Ggra1792.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1792.t1
Unique NameGgra1792.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:643033..644037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1792Ggra1792Gracilaria gracilis GNS1m malegenetig00000050_pilon 643033..644037 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1792.t1.start1Ggra1792.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 643033..643035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1792.t1.CDS1Ggra1792.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 643033..644037 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1792.t1.exon1Ggra1792.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 643033..644037 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1792.t1.stop1Ggra1792.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 644035..644037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1792.t1Ggra1792.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 643033..644037 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1792.t1 ID=Ggra1792.t1|Name=Ggra1792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=335bp
MKDASWKQTGKPRCPRRTFVNPEEDVPFFCLSYKHESDIKPLNADELMGA
LKKAAVLAESLYGKRCFRIWVDQLVFGSTQGWVGIGLVPYLLFPTVFASE
AEKSTSSSWICMEKLCSQLIVGGDLSGCSGTELWKNVACSNTLLESISAV
AEVVSKQEEDITTMRSDDLEYLHDWARGILYGKYDSSPYEGAREELGQPW
NLAEHKKMHYIALFSLRANDNSVLRHYYRQRTHRFENGKDGWNIKHILFD
ANPKVENFALLEKVTIAVKAEGAENTLVLVTHFSNQSIYTRLNVLYQNDH
KIWVSSMHTISEEQAEVYINLKGKGETVELERLY*
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spliced messenger RNA

>Ggra1792.t1 ID=Ggra1792.t1|Name=Ggra1792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000050_pilon:643033..644037+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATGCGTCATGGAAGCAGACGGGAAAGCCTCGGTGTCCCCGCCG
AACTTTTGTGAATCCTGAAGAGGATGTTCCCTTTTTTTGCTTGTCATACA
AGCACGAGTCCGATATTAAGCCGCTAAACGCAGATGAGTTAATGGGTGCA
TTGAAGAAAGCGGCAGTATTGGCCGAAAGTTTGTATGGGAAGAGATGTTT
CAGAATATGGGTCGACCAGCTCGTGTTCGGGAGTACCCAAGGATGGGTTG
GCATAGGACTAGTGCCATACTTACTGTTCCCAACTGTTTTTGCGTCTGAA
GCCGAGAAGTCAACATCCAGCTCATGGATCTGTATGGAAAAGTTATGTTC
ACAGCTCATCGTGGGAGGTGACCTTAGCGGGTGTAGTGGTACCGAACTTT
GGAAAAATGTCGCGTGTTCCAATACTCTGTTAGAAAGCATTTCAGCCGTT
GCTGAGGTGGTTTCCAAACAAGAAGAAGATATAACGACCATGAGGTCCGA
TGATCTTGAATACCTTCATGATTGGGCCAGAGGTATTCTTTACGGGAAGT
ATGACAGTAGTCCCTACGAAGGAGCAAGGGAAGAACTAGGTCAACCTTGG
AATCTGGCTGAACACAAAAAGATGCACTATATAGCACTTTTCTCTCTGAG
AGCGAACGACAATTCTGTGTTGCGACACTATTACAGACAAAGAACCCATC
GATTCGAAAACGGAAAAGACGGTTGGAATATCAAGCATATTCTCTTCGAT
GCGAACCCGAAGGTGGAAAACTTCGCTCTACTAGAAAAGGTTACCATTGC
GGTGAAAGCGGAAGGGGCAGAAAATACCCTTGTGCTCGTGACACACTTCT
CCAATCAGAGCATATATACTCGTCTCAATGTGCTTTATCAGAACGATCAC
AAAATATGGGTTTCGTCAATGCACACAATCTCTGAGGAACAAGCAGAGGT
ATACATCAATTTGAAAGGTAAAGGCGAAACCGTTGAACTAGAACGCCTGT
ATTAG
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protein sequence of Ggra1792.t1

>Ggra1792.t1 ID=Ggra1792.t1|Name=Ggra1792.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=335bp
MKDASWKQTGKPRCPRRTFVNPEEDVPFFCLSYKHESDIKPLNADELMGA
LKKAAVLAESLYGKRCFRIWVDQLVFGSTQGWVGIGLVPYLLFPTVFASE
AEKSTSSSWICMEKLCSQLIVGGDLSGCSGTELWKNVACSNTLLESISAV
AEVVSKQEEDITTMRSDDLEYLHDWARGILYGKYDSSPYEGAREELGQPW
NLAEHKKMHYIALFSLRANDNSVLRHYYRQRTHRFENGKDGWNIKHILFD
ANPKVENFALLEKVTIAVKAEGAENTLVLVTHFSNQSIYTRLNVLYQNDH
KIWVSSMHTISEEQAEVYINLKGKGETVELERLY*
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mRNA from alignment at tig00000050_pilon:643033..644037+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1792.t1 ID=Ggra1792.t1|Name=Ggra1792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000050_pilon:643033..644037+ (Gracilaria gracilis GNS1m male)
ATGAAAGATGCGTCATGGAAGCAGACGGGAAAGCCTCGGTGTCCCCGCCG
AACTTTTGTGAATCCTGAAGAGGATGTTCCCTTTTTTTGCTTGTCATACA
AGCACGAGTCCGATATTAAGCCGCTAAACGCAGATGAGTTAATGGGTGCA
TTGAAGAAAGCGGCAGTATTGGCCGAAAGTTTGTATGGGAAGAGATGTTT
CAGAATATGGGTCGACCAGCTCGTGTTCGGGAGTACCCAAGGATGGGTTG
GCATAGGACTAGTGCCATACTTACTGTTCCCAACTGTTTTTGCGTCTGAA
GCCGAGAAGTCAACATCCAGCTCATGGATCTGTATGGAAAAGTTATGTTC
ACAGCTCATCGTGGGAGGTGACCTTAGCGGGTGTAGTGGTACCGAACTTT
GGAAAAATGTCGCGTGTTCCAATACTCTGTTAGAAAGCATTTCAGCCGTT
GCTGAGGTGGTTTCCAAACAAGAAGAAGATATAACGACCATGAGGTCCGA
TGATCTTGAATACCTTCATGATTGGGCCAGAGGTATTCTTTACGGGAAGT
ATGACAGTAGTCCCTACGAAGGAGCAAGGGAAGAACTAGGTCAACCTTGG
AATCTGGCTGAACACAAAAAGATGCACTATATAGCACTTTTCTCTCTGAG
AGCGAACGACAATTCTGTGTTGCGACACTATTACAGACAAAGAACCCATC
GATTCGAAAACGGAAAAGACGGTTGGAATATCAAGCATATTCTCTTCGAT
GCGAACCCGAAGGTGGAAAACTTCGCTCTACTAGAAAAGGTTACCATTGC
GGTGAAAGCGGAAGGGGCAGAAAATACCCTTGTGCTCGTGACACACTTCT
CCAATCAGAGCATATATACTCGTCTCAATGTGCTTTATCAGAACGATCAC
AAAATATGGGTTTCGTCAATGCACACAATCTCTGAGGAACAAGCAGAGGT
ATACATCAATTTGAAAGGTAAAGGCGAAACCGTTGAACTAGAACGCCTGT
ATTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:643033..644037+

>Ggra1792.t1 ID=Ggra1792.t1|Name=Ggra1792.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00000050_pilon:643033..644037+ (Gracilaria gracilis GNS1m male)
ATGAAAGATGCGTCATGGAAGCAGACGGGAAAGCCTCGGTGTCCCCGCCG
AACTTTTGTGAATCCTGAAGAGGATGTTCCCTTTTTTTGCTTGTCATACA
AGCACGAGTCCGATATTAAGCCGCTAAACGCAGATGAGTTAATGGGTGCA
TTGAAGAAAGCGGCAGTATTGGCCGAAAGTTTGTATGGGAAGAGATGTTT
CAGAATATGGGTCGACCAGCTCGTGTTCGGGAGTACCCAAGGATGGGTTG
GCATAGGACTAGTGCCATACTTACTGTTCCCAACTGTTTTTGCGTCTGAA
GCCGAGAAGTCAACATCCAGCTCATGGATCTGTATGGAAAAGTTATGTTC
ACAGCTCATCGTGGGAGGTGACCTTAGCGGGTGTAGTGGTACCGAACTTT
GGAAAAATGTCGCGTGTTCCAATACTCTGTTAGAAAGCATTTCAGCCGTT
GCTGAGGTGGTTTCCAAACAAGAAGAAGATATAACGACCATGAGGTCCGA
TGATCTTGAATACCTTCATGATTGGGCCAGAGGTATTCTTTACGGGAAGT
ATGACAGTAGTCCCTACGAAGGAGCAAGGGAAGAACTAGGTCAACCTTGG
AATCTGGCTGAACACAAAAAGATGCACTATATAGCACTTTTCTCTCTGAG
AGCGAACGACAATTCTGTGTTGCGACACTATTACAGACAAAGAACCCATC
GATTCGAAAACGGAAAAGACGGTTGGAATATCAAGCATATTCTCTTCGAT
GCGAACCCGAAGGTGGAAAACTTCGCTCTACTAGAAAAGGTTACCATTGC
GGTGAAAGCGGAAGGGGCAGAAAATACCCTTGTGCTCGTGACACACTTCT
CCAATCAGAGCATATATACTCGTCTCAATGTGCTTTATCAGAACGATCAC
AAAATATGGGTTTCGTCAATGCACACAATCTCTGAGGAACAAGCAGAGGT
ATACATCAATTTGAAAGGTAAAGGCGAAACCGTTGAACTAGAACGCCTGT
ATTAG
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