Ggra1856.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1856.t1
Unique NameGgra1856.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:960113..961120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1856Ggra1856Gracilaria gracilis GNS1m malegenetig00000050_pilon 960113..961120 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1856.t1.stop1Ggra1856.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 960113..960115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1856.t1.CDS1Ggra1856.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 960113..961120 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1856.t1.exon1Ggra1856.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 960113..961120 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1856.t1.start1Ggra1856.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 961118..961120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1856.t1Ggra1856.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 960113..961120 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1856.t1 ID=Ggra1856.t1|Name=Ggra1856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MSRKKKSKANKAPASAQLRQLPDECSRLSETEHHQGHQSGAPPQSAPQIA
PKLKQEPQVIDLDASLISKPEPTLPSLHNLQHPTRLDQPNTAAQSAEHRS
HGAEAAQSPHKQKASAKKKPKKSAARKQKRKSGQATPASNSSKKRRRPNQ
IHPANGQPNEPPAKLQRISDQPCGDPPSAPLRNPGEKTMLCETVVQKDGD
THVIVTTKEQYPTAVRCPCDIGCGSLVRVGNYAKYCQVGTPFCPHCRSVI
GSEHGFNSYPQLVAHVKTKTCKSVQQAQPPNFNPRRVLGDEVYNKINNPV
NSIFKNGIAYFKCFHCAMEVDRTIRFHHCLKCFGH*
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spliced messenger RNA

>Ggra1856.t1 ID=Ggra1856.t1|Name=Ggra1856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000050_pilon:960113..961120- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGGAAGAAAAAGTCAAAGGCAAACAAAGCGCCGGCCAGCGCGCA
GTTGCGCCAACTTCCGGACGAATGCTCCCGCCTCAGTGAAACCGAACACC
ATCAGGGTCATCAGAGTGGTGCGCCGCCGCAATCGGCGCCACAGATTGCG
CCCAAGCTCAAGCAAGAGCCTCAAGTCATCGACTTGGACGCGTCCTTGAT
TTCCAAGCCGGAGCCGACGCTGCCGTCCCTGCACAATCTTCAACACCCCA
CCCGCCTCGACCAACCAAACACTGCGGCTCAGTCTGCCGAGCACCGCTCC
CATGGCGCTGAGGCTGCTCAATCGCCTCACAAACAAAAAGCGTCCGCGAA
GAAAAAGCCCAAAAAGTCTGCTGCTCGCAAACAAAAACGCAAGTCGGGCC
AGGCCACCCCGGCTTCAAACTCGTCCAAGAAGCGGAGACGACCAAATCAA
ATCCACCCTGCGAATGGCCAACCTAATGAACCGCCCGCCAAACTTCAGCG
AATATCTGACCAACCTTGCGGCGATCCTCCTTCTGCCCCGCTGAGAAACC
CTGGTGAGAAGACGATGCTCTGCGAAACCGTCGTGCAGAAAGACGGTGAC
ACGCATGTCATTGTCACCACCAAAGAGCAGTATCCCACCGCCGTCAGATG
CCCGTGCGACATCGGTTGTGGCAGCCTTGTGCGCGTTGGAAACTACGCCA
AGTATTGCCAAGTCGGCACTCCGTTTTGTCCGCATTGTCGCAGCGTTATC
GGAAGCGAACATGGTTTCAATTCCTACCCTCAGCTCGTTGCTCACGTCAA
AACAAAGACATGTAAATCTGTTCAGCAAGCTCAGCCACCAAACTTCAACC
CCAGAAGAGTCCTCGGTGATGAGGTATATAATAAGATCAATAATCCTGTC
AACAGCATATTCAAGAACGGTATAGCATATTTCAAATGCTTTCATTGTGC
AATGGAAGTTGACCGTACTATTAGATTCCATCATTGTTTGAAATGCTTCG
GCCATTAA
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protein sequence of Ggra1856.t1

>Ggra1856.t1 ID=Ggra1856.t1|Name=Ggra1856.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MSRKKKSKANKAPASAQLRQLPDECSRLSETEHHQGHQSGAPPQSAPQIA
PKLKQEPQVIDLDASLISKPEPTLPSLHNLQHPTRLDQPNTAAQSAEHRS
HGAEAAQSPHKQKASAKKKPKKSAARKQKRKSGQATPASNSSKKRRRPNQ
IHPANGQPNEPPAKLQRISDQPCGDPPSAPLRNPGEKTMLCETVVQKDGD
THVIVTTKEQYPTAVRCPCDIGCGSLVRVGNYAKYCQVGTPFCPHCRSVI
GSEHGFNSYPQLVAHVKTKTCKSVQQAQPPNFNPRRVLGDEVYNKINNPV
NSIFKNGIAYFKCFHCAMEVDRTIRFHHCLKCFGH*
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mRNA from alignment at tig00000050_pilon:960113..961120-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1856.t1 ID=Ggra1856.t1|Name=Ggra1856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000050_pilon:960113..961120- (Gracilaria gracilis GNS1m male)
ATGTCCAGGAAGAAAAAGTCAAAGGCAAACAAAGCGCCGGCCAGCGCGCA
GTTGCGCCAACTTCCGGACGAATGCTCCCGCCTCAGTGAAACCGAACACC
ATCAGGGTCATCAGAGTGGTGCGCCGCCGCAATCGGCGCCACAGATTGCG
CCCAAGCTCAAGCAAGAGCCTCAAGTCATCGACTTGGACGCGTCCTTGAT
TTCCAAGCCGGAGCCGACGCTGCCGTCCCTGCACAATCTTCAACACCCCA
CCCGCCTCGACCAACCAAACACTGCGGCTCAGTCTGCCGAGCACCGCTCC
CATGGCGCTGAGGCTGCTCAATCGCCTCACAAACAAAAAGCGTCCGCGAA
GAAAAAGCCCAAAAAGTCTGCTGCTCGCAAACAAAAACGCAAGTCGGGCC
AGGCCACCCCGGCTTCAAACTCGTCCAAGAAGCGGAGACGACCAAATCAA
ATCCACCCTGCGAATGGCCAACCTAATGAACCGCCCGCCAAACTTCAGCG
AATATCTGACCAACCTTGCGGCGATCCTCCTTCTGCCCCGCTGAGAAACC
CTGGTGAGAAGACGATGCTCTGCGAAACCGTCGTGCAGAAAGACGGTGAC
ACGCATGTCATTGTCACCACCAAAGAGCAGTATCCCACCGCCGTCAGATG
CCCGTGCGACATCGGTTGTGGCAGCCTTGTGCGCGTTGGAAACTACGCCA
AGTATTGCCAAGTCGGCACTCCGTTTTGTCCGCATTGTCGCAGCGTTATC
GGAAGCGAACATGGTTTCAATTCCTACCCTCAGCTCGTTGCTCACGTCAA
AACAAAGACATGTAAATCTGTTCAGCAAGCTCAGCCACCAAACTTCAACC
CCAGAAGAGTCCTCGGTGATGAGGTATATAATAAGATCAATAATCCTGTC
AACAGCATATTCAAGAACGGTATAGCATATTTCAAATGCTTTCATTGTGC
AATGGAAGTTGACCGTACTATTAGATTCCATCATTGTTTGAAATGCTTCG
GCCATTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:960113..961120-

>Ggra1856.t1 ID=Ggra1856.t1|Name=Ggra1856.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000050_pilon:960113..961120- (Gracilaria gracilis GNS1m male)
ATGTCCAGGAAGAAAAAGTCAAAGGCAAACAAAGCGCCGGCCAGCGCGCA
GTTGCGCCAACTTCCGGACGAATGCTCCCGCCTCAGTGAAACCGAACACC
ATCAGGGTCATCAGAGTGGTGCGCCGCCGCAATCGGCGCCACAGATTGCG
CCCAAGCTCAAGCAAGAGCCTCAAGTCATCGACTTGGACGCGTCCTTGAT
TTCCAAGCCGGAGCCGACGCTGCCGTCCCTGCACAATCTTCAACACCCCA
CCCGCCTCGACCAACCAAACACTGCGGCTCAGTCTGCCGAGCACCGCTCC
CATGGCGCTGAGGCTGCTCAATCGCCTCACAAACAAAAAGCGTCCGCGAA
GAAAAAGCCCAAAAAGTCTGCTGCTCGCAAACAAAAACGCAAGTCGGGCC
AGGCCACCCCGGCTTCAAACTCGTCCAAGAAGCGGAGACGACCAAATCAA
ATCCACCCTGCGAATGGCCAACCTAATGAACCGCCCGCCAAACTTCAGCG
AATATCTGACCAACCTTGCGGCGATCCTCCTTCTGCCCCGCTGAGAAACC
CTGGTGAGAAGACGATGCTCTGCGAAACCGTCGTGCAGAAAGACGGTGAC
ACGCATGTCATTGTCACCACCAAAGAGCAGTATCCCACCGCCGTCAGATG
CCCGTGCGACATCGGTTGTGGCAGCCTTGTGCGCGTTGGAAACTACGCCA
AGTATTGCCAAGTCGGCACTCCGTTTTGTCCGCATTGTCGCAGCGTTATC
GGAAGCGAACATGGTTTCAATTCCTACCCTCAGCTCGTTGCTCACGTCAA
AACAAAGACATGTAAATCTGTTCAGCAAGCTCAGCCACCAAACTTCAACC
CCAGAAGAGTCCTCGGTGATGAGGTATATAATAAGATCAATAATCCTGTC
AACAGCATATTCAAGAACGGTATAGCATATTTCAAATGCTTTCATTGTGC
AATGGAAGTTGACCGTACTATTAGATTCCATCATTGTTTGAAATGCTTCG
GCCATTAA
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