Ggra1796.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1796.t1
Unique NameGgra1796.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:652777..653369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1796Ggra1796Gracilaria gracilis GNS1m malegenetig00000050_pilon 652777..653369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1796.t1Ggra1796.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 652777..653369 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1796.t1.stop1Ggra1796.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 652777..652779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1796.t1.CDS1Ggra1796.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 652777..652992 -
Ggra1796.t1.CDS2Ggra1796.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 653202..653228 -
Ggra1796.t1.CDS3Ggra1796.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 653322..653369 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1796.t1.exon1Ggra1796.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 652777..652992 -
Ggra1796.t1.exon2Ggra1796.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 653202..653228 -
Ggra1796.t1.exon3Ggra1796.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 653322..653369 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1796.t1.intron1Ggra1796.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 652993..653201 -
Ggra1796.t1.intron2Ggra1796.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 653229..653321 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1796.t1.start1Ggra1796.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 653367..653369 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1796.t1 ID=Ggra1796.t1|Name=Ggra1796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=97bp
MQFAPALMPRQGFIYRRSGTLVNNPEKELIRAATAAAQADDMQALDDASL
DCLKLFQPFIHSLPQDRENEDIVRRLNFNYALLMVASRWQTPQADS*
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spliced messenger RNA

>Ggra1796.t1 ID=Ggra1796.t1|Name=Ggra1796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp|location=Sequence derived from alignment at tig00000050_pilon:652777..653369- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTTGCCCCAGCACTGATGCCACGCCAAGGCTTCATTTACCGACG
AAGCGGAACACTTGTCAATAATCCTGAAAAGGAACTAATTCGGGCAGCCA
CGGCTGCGGCTCAAGCAGATGATATGCAGGCTCTAGACGACGCCTCACTA
GACTGTTTGAAGCTGTTTCAGCCTTTCATCCACTCGCTACCCCAGGATCG
GGAGAACGAGGACATTGTTAGGAGATTGAATTTCAATTACGCACTGCTGA
TGGTCGCTTCGAGATGGCAAACACCGCAAGCTGATAGCTGA
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protein sequence of Ggra1796.t1

>Ggra1796.t1 ID=Ggra1796.t1|Name=Ggra1796.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=97bp
MQFAPALMPRQGFIYRRSGTLVNNPEKELIRAATAAAQADDMQALDDASL
DCLKLFQPFIHSLPQDRENEDIVRRLNFNYALLMVASRWQTPQADS*
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mRNA from alignment at tig00000050_pilon:652777..653369-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1796.t1 ID=Ggra1796.t1|Name=Ggra1796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp|location=Sequence derived from alignment at tig00000050_pilon:652777..653369- (Gracilaria gracilis GNS1m male)
ATGCAATTTGCCCCAGCACTGATGCCACGCCAAGGCTTCATTTACCGAGT
CCGCTGAAGTTGTACCATTGCGAGCTGATTGCGAGTAGATATATCATACT
CAATCTACGCTGGCGCTTGTTCTTCTTCTTCTGTTCTTTAGCGAAGCGGA
ACACTTGTCAATAATCCTGTAAGTCACATCACGGTTTCGCCAACATCTTC
AAAGCTTCTCATTATTCCAACCGTTCTGGGATAAAAATGAGCACTCCAAA
TTGGAGCTTGTTTAAGTCACGCCATTTAGGCGTTACAGAAAACATCCACT
GGGAGTCCATTTTCGACTAGGACAAAGTCCGGTATTTCGCAATTCTGACA
ATGAATGAGGATGATGAGTTTTGCCAGGAAAAGGAACTAATTCGGGCAGC
CACGGCTGCGGCTCAAGCAGATGATATGCAGGCTCTAGACGACGCCTCAC
TAGACTGTTTGAAGCTGTTTCAGCCTTTCATCCACTCGCTACCCCAGGAT
CGGGAGAACGAGGACATTGTTAGGAGATTGAATTTCAATTACGCACTGCT
GATGGTCGCTTCGAGATGGCAAACACCGCAAGCTGATAGCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:652777..653369-

>Ggra1796.t1 ID=Ggra1796.t1|Name=Ggra1796.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=291bp|location=Sequence derived from alignment at tig00000050_pilon:652777..653369- (Gracilaria gracilis GNS1m male)
ATGCAATTTGCCCCAGCACTGATGCCACGCCAAGGCTTCATTTACCGACG
AAGCGGAACACTTGTCAATAATCCTGAAAAGGAACTAATTCGGGCAGCCA
CGGCTGCGGCTCAAGCAGATGATATGCAGGCTCTAGACGACGCCTCACTA
GACTGTTTGAAGCTGTTTCAGCCTTTCATCCACTCGCTACCCCAGGATCG
GGAGAACGAGGACATTGTTAGGAGATTGAATTTCAATTACGCACTGCTGA
TGGTCGCTTCGAGATGGCAAACACCGCAAGCTGATAGCTGA
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