCACGGAGGCGGCG
TGGGAGGTGATACGACGCGCGGACGGCATCCTGGTGCCGGGCGGGTTTGG
CGACCGCGGGGTGGAGGGTAAGATGGCGGCGATTCGATACGCGAGGGATA
ACAAGGTGCCGTTTCTGGGGATCTGTCTGGGGATGCAGCTCGCGGTGGTG
GAGGCGGCGCGACGCATGTTCAAGGGGCAGCTGGTGGATTCGGAGGAGAT
CAATAAGCACGCGGATGTGAAGGCGGTGGTGTACATGCCCGAGGTGGATA
AGAGCAAGATGGGCGGCACGATGCGACTGGGCACGCGCAAGACGATACTG
CGAAGAGACGATTGTATAGCGTCGTGGCTATATGGCGCTACGGAGATCTA
CGAGCGACACCGACACCGGTATGAGGTGAACCCGGACATTGTGAGCGAGA
TGGAGGAGAAGGACAGCCTGCGCTTCGTGGGCGTAGACAGCAGCGGGCAG
CGCATGGAGATCTTGGAGGACAGCGAGCACCCGTTCTTCTTCGGCACGCA
GTTCCACCCGGAGTTCACCAGCCGGCCTGGACGCCCGTCGCCGCCGTTCG
TGGGGCTGATCCGCGCGGCGGCGGGGATGGCGCTCGGGCGCGACGCCATC
CAGCGCGCCATGCGCAACATCCGCCAGCAGGACCCGTGGGGCGACGACGC
TGCCGATTTTGAAGAAGTGTGA

protein sequence of Ggra1860.t1

>Ggra1860.t1 ID=Ggra1860.t1|Name=Ggra1860.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MLPSGLPANGAAPHVKFVLVSGGVISGIGKGLTASSLGVLLKCCGWRVTA
IKIDPYLNLDAGTMSPFEHGEVFVLHDGGEVDLDLGNYERFLDVMLTRDN
NITTGKVYSNVLEMERRGEYLGKTVQVVPHITDAIQRWIMRVATTPDRNG
LVPEICVIELGGTIGDIESMPFVEALRQLRYNVGDVNFCSVFVSLVPILG
VVGEQKTKPTQHGVKQITSMGLSPQLIVCRSEVPLLPETKKKLALFCQVA
PDAVASVHDVSNTYRIPMMLQEQGVCNLLIRTLQLVWRLPVRLEKWARMA
NKVDERCQHVNICIVGKYTGLSDAYLSVVRALEHAGMAMGRQVDVTWVES
TDLECAPGAEATRSVAAKAKNGALVAECNGSRSPAQSGSSASGGEGTEAA
WEVIRRADGILVPGGFGDRGVEGKMAAIRYARDNKVPFLGICLGMQLAVV
EAARRMFKGQLVDSEEINKHADVKAVVYMPEVDKSKMGGTMRLGTRKTIL
RRDDCIASWLYGATEIYERHRHRYEVNPDIVSEMEEKDSLRFVGVDSSGQ
RMEILEDSEHPFFFGTQFHPEFTSRPGRPSPPFVGLIRAAAGMALGRDAI
QRAMRNIRQQDPWGDDAADFEEV*

mRNA from alignment at tig00000050_pilon:968471..970342+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1860.t1 ID=Ggra1860.t1|Name=Ggra1860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000050_pilon:968471..970342+ (Gracilaria gracilis GNS1m male)
ATGCTTCCCTCTGGTCTCCCCGCCAACGGCGCCGCGCCGCACGTCAAGTT
CGTGCTGGTCTCCGGCGGCGTCATCTCCGGCATCGGCAAGGGGCTCACCG
CGTCCTCGCTGGGCGTTCTGCTCAAGTGCTGTGGCTGGCGTGTCACCGCC
ATCAAGATCGACCCGTACCTCAACCTGGATGCCGGCACCATGTCCCCCTT
CGAGCACGGCGAGGTGTTCGTTCTGCACGACGGCGGCGAGGTCGACCTAG
ACCTCGGCAACTACGAGCGCTTTCTGGACGTCATGCTCACGCGCGACAAC
AATATCACCACAGGAAAGGTTTATTCCAACGTGCTGGAGATGGAGCGCCG
CGGGGAGTATCTGGGAAAAACCGTGCAAGTCGTGCCGCACATCACTGACG
CCATCCAGCGCTGGATCATGCGCGTCGCCACCACGCCAGACCGCAACGGG
CTTGTGCCAGAGATCTGTGTCATCGAGCTTGGCGGCACAATTGGCGACAT
CGAGTCCATGCCGTTCGTCGAAGCGCTCCGCCAGCTACGCTACAACGTCG
GCGACGTCAACTTCTGCTCCGTGTTCGTGTCGCTAGTGCCCATTCTCGGC
GTGGTGGGCGAACAGAAGACAAAGCCCACGCAGCACGGCGTGAAGCAGAT
CACGTCGATGGGGCTGTCGCCGCAGCTCATTGTGTGTCGCTCCGAGGTGC
CGCTGCTGCCGGAGACGAAGAAGAAGCTGGCACTGTTCTGTCAGGTGGCG
CCGGACGCGGTGGCTTCCGTGCATGACGTGTCCAACACGTACCGCATCCC
CATGATGCTGCAGGAGCAGGGCGTGTGCAACCTGCTCATTCGCACGCTGC
AGCTGGTGTGGCGACTGCCGGTGCGGCTGGAGAAGTGGGCGCGCATGGCA
AACAAGGTGGATGAACGTTGCCAACACGTGAACATCTGCATTGTGGGTAA
GTACACCGGGCTGTCGGACGCGTACCTGTCGGTGGTGCGCGCGCTGGAAC
ACGCTGGCATGGCGATGGGACGACAGGTGGACGTCACGTGGGTAGAGTCC
ACCGACCTGGAGTGCGCGCCTGGAGCGGAGGCGACGCGGAGTGTGGCAGC
AAAGGCAAAGAACGGCGCGCTGGTGGCGGAGTGTAACGGGTCGCGTTCGC
CGGCGCAATCCGGCTCTAGCGCGTCGGGGGGCGAGGGCACGGAGGCGGCG
TGGGAGGTGATACGACGCGCGGACGGCATCCTGGTGCCGGGCGGGTTTGG
CGACCGCGGGGTGGAGGGTAAGATGGCGGCGATTCGATACGCGAGGGATA
ACAAGGTGCCGTTTCTGGGGATCTGTCTGGGGATGCAGCTCGCGGTGGTG
GAGGCGGCGCGACGCATGTTCAAGGGGCAGCTGGTGGATTCGGAGGAGAT
CAATAAGCACGCGGATGTGAAGGCGGTGGTGTACATGCCCGAGGTGGATA
AGAGCAAGATGGGCGGCACGATGCGACTGGGCACGCGCAAGACGATACTG
CGAAGAGACGATTGTATAGCGTCGTGGCTATATGGCGCTACGGAGATCTA
CGAGCGACACCGACACCGGTATGAGGTGAACCCGGACATTGTGAGCGAGA
TGGAGGAGAAGGACAGCCTGCGCTTCGTGGGCGTAGACAGCAGCGGGCAG
CGCATGGAGATCTTGGAGGACAGCGAGCACCCGTTCTTCTTCGGCACGCA
GTTCCACCCGGAGTTCACCAGCCGGCCTGGACGCCCGTCGCCGCCGTTCG
TGGGGCTGATCCGCGCGGCGGCGGGGATGGCGCTCGGGCGCGACGCCATC
CAGCGCGCCATGCGCAACATCCGCCAGCAGGACCCGTGGGGCGACGACGC
TGCCGATTTTGAAGAAGTGTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:968471..970342+

>Ggra1860.t1 ID=Ggra1860.t1|Name=Ggra1860.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00000050_pilon:968471..970342+ (Gracilaria gracilis GNS1m male)
ATGCTTCCCTCTGGTCTCCCCGCCAACGGCGCCGCGCCGCACGTCAAGTT
CGTGCTGGTCTCCGGCGGCGTCATCTCCGGCATCGGCAAGGGGCTCACCG
CGTCCTCGCTGGGCGTTCTGCTCAAGTGCTGTGGCTGGCGTGTCACCGCC
ATCAAGATCGACCCGTACCTCAACCTGGATGCCGGCACCATGTCCCCCTT
CGAGCACGGCGAGGTGTTCGTTCTGCACGACGGCGGCGAGGTCGACCTAG
ACCTCGGCAACTACGAGCGCTTTCTGGACGTCATGCTCACGCGCGACAAC
AATATCACCACAGGAAAGGTTTATTCCAACGTGCTGGAGATGGAGCGCCG
CGGGGAGTATCTGGGAAAAACCGTGCAAGTCGTGCCGCACATCACTGACG
CCATCCAGCGCTGGATCATGCGCGTCGCCACCACGCCAGACCGCAACGGG
CTTGTGCCAGAGATCTGTGTCATCGAGCTTGGCGGCACAATTGGCGACAT
CGAGTCCATGCCGTTCGTCGAAGCGCTCCGCCAGCTACGCTACAACGTCG
GCGACGTCAACTTCTGCTCCGTGTTCGTGTCGCTAGTGCCCATTCTCGGC
GTGGTGGGCGAACAGAAGACAAAGCCCACGCAGCACGGCGTGAAGCAGAT
CACGTCGATGGGGCTGTCGCCGCAGCTCATTGTGTGTCGCTCCGAGGTGC
CGCTGCTGCCGGAGACGAAGAAGAAGCTGGCACTGTTCTGTCAGGTGGCG
CCGGACGCGGTGGCTTCCGTGCATGACGTGTCCAACACGTACCGCATCCC
CATGATGCTGCAGGAGCAGGGCGTGTGCAACCTGCTCATTCGCACGCTGC
AGCTGGTGTGGCGACTGCCGGTGCGGCTGGAGAAGTGGGCGCGCATGGCA
AACAAGGTGGATGAACGTTGCCAACACGTGAACATCTGCATTGTGGGTAA
GTACACCGGGCTGTCGGACGCGTACCTGTCGGTGGTGCGCGCGCTGGAAC
ACGCTGGCATGGCGATGGGACGACAGGTGGACGTCACGTGGGTAGAGTCC
ACCGACCTGGAGTGCGCGCCTGGAGCGGAGGCGACGCGGAGTGTGGCAGC
AAAGGCAAAGAACGGCGCGCTGGTGGCGGAGTGTAACGGGTCGCGTTCGC
CGGCGCAATCCGGCTCTAGCGCGTCGGGGGGCGAGGGCACGGAGGCGGCG
TGGGAGGTGATACGACGCGCGGACGGCATCCTGGTGCCGGGCGGGTTTGG
CGACCGCGGGGTGGAGGGTAAGATGGCGGCGATTCGATACGCGAGGGATA
ACAAGGTGCCGTTTCTGGGGATCTGTCTGGGGATGCAGCTCGCGGTGGTG
GAGGCGGCGCGACGCATGTTCAAGGGGCAGCTGGTGGATTCGGAGGAGAT
CAATAAGCACGCGGATGTGAAGGCGGTGGTGTACATGCCCGAGGTGGATA
AGAGCAAGATGGGCGGCACGATGCGACTGGGCACGCGCAAGACGATACTG
CGAAGAGACGATTGTATAGCGTCGTGGCTATATGGCGCTACGGAGATCTA
CGAGCGACACCGACACCGGTATGAGGTGAACCCGGACATTGTGAGCGAGA
TGGAGGAGAAGGACAGCCTGCGCTTCGTGGGCGTAGACAGCAGCGGGCAG
CGCATGGAGATCTTGGAGGACAGCGAGCACCCGTTCTTCTTCGGCACGCA
GTTCCACCCGGAGTTCACCAGCCGGCCTGGACGCCCGTCGCCGCCGTTCG
TGGGGCTGATCCGCGCGGCGGCGGGGATGGCGCTCGGGCGCGACGCCATC
CAGCGCGCCATGCGCAACATCCGCCAGCAGGACCCGTGGGGCGACGACGC
TGCCGATTTTGAAGAAGTGTGA