Ggra1805.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1805.t1
Unique Name	Ggra1805.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	629

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:682216..684102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1805	Ggra1805	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 682216..684102 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1805.t1.start1	Ggra1805.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 682216..682218 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1805.t1.CDS1	Ggra1805.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 682216..684102 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1805.t1.exon1	Ggra1805.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 682216..684102 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1805.t1.stop1	Ggra1805.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 684100..684102 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1805.t1	Ggra1805.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 682216..684102 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:682216..684102+
coding sequence from alignment at tig00000050_pilon:682216..684102+

mRNA sequence

>Ggra1805.t1 ID=Ggra1805.t1|Name=Ggra1805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=629bp
MTDSDPVHTLADSPELVLTVYAVVLTPLALYVYHDILDKRWRPVWRLSRY
LVCYFLLYITSGSALIVYIVIQARYGQDYKEVGASALAFILGTYGAWRLV
RLTRIIIAHHSLVKILQRIDRALTSGTGLQPVGLEYHLFRHPTTSKPSRL
EHTQWRFETRHDFISSALFDDDYPGDNAARIRWLAFFGKRVVVLEDDAEE
CASRVALWMRLVLRRPRSEPWRLLTSTSPLVQGQTYRADLGEALRALISS
GSAKQAPPHANPNPAQVLLNRIEKRGLTEVAVGFFWIASEMSSEEMSQVL
AEMPPRWMRGVTQNGKQLMFELVMALILCEMPPPENQDMQWLLSLPVLDW
KRGVENVKLRTVLSELCADAVCSVMGGLWSQSESPCQDEVRTIVRDGVLA
LQEATSSEQGFEGTNVGLTLLDLILTSYRSGYMAEQILGKALELELKRQN
SKADEDVRIYKAEIVTGLYSILQKLGQDDSEEFHDSFSSLKSSWGVDENI
KDVFFAIHERARMERRASFQFDEVTQSRCWYVSDRNCQCEDPASAFGTAY
TTAMELAPLVVQMLRHCADQGGGICLLKGHANPDRSSEMWIEWKKTQAYD
ISGSAEGLSADMSGSGSNGKGSVAVSLW*

spliced messenger RNA

>Ggra1805.t1 ID=Ggra1805.t1|Name=Ggra1805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000050_pilon:682216..684102+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGACTCGGACCCAGTGCACACTCTAGCAGACAGCCCCGAACTCGT
GCTCACCGTCTACGCCGTCGTTCTGACGCCGCTAGCACTCTACGTCTACC
ATGACATCCTCGATAAAAGATGGCGCCCAGTGTGGCGTCTTTCCCGCTAT
CTCGTGTGCTACTTCCTTCTCTACATCACCTCTGGCAGTGCTCTCATCGT
GTACATCGTCATCCAGGCCCGCTACGGCCAAGACTATAAAGAAGTTGGAG
CCTCCGCGCTAGCCTTTATCCTCGGCACATACGGTGCCTGGCGTCTCGTC
CGTCTAACTCGCATAATAATTGCCCACCATTCCCTCGTCAAAATCCTCCA
GCGCATCGACCGCGCGCTCACGTCTGGAACAGGTCTACAGCCTGTCGGCC
TTGAGTACCATCTGTTCCGACACCCAACAACGTCAAAACCATCGCGACTA
GAACATACACAATGGCGCTTCGAAACGCGTCATGACTTCATTTCATCCGC
CTTGTTCGACGACGATTATCCCGGAGACAACGCCGCGCGAATTCGCTGGC
TAGCCTTCTTCGGGAAGCGCGTCGTCGTATTAGAGGATGATGCCGAAGAA
TGCGCTTCACGAGTCGCGCTGTGGATGCGTCTCGTGCTCAGACGTCCTCG
CAGTGAACCGTGGCGACTGCTCACCTCTACCAGTCCGCTTGTGCAAGGCC
AAACTTACCGCGCCGACTTAGGCGAGGCCCTGCGAGCGCTGATCTCAAGC
GGTAGTGCGAAGCAGGCTCCGCCCCACGCAAATCCTAACCCCGCTCAGGT
ACTGCTCAACAGGATTGAGAAACGTGGCTTGACAGAAGTCGCAGTCGGCT
TCTTCTGGATTGCGTCGGAGATGAGTTCTGAGGAGATGAGCCAAGTGCTT
GCAGAAATGCCGCCGAGATGGATGCGCGGAGTGACTCAGAACGGCAAACA
ACTCATGTTCGAGTTAGTCATGGCGTTGATTCTGTGCGAAATGCCGCCGC
CGGAAAACCAGGATATGCAGTGGCTGCTCTCATTGCCCGTGCTGGATTGG
AAGAGAGGCGTGGAGAATGTGAAACTACGCACTGTACTCTCCGAGCTTTG
TGCCGATGCAGTATGTTCGGTAATGGGAGGGCTTTGGTCGCAGAGCGAGT
CACCTTGCCAGGATGAAGTGCGCACAATCGTACGCGACGGCGTGCTGGCG
CTGCAAGAGGCAACATCTAGCGAACAAGGATTTGAAGGCACCAATGTGGG
GCTGACTCTGTTGGACTTGATATTGACATCCTATCGCTCCGGGTACATGG
CAGAACAAATCCTGGGCAAGGCACTTGAATTGGAGCTCAAACGACAGAAC
AGCAAGGCGGACGAAGATGTGCGCATTTACAAGGCGGAGATTGTAACAGG
ATTGTACTCCATTCTGCAAAAGCTGGGACAGGATGACAGCGAGGAATTCC
ATGATAGCTTCAGCTCATTGAAGAGTAGTTGGGGCGTAGATGAAAATATT
AAGGACGTGTTCTTCGCGATTCATGAACGAGCAAGAATGGAGAGGCGCGC
GTCATTTCAGTTTGACGAGGTTACACAAAGTCGATGTTGGTACGTTAGCG
ACCGAAATTGTCAGTGTGAGGATCCTGCATCAGCGTTCGGAACGGCGTAC
ACAACCGCAATGGAACTGGCACCGCTTGTGGTGCAAATGTTGCGGCATTG
CGCAGACCAAGGCGGTGGTATATGCCTTTTGAAGGGGCATGCAAACCCTG
ACCGGTCGAGCGAAATGTGGATCGAGTGGAAGAAGACGCAAGCATACGAT
ATCAGCGGGAGCGCGGAGGGATTGAGCGCGGACATGTCGGGCAGTGGATC
AAATGGGAAAGGAAGTGTAGCGGTATCATTATGGTAA

protein sequence of Ggra1805.t1

>Ggra1805.t1 ID=Ggra1805.t1|Name=Ggra1805.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=629bp
MTDSDPVHTLADSPELVLTVYAVVLTPLALYVYHDILDKRWRPVWRLSRY
LVCYFLLYITSGSALIVYIVIQARYGQDYKEVGASALAFILGTYGAWRLV
RLTRIIIAHHSLVKILQRIDRALTSGTGLQPVGLEYHLFRHPTTSKPSRL
EHTQWRFETRHDFISSALFDDDYPGDNAARIRWLAFFGKRVVVLEDDAEE
CASRVALWMRLVLRRPRSEPWRLLTSTSPLVQGQTYRADLGEALRALISS
GSAKQAPPHANPNPAQVLLNRIEKRGLTEVAVGFFWIASEMSSEEMSQVL
AEMPPRWMRGVTQNGKQLMFELVMALILCEMPPPENQDMQWLLSLPVLDW
KRGVENVKLRTVLSELCADAVCSVMGGLWSQSESPCQDEVRTIVRDGVLA
LQEATSSEQGFEGTNVGLTLLDLILTSYRSGYMAEQILGKALELELKRQN
SKADEDVRIYKAEIVTGLYSILQKLGQDDSEEFHDSFSSLKSSWGVDENI
KDVFFAIHERARMERRASFQFDEVTQSRCWYVSDRNCQCEDPASAFGTAY
TTAMELAPLVVQMLRHCADQGGGICLLKGHANPDRSSEMWIEWKKTQAYD
ISGSAEGLSADMSGSGSNGKGSVAVSLW*

mRNA from alignment at tig00000050_pilon:682216..684102+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1805.t1 ID=Ggra1805.t1|Name=Ggra1805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000050_pilon:682216..684102+ (Gracilaria gracilis GNS1m male)
ATGACAGACTCGGACCCAGTGCACACTCTAGCAGACAGCCCCGAACTCGT
GCTCACCGTCTACGCCGTCGTTCTGACGCCGCTAGCACTCTACGTCTACC
ATGACATCCTCGATAAAAGATGGCGCCCAGTGTGGCGTCTTTCCCGCTAT
CTCGTGTGCTACTTCCTTCTCTACATCACCTCTGGCAGTGCTCTCATCGT
GTACATCGTCATCCAGGCCCGCTACGGCCAAGACTATAAAGAAGTTGGAG
CCTCCGCGCTAGCCTTTATCCTCGGCACATACGGTGCCTGGCGTCTCGTC
CGTCTAACTCGCATAATAATTGCCCACCATTCCCTCGTCAAAATCCTCCA
GCGCATCGACCGCGCGCTCACGTCTGGAACAGGTCTACAGCCTGTCGGCC
TTGAGTACCATCTGTTCCGACACCCAACAACGTCAAAACCATCGCGACTA
GAACATACACAATGGCGCTTCGAAACGCGTCATGACTTCATTTCATCCGC
CTTGTTCGACGACGATTATCCCGGAGACAACGCCGCGCGAATTCGCTGGC
TAGCCTTCTTCGGGAAGCGCGTCGTCGTATTAGAGGATGATGCCGAAGAA
TGCGCTTCACGAGTCGCGCTGTGGATGCGTCTCGTGCTCAGACGTCCTCG
CAGTGAACCGTGGCGACTGCTCACCTCTACCAGTCCGCTTGTGCAAGGCC
AAACTTACCGCGCCGACTTAGGCGAGGCCCTGCGAGCGCTGATCTCAAGC
GGTAGTGCGAAGCAGGCTCCGCCCCACGCAAATCCTAACCCCGCTCAGGT
ACTGCTCAACAGGATTGAGAAACGTGGCTTGACAGAAGTCGCAGTCGGCT
TCTTCTGGATTGCGTCGGAGATGAGTTCTGAGGAGATGAGCCAAGTGCTT
GCAGAAATGCCGCCGAGATGGATGCGCGGAGTGACTCAGAACGGCAAACA
ACTCATGTTCGAGTTAGTCATGGCGTTGATTCTGTGCGAAATGCCGCCGC
CGGAAAACCAGGATATGCAGTGGCTGCTCTCATTGCCCGTGCTGGATTGG
AAGAGAGGCGTGGAGAATGTGAAACTACGCACTGTACTCTCCGAGCTTTG
TGCCGATGCAGTATGTTCGGTAATGGGAGGGCTTTGGTCGCAGAGCGAGT
CACCTTGCCAGGATGAAGTGCGCACAATCGTACGCGACGGCGTGCTGGCG
CTGCAAGAGGCAACATCTAGCGAACAAGGATTTGAAGGCACCAATGTGGG
GCTGACTCTGTTGGACTTGATATTGACATCCTATCGCTCCGGGTACATGG
CAGAACAAATCCTGGGCAAGGCACTTGAATTGGAGCTCAAACGACAGAAC
AGCAAGGCGGACGAAGATGTGCGCATTTACAAGGCGGAGATTGTAACAGG
ATTGTACTCCATTCTGCAAAAGCTGGGACAGGATGACAGCGAGGAATTCC
ATGATAGCTTCAGCTCATTGAAGAGTAGTTGGGGCGTAGATGAAAATATT
AAGGACGTGTTCTTCGCGATTCATGAACGAGCAAGAATGGAGAGGCGCGC
GTCATTTCAGTTTGACGAGGTTACACAAAGTCGATGTTGGTACGTTAGCG
ACCGAAATTGTCAGTGTGAGGATCCTGCATCAGCGTTCGGAACGGCGTAC
ACAACCGCAATGGAACTGGCACCGCTTGTGGTGCAAATGTTGCGGCATTG
CGCAGACCAAGGCGGTGGTATATGCCTTTTGAAGGGGCATGCAAACCCTG
ACCGGTCGAGCGAAATGTGGATCGAGTGGAAGAAGACGCAAGCATACGAT
ATCAGCGGGAGCGCGGAGGGATTGAGCGCGGACATGTCGGGCAGTGGATC
AAATGGGAAAGGAAGTGTAGCGGTATCATTATGGTAA

Coding sequence (CDS) from alignment at tig00000050_pilon:682216..684102+

>Ggra1805.t1 ID=Ggra1805.t1|Name=Ggra1805.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00000050_pilon:682216..684102+ (Gracilaria gracilis GNS1m male)
ATGACAGACTCGGACCCAGTGCACACTCTAGCAGACAGCCCCGAACTCGT
GCTCACCGTCTACGCCGTCGTTCTGACGCCGCTAGCACTCTACGTCTACC
ATGACATCCTCGATAAAAGATGGCGCCCAGTGTGGCGTCTTTCCCGCTAT
CTCGTGTGCTACTTCCTTCTCTACATCACCTCTGGCAGTGCTCTCATCGT
GTACATCGTCATCCAGGCCCGCTACGGCCAAGACTATAAAGAAGTTGGAG
CCTCCGCGCTAGCCTTTATCCTCGGCACATACGGTGCCTGGCGTCTCGTC
CGTCTAACTCGCATAATAATTGCCCACCATTCCCTCGTCAAAATCCTCCA
GCGCATCGACCGCGCGCTCACGTCTGGAACAGGTCTACAGCCTGTCGGCC
TTGAGTACCATCTGTTCCGACACCCAACAACGTCAAAACCATCGCGACTA
GAACATACACAATGGCGCTTCGAAACGCGTCATGACTTCATTTCATCCGC
CTTGTTCGACGACGATTATCCCGGAGACAACGCCGCGCGAATTCGCTGGC
TAGCCTTCTTCGGGAAGCGCGTCGTCGTATTAGAGGATGATGCCGAAGAA
TGCGCTTCACGAGTCGCGCTGTGGATGCGTCTCGTGCTCAGACGTCCTCG
CAGTGAACCGTGGCGACTGCTCACCTCTACCAGTCCGCTTGTGCAAGGCC
AAACTTACCGCGCCGACTTAGGCGAGGCCCTGCGAGCGCTGATCTCAAGC
GGTAGTGCGAAGCAGGCTCCGCCCCACGCAAATCCTAACCCCGCTCAGGT
ACTGCTCAACAGGATTGAGAAACGTGGCTTGACAGAAGTCGCAGTCGGCT
TCTTCTGGATTGCGTCGGAGATGAGTTCTGAGGAGATGAGCCAAGTGCTT
GCAGAAATGCCGCCGAGATGGATGCGCGGAGTGACTCAGAACGGCAAACA
ACTCATGTTCGAGTTAGTCATGGCGTTGATTCTGTGCGAAATGCCGCCGC
CGGAAAACCAGGATATGCAGTGGCTGCTCTCATTGCCCGTGCTGGATTGG
AAGAGAGGCGTGGAGAATGTGAAACTACGCACTGTACTCTCCGAGCTTTG
TGCCGATGCAGTATGTTCGGTAATGGGAGGGCTTTGGTCGCAGAGCGAGT
CACCTTGCCAGGATGAAGTGCGCACAATCGTACGCGACGGCGTGCTGGCG
CTGCAAGAGGCAACATCTAGCGAACAAGGATTTGAAGGCACCAATGTGGG
GCTGACTCTGTTGGACTTGATATTGACATCCTATCGCTCCGGGTACATGG
CAGAACAAATCCTGGGCAAGGCACTTGAATTGGAGCTCAAACGACAGAAC
AGCAAGGCGGACGAAGATGTGCGCATTTACAAGGCGGAGATTGTAACAGG
ATTGTACTCCATTCTGCAAAAGCTGGGACAGGATGACAGCGAGGAATTCC
ATGATAGCTTCAGCTCATTGAAGAGTAGTTGGGGCGTAGATGAAAATATT
AAGGACGTGTTCTTCGCGATTCATGAACGAGCAAGAATGGAGAGGCGCGC
GTCATTTCAGTTTGACGAGGTTACACAAAGTCGATGTTGGTACGTTAGCG
ACCGAAATTGTCAGTGTGAGGATCCTGCATCAGCGTTCGGAACGGCGTAC
ACAACCGCAATGGAACTGGCACCGCTTGTGGTGCAAATGTTGCGGCATTG
CGCAGACCAAGGCGGTGGTATATGCCTTTTGAAGGGGCATGCAAACCCTG
ACCGGTCGAGCGAAATGTGGATCGAGTGGAAGAAGACGCAAGCATACGAT
ATCAGCGGGAGCGCGGAGGGATTGAGCGCGGACATGTCGGGCAGTGGATC
AAATGGGAAAGGAAGTGTAGCGGTATCATTATGGTAA