Ggra1793.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1793.t1
Unique NameGgra1793.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:644229..645239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1793Ggra1793Gracilaria gracilis GNS1m malegenetig00000050_pilon 644229..645239 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1793.t1.stop1Ggra1793.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 644229..644231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1793.t1.CDS1Ggra1793.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 644229..645239 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1793.t1.exon1Ggra1793.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 644229..645239 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1793.t1.start1Ggra1793.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 645237..645239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1793.t1Ggra1793.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 644229..645239 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1793.t1 ID=Ggra1793.t1|Name=Ggra1793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MDTADNTTVEQYLAAWADLVSLLLLCVAIVIQGGIDPRRTVWGRSPTRNV
LNILFMGLNIIFSAVRLIAEGILVETGPREFLLLSVIYTARWLWLYAAIT
KSDSRAARAFEVALQLRKLNTIRLGPSTSLRRKGKTELVIRRGARVVIGE
PYWRGVEEYVKRRERKGPYKVRLVEKELHSSQLDEIGTVDFKRKLETDSK
DALYKKFYDLVLTVESGNKDLKLDYSEFLDEYEAIRETSRLPQRVGAIDT
FPVANVARRIAADACFYIWAPDGELRTKRQVELLNKSVENAATAYMGVAN
LGPDGMRRKDIPHVYSENDWKIFDCFGGRTRTESPV*
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spliced messenger RNA

>Ggra1793.t1 ID=Ggra1793.t1|Name=Ggra1793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000050_pilon:644229..645239- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACCGCAGACAATACTACAGTCGAACAATATTTGGCAGCGTGGGC
CGATCTCGTTTCTCTTCTCCTCCTATGTGTTGCGATTGTAATCCAGGGCG
GAATCGACCCCCGCCGAACCGTTTGGGGCCGCAGCCCCACTCGCAATGTA
CTGAATATTCTCTTCATGGGTTTGAATATCATCTTCTCTGCCGTTCGACT
CATCGCTGAAGGGATTCTGGTTGAGACAGGCCCTCGTGAGTTTTTGCTTC
TCTCTGTTATTTATACAGCGCGTTGGTTGTGGTTGTACGCAGCAATTACC
AAGTCGGATTCTCGCGCTGCACGAGCTTTCGAAGTTGCTCTCCAACTACG
CAAACTGAACACTATACGTCTCGGACCTTCGACTAGTTTAAGGAGAAAGG
GTAAAACAGAATTGGTCATACGCCGAGGGGCTAGGGTAGTTATTGGGGAA
CCGTACTGGAGGGGTGTGGAGGAGTACGTCAAGCGTCGTGAACGAAAGGG
ACCCTATAAGGTTCGCTTGGTTGAAAAAGAACTGCATTCTAGTCAGTTGG
ATGAAATCGGTACCGTGGACTTCAAGAGGAAGTTGGAGACAGACAGCAAG
GATGCGCTTTACAAGAAGTTCTATGACCTAGTATTGACTGTTGAATCAGG
GAACAAAGATTTAAAGCTGGACTATTCAGAGTTCCTGGATGAATATGAGG
CAATTCGGGAAACCTCACGCTTACCCCAACGAGTTGGCGCTATTGACACT
TTCCCCGTAGCCAACGTTGCGAGGCGTATCGCAGCCGATGCATGTTTTTA
CATCTGGGCTCCAGACGGTGAGCTCCGCACTAAAAGGCAAGTGGAGCTCT
TGAACAAAAGTGTTGAGAACGCGGCCACTGCGTACATGGGTGTTGCCAAT
TTGGGCCCTGATGGCATGAGACGCAAGGATATTCCCCATGTCTACTCGGA
AAACGATTGGAAAATTTTTGACTGCTTTGGTGGCAGAACGAGAACAGAAT
CCCCCGTGTAA
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protein sequence of Ggra1793.t1

>Ggra1793.t1 ID=Ggra1793.t1|Name=Ggra1793.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MDTADNTTVEQYLAAWADLVSLLLLCVAIVIQGGIDPRRTVWGRSPTRNV
LNILFMGLNIIFSAVRLIAEGILVETGPREFLLLSVIYTARWLWLYAAIT
KSDSRAARAFEVALQLRKLNTIRLGPSTSLRRKGKTELVIRRGARVVIGE
PYWRGVEEYVKRRERKGPYKVRLVEKELHSSQLDEIGTVDFKRKLETDSK
DALYKKFYDLVLTVESGNKDLKLDYSEFLDEYEAIRETSRLPQRVGAIDT
FPVANVARRIAADACFYIWAPDGELRTKRQVELLNKSVENAATAYMGVAN
LGPDGMRRKDIPHVYSENDWKIFDCFGGRTRTESPV*
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mRNA from alignment at tig00000050_pilon:644229..645239-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1793.t1 ID=Ggra1793.t1|Name=Ggra1793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000050_pilon:644229..645239- (Gracilaria gracilis GNS1m male)
ATGGACACCGCAGACAATACTACAGTCGAACAATATTTGGCAGCGTGGGC
CGATCTCGTTTCTCTTCTCCTCCTATGTGTTGCGATTGTAATCCAGGGCG
GAATCGACCCCCGCCGAACCGTTTGGGGCCGCAGCCCCACTCGCAATGTA
CTGAATATTCTCTTCATGGGTTTGAATATCATCTTCTCTGCCGTTCGACT
CATCGCTGAAGGGATTCTGGTTGAGACAGGCCCTCGTGAGTTTTTGCTTC
TCTCTGTTATTTATACAGCGCGTTGGTTGTGGTTGTACGCAGCAATTACC
AAGTCGGATTCTCGCGCTGCACGAGCTTTCGAAGTTGCTCTCCAACTACG
CAAACTGAACACTATACGTCTCGGACCTTCGACTAGTTTAAGGAGAAAGG
GTAAAACAGAATTGGTCATACGCCGAGGGGCTAGGGTAGTTATTGGGGAA
CCGTACTGGAGGGGTGTGGAGGAGTACGTCAAGCGTCGTGAACGAAAGGG
ACCCTATAAGGTTCGCTTGGTTGAAAAAGAACTGCATTCTAGTCAGTTGG
ATGAAATCGGTACCGTGGACTTCAAGAGGAAGTTGGAGACAGACAGCAAG
GATGCGCTTTACAAGAAGTTCTATGACCTAGTATTGACTGTTGAATCAGG
GAACAAAGATTTAAAGCTGGACTATTCAGAGTTCCTGGATGAATATGAGG
CAATTCGGGAAACCTCACGCTTACCCCAACGAGTTGGCGCTATTGACACT
TTCCCCGTAGCCAACGTTGCGAGGCGTATCGCAGCCGATGCATGTTTTTA
CATCTGGGCTCCAGACGGTGAGCTCCGCACTAAAAGGCAAGTGGAGCTCT
TGAACAAAAGTGTTGAGAACGCGGCCACTGCGTACATGGGTGTTGCCAAT
TTGGGCCCTGATGGCATGAGACGCAAGGATATTCCCCATGTCTACTCGGA
AAACGATTGGAAAATTTTTGACTGCTTTGGTGGCAGAACGAGAACAGAAT
CCCCCGTGTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:644229..645239-

>Ggra1793.t1 ID=Ggra1793.t1|Name=Ggra1793.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000050_pilon:644229..645239- (Gracilaria gracilis GNS1m male)
ATGGACACCGCAGACAATACTACAGTCGAACAATATTTGGCAGCGTGGGC
CGATCTCGTTTCTCTTCTCCTCCTATGTGTTGCGATTGTAATCCAGGGCG
GAATCGACCCCCGCCGAACCGTTTGGGGCCGCAGCCCCACTCGCAATGTA
CTGAATATTCTCTTCATGGGTTTGAATATCATCTTCTCTGCCGTTCGACT
CATCGCTGAAGGGATTCTGGTTGAGACAGGCCCTCGTGAGTTTTTGCTTC
TCTCTGTTATTTATACAGCGCGTTGGTTGTGGTTGTACGCAGCAATTACC
AAGTCGGATTCTCGCGCTGCACGAGCTTTCGAAGTTGCTCTCCAACTACG
CAAACTGAACACTATACGTCTCGGACCTTCGACTAGTTTAAGGAGAAAGG
GTAAAACAGAATTGGTCATACGCCGAGGGGCTAGGGTAGTTATTGGGGAA
CCGTACTGGAGGGGTGTGGAGGAGTACGTCAAGCGTCGTGAACGAAAGGG
ACCCTATAAGGTTCGCTTGGTTGAAAAAGAACTGCATTCTAGTCAGTTGG
ATGAAATCGGTACCGTGGACTTCAAGAGGAAGTTGGAGACAGACAGCAAG
GATGCGCTTTACAAGAAGTTCTATGACCTAGTATTGACTGTTGAATCAGG
GAACAAAGATTTAAAGCTGGACTATTCAGAGTTCCTGGATGAATATGAGG
CAATTCGGGAAACCTCACGCTTACCCCAACGAGTTGGCGCTATTGACACT
TTCCCCGTAGCCAACGTTGCGAGGCGTATCGCAGCCGATGCATGTTTTTA
CATCTGGGCTCCAGACGGTGAGCTCCGCACTAAAAGGCAAGTGGAGCTCT
TGAACAAAAGTGTTGAGAACGCGGCCACTGCGTACATGGGTGTTGCCAAT
TTGGGCCCTGATGGCATGAGACGCAAGGATATTCCCCATGTCTACTCGGA
AAACGATTGGAAAATTTTTGACTGCTTTGGTGGCAGAACGAGAACAGAAT
CCCCCGTGTAA
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