Ggra1821.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1821.t1
Unique NameGgra1821.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:760496..761152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1821Ggra1821Gracilaria gracilis GNS1m malegenetig00000050_pilon 760496..761152 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1821.t1.stop1Ggra1821.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 760496..760498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1821.t1.CDS1Ggra1821.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 760496..761152 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1821.t1.exon1Ggra1821.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 760496..761152 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1821.t1.start1Ggra1821.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 761150..761152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1821.t1Ggra1821.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 760496..761152 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1821.t1 ID=Ggra1821.t1|Name=Ggra1821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MPASSGSKLSDIEHERFIGDCEHRIKRFNCDRSMINLATFLFFEPNRHGH
VEQAIQLCERAIKQYNSCVAMCVLAQHFYFEGSKEQKKRVIPLLESSIKI
RPLEASLYFLGKALFYGKFDETDKPRAINLLRRGVTMNQNHITLGSLAKM
CLLYPHKDVKKKEALEMFRKVIEIGKDPYHMRQLAKLYETGTPVLKACAK
CSLKWTRMAEEYEQSAGF*
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spliced messenger RNA

>Ggra1821.t1 ID=Ggra1821.t1|Name=Ggra1821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000050_pilon:760496..761152- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCATCATCTGGTTCAAAGCTTTCAGACATAGAACATGAAAGGTT
TATCGGCGATTGTGAACACCGGATTAAGAGGTTCAACTGTGATCGGTCGA
TGATAAATTTGGCGACATTTCTTTTCTTTGAACCAAACAGACATGGTCAT
GTTGAACAAGCGATTCAACTGTGCGAACGTGCAATCAAACAATATAACAG
CTGTGTAGCAATGTGTGTTCTTGCACAACATTTCTACTTTGAAGGGTCGA
AGGAACAAAAAAAGCGAGTGATACCGCTATTGGAGTCGTCCATAAAGATA
AGGCCTCTGGAAGCATCCCTGTATTTTCTCGGCAAGGCTTTGTTTTACGG
CAAATTCGATGAGACCGACAAGCCGCGGGCCATCAATCTGCTCCGACGTG
GGGTGACGATGAATCAGAATCATATCACATTGGGAAGTCTGGCAAAGATG
TGCTTACTGTACCCACATAAAGATGTGAAGAAGAAGGAAGCCCTTGAAAT
GTTTAGAAAGGTCATTGAAATAGGAAAAGACCCGTACCATATGCGGCAGC
TGGCCAAGCTTTATGAAACTGGCACCCCTGTATTGAAGGCATGTGCAAAA
TGCAGCTTGAAATGGACGCGAATGGCGGAAGAATACGAGCAGTCTGCTGG
TTTTTGA
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protein sequence of Ggra1821.t1

>Ggra1821.t1 ID=Ggra1821.t1|Name=Ggra1821.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MPASSGSKLSDIEHERFIGDCEHRIKRFNCDRSMINLATFLFFEPNRHGH
VEQAIQLCERAIKQYNSCVAMCVLAQHFYFEGSKEQKKRVIPLLESSIKI
RPLEASLYFLGKALFYGKFDETDKPRAINLLRRGVTMNQNHITLGSLAKM
CLLYPHKDVKKKEALEMFRKVIEIGKDPYHMRQLAKLYETGTPVLKACAK
CSLKWTRMAEEYEQSAGF*
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mRNA from alignment at tig00000050_pilon:760496..761152-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1821.t1 ID=Ggra1821.t1|Name=Ggra1821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000050_pilon:760496..761152- (Gracilaria gracilis GNS1m male)
ATGCCCGCATCATCTGGTTCAAAGCTTTCAGACATAGAACATGAAAGGTT
TATCGGCGATTGTGAACACCGGATTAAGAGGTTCAACTGTGATCGGTCGA
TGATAAATTTGGCGACATTTCTTTTCTTTGAACCAAACAGACATGGTCAT
GTTGAACAAGCGATTCAACTGTGCGAACGTGCAATCAAACAATATAACAG
CTGTGTAGCAATGTGTGTTCTTGCACAACATTTCTACTTTGAAGGGTCGA
AGGAACAAAAAAAGCGAGTGATACCGCTATTGGAGTCGTCCATAAAGATA
AGGCCTCTGGAAGCATCCCTGTATTTTCTCGGCAAGGCTTTGTTTTACGG
CAAATTCGATGAGACCGACAAGCCGCGGGCCATCAATCTGCTCCGACGTG
GGGTGACGATGAATCAGAATCATATCACATTGGGAAGTCTGGCAAAGATG
TGCTTACTGTACCCACATAAAGATGTGAAGAAGAAGGAAGCCCTTGAAAT
GTTTAGAAAGGTCATTGAAATAGGAAAAGACCCGTACCATATGCGGCAGC
TGGCCAAGCTTTATGAAACTGGCACCCCTGTATTGAAGGCATGTGCAAAA
TGCAGCTTGAAATGGACGCGAATGGCGGAAGAATACGAGCAGTCTGCTGG
TTTTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:760496..761152-

>Ggra1821.t1 ID=Ggra1821.t1|Name=Ggra1821.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000050_pilon:760496..761152- (Gracilaria gracilis GNS1m male)
ATGCCCGCATCATCTGGTTCAAAGCTTTCAGACATAGAACATGAAAGGTT
TATCGGCGATTGTGAACACCGGATTAAGAGGTTCAACTGTGATCGGTCGA
TGATAAATTTGGCGACATTTCTTTTCTTTGAACCAAACAGACATGGTCAT
GTTGAACAAGCGATTCAACTGTGCGAACGTGCAATCAAACAATATAACAG
CTGTGTAGCAATGTGTGTTCTTGCACAACATTTCTACTTTGAAGGGTCGA
AGGAACAAAAAAAGCGAGTGATACCGCTATTGGAGTCGTCCATAAAGATA
AGGCCTCTGGAAGCATCCCTGTATTTTCTCGGCAAGGCTTTGTTTTACGG
CAAATTCGATGAGACCGACAAGCCGCGGGCCATCAATCTGCTCCGACGTG
GGGTGACGATGAATCAGAATCATATCACATTGGGAAGTCTGGCAAAGATG
TGCTTACTGTACCCACATAAAGATGTGAAGAAGAAGGAAGCCCTTGAAAT
GTTTAGAAAGGTCATTGAAATAGGAAAAGACCCGTACCATATGCGGCAGC
TGGCCAAGCTTTATGAAACTGGCACCCCTGTATTGAAGGCATGTGCAAAA
TGCAGCTTGAAATGGACGCGAATGGCGGAAGAATACGAGCAGTCTGCTGG
TTTTTGA
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