Ggra179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra179.t1
Unique Name	Ggra179.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	523

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000158_pilon	contig	tig00000158_pilon:69908..71476 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1453501.JELR01000002_gene98
Max annot lvl	1236\|Gammaproteobacteria
Evalue	6.82e-75
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1QX4P@1224\|Proteobacteria,1T5MB@1236\|Gammaproteobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra179	Ggra179	Gracilaria gracilis GNS1m male	gene	tig00000158_pilon 69908..71476 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra179.t1.start1	Ggra179.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000158_pilon 69908..69910 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra179.t1.CDS1	Ggra179.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000158_pilon 69908..71476 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra179.t1.exon1	Ggra179.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000158_pilon 69908..71476 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra179.t1.stop1	Ggra179.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000158_pilon 71474..71476 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra179.t1	Ggra179.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000158_pilon 69908..71476 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000158_pilon:69908..71476+
coding sequence from alignment at tig00000158_pilon:69908..71476+

mRNA sequence

>Ggra179.t1 ID=Ggra179.t1|Name=Ggra179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=523bp
MRFIPLFLLFATLSFAQEKSPNTLEREQFLLPKVVMRIFDVILAEDLETP
QQFRGALYIDIAAWNAWSNYHPTAVDIFGRSRFKRPVCEHTIENKNIATV
FAIFRAYEASPQSFGGDSRISEFRKVIEELGYDPDDNSTDMTTPVGIGNR
AGRDTARLMVMDGWNSEGDLTGTQENYLQSFADYTGYEPKNNPWRIRFPF
KWQPLLENNGLGFFFRQESVTPFAGSAIAFSQTKQEMKSRKVRLPFARPN
APVHRALKRDVRLLKSLAMDVLNTSAHLTEEQRIYAELFDNKIKAFKQGD
DEVLGISTAIRFAILNPNLDFNIDQEMIYTLGSGIAAFDSMVAAWKEKRR
LDAVRPTGQTMKFLFGDSKVKVWGGPGKGAVEIDAGEWQPYIRTMPHAEF
PSGSACTCSTLVEHALINTNFTDYMPLEFTIPKGSSRFYPGEVPENDFVV
KIDRLSDWSKLCGQSRLWAGVHFPPSIEAGENLCRGIGKASQDVVDSLVA
GELDSKWLSWLPENVERFWEED*

spliced messenger RNA

>Ggra179.t1 ID=Ggra179.t1|Name=Ggra179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000158_pilon:69908..71476+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTCATCCCCTTATTCCTCTTGTTCGCCACGCTTTCTTTCGCGCA
AGAAAAGTCGCCCAACACACTCGAGCGCGAACAATTCCTTTTACCAAAGG
TGGTAATGCGAATCTTCGATGTCATCCTAGCAGAAGATCTCGAAACGCCG
CAGCAGTTCAGGGGCGCGCTTTACATCGACATCGCCGCTTGGAATGCGTG
GAGCAACTACCATCCCACTGCCGTTGACATTTTCGGACGCTCTCGCTTCA
AACGTCCGGTCTGTGAGCATACCATTGAGAACAAGAACATTGCCACCGTC
TTCGCCATCTTCCGAGCCTACGAGGCCTCGCCACAGAGCTTTGGCGGCGA
CTCTAGAATCTCCGAGTTCCGAAAGGTCATTGAAGAACTTGGCTATGATC
CGGATGACAACAGTACCGATATGACAACTCCGGTTGGTATCGGAAACAGG
GCCGGCCGTGATACGGCCCGCTTGATGGTCATGGATGGTTGGAATTCAGA
AGGTGATCTCACAGGAACTCAGGAAAACTACCTGCAATCCTTTGCTGACT
ACACTGGATACGAACCGAAGAACAACCCGTGGAGAATCAGGTTCCCATTC
AAGTGGCAACCATTGCTAGAAAACAATGGCCTCGGCTTCTTCTTCCGTCA
AGAGAGCGTCACACCGTTTGCAGGCTCCGCAATTGCATTCAGCCAGACCA
AGCAAGAGATGAAGAGCCGAAAGGTGAGGCTTCCGTTCGCCCGTCCCAAT
GCCCCTGTCCATAGGGCTTTGAAGCGCGATGTCCGTCTTCTGAAAAGCCT
TGCCATGGACGTGTTGAATACGTCTGCGCACCTAACTGAAGAACAGCGCA
TTTATGCAGAACTGTTTGACAACAAAATTAAGGCGTTCAAGCAAGGTGAC
GATGAGGTTCTAGGCATTTCCACAGCGATTAGATTTGCTATACTTAACCC
GAACCTTGACTTCAATATTGATCAAGAGATGATCTACACTCTCGGCTCAG
GAATTGCCGCCTTTGATTCTATGGTTGCTGCCTGGAAAGAGAAGCGTCGT
TTGGACGCCGTCCGACCCACAGGACAGACCATGAAGTTTTTGTTCGGGGA
CTCGAAGGTAAAGGTCTGGGGCGGTCCGGGCAAGGGAGCTGTTGAGATTG
ACGCTGGCGAATGGCAACCCTACATTAGAACCATGCCGCACGCAGAGTTT
CCATCTGGATCGGCTTGCACGTGCAGCACTCTTGTGGAACACGCTCTCAT
TAACACCAACTTTACTGATTACATGCCGCTCGAATTCACGATTCCGAAGG
GTTCAAGTAGGTTCTATCCTGGAGAAGTTCCGGAAAATGATTTTGTTGTT
AAGATCGATCGCCTGAGTGACTGGTCTAAGCTTTGTGGGCAGTCGCGTCT
GTGGGCCGGGGTGCATTTCCCGCCGTCTATTGAGGCCGGAGAGAATTTGT
GCCGTGGAATTGGAAAGGCATCGCAGGATGTCGTGGATAGCCTAGTTGCG
GGCGAATTGGATTCCAAGTGGCTGAGTTGGCTTCCGGAGAATGTGGAAAG
GTTCTGGGAAGAAGACTAA

protein sequence of Ggra179.t1

>Ggra179.t1 ID=Ggra179.t1|Name=Ggra179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=523bp
MRFIPLFLLFATLSFAQEKSPNTLEREQFLLPKVVMRIFDVILAEDLETP
QQFRGALYIDIAAWNAWSNYHPTAVDIFGRSRFKRPVCEHTIENKNIATV
FAIFRAYEASPQSFGGDSRISEFRKVIEELGYDPDDNSTDMTTPVGIGNR
AGRDTARLMVMDGWNSEGDLTGTQENYLQSFADYTGYEPKNNPWRIRFPF
KWQPLLENNGLGFFFRQESVTPFAGSAIAFSQTKQEMKSRKVRLPFARPN
APVHRALKRDVRLLKSLAMDVLNTSAHLTEEQRIYAELFDNKIKAFKQGD
DEVLGISTAIRFAILNPNLDFNIDQEMIYTLGSGIAAFDSMVAAWKEKRR
LDAVRPTGQTMKFLFGDSKVKVWGGPGKGAVEIDAGEWQPYIRTMPHAEF
PSGSACTCSTLVEHALINTNFTDYMPLEFTIPKGSSRFYPGEVPENDFVV
KIDRLSDWSKLCGQSRLWAGVHFPPSIEAGENLCRGIGKASQDVVDSLVA
GELDSKWLSWLPENVERFWEED*

mRNA from alignment at tig00000158_pilon:69908..71476+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra179.t1 ID=Ggra179.t1|Name=Ggra179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000158_pilon:69908..71476+ (Gracilaria gracilis GNS1m male)
ATGCGTTTCATCCCCTTATTCCTCTTGTTCGCCACGCTTTCTTTCGCGCA
AGAAAAGTCGCCCAACACACTCGAGCGCGAACAATTCCTTTTACCAAAGG
TGGTAATGCGAATCTTCGATGTCATCCTAGCAGAAGATCTCGAAACGCCG
CAGCAGTTCAGGGGCGCGCTTTACATCGACATCGCCGCTTGGAATGCGTG
GAGCAACTACCATCCCACTGCCGTTGACATTTTCGGACGCTCTCGCTTCA
AACGTCCGGTCTGTGAGCATACCATTGAGAACAAGAACATTGCCACCGTC
TTCGCCATCTTCCGAGCCTACGAGGCCTCGCCACAGAGCTTTGGCGGCGA
CTCTAGAATCTCCGAGTTCCGAAAGGTCATTGAAGAACTTGGCTATGATC
CGGATGACAACAGTACCGATATGACAACTCCGGTTGGTATCGGAAACAGG
GCCGGCCGTGATACGGCCCGCTTGATGGTCATGGATGGTTGGAATTCAGA
AGGTGATCTCACAGGAACTCAGGAAAACTACCTGCAATCCTTTGCTGACT
ACACTGGATACGAACCGAAGAACAACCCGTGGAGAATCAGGTTCCCATTC
AAGTGGCAACCATTGCTAGAAAACAATGGCCTCGGCTTCTTCTTCCGTCA
AGAGAGCGTCACACCGTTTGCAGGCTCCGCAATTGCATTCAGCCAGACCA
AGCAAGAGATGAAGAGCCGAAAGGTGAGGCTTCCGTTCGCCCGTCCCAAT
GCCCCTGTCCATAGGGCTTTGAAGCGCGATGTCCGTCTTCTGAAAAGCCT
TGCCATGGACGTGTTGAATACGTCTGCGCACCTAACTGAAGAACAGCGCA
TTTATGCAGAACTGTTTGACAACAAAATTAAGGCGTTCAAGCAAGGTGAC
GATGAGGTTCTAGGCATTTCCACAGCGATTAGATTTGCTATACTTAACCC
GAACCTTGACTTCAATATTGATCAAGAGATGATCTACACTCTCGGCTCAG
GAATTGCCGCCTTTGATTCTATGGTTGCTGCCTGGAAAGAGAAGCGTCGT
TTGGACGCCGTCCGACCCACAGGACAGACCATGAAGTTTTTGTTCGGGGA
CTCGAAGGTAAAGGTCTGGGGCGGTCCGGGCAAGGGAGCTGTTGAGATTG
ACGCTGGCGAATGGCAACCCTACATTAGAACCATGCCGCACGCAGAGTTT
CCATCTGGATCGGCTTGCACGTGCAGCACTCTTGTGGAACACGCTCTCAT
TAACACCAACTTTACTGATTACATGCCGCTCGAATTCACGATTCCGAAGG
GTTCAAGTAGGTTCTATCCTGGAGAAGTTCCGGAAAATGATTTTGTTGTT
AAGATCGATCGCCTGAGTGACTGGTCTAAGCTTTGTGGGCAGTCGCGTCT
GTGGGCCGGGGTGCATTTCCCGCCGTCTATTGAGGCCGGAGAGAATTTGT
GCCGTGGAATTGGAAAGGCATCGCAGGATGTCGTGGATAGCCTAGTTGCG
GGCGAATTGGATTCCAAGTGGCTGAGTTGGCTTCCGGAGAATGTGGAAAG
GTTCTGGGAAGAAGACTAA

Coding sequence (CDS) from alignment at tig00000158_pilon:69908..71476+

>Ggra179.t1 ID=Ggra179.t1|Name=Ggra179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000158_pilon:69908..71476+ (Gracilaria gracilis GNS1m male)
ATGCGTTTCATCCCCTTATTCCTCTTGTTCGCCACGCTTTCTTTCGCGCA
AGAAAAGTCGCCCAACACACTCGAGCGCGAACAATTCCTTTTACCAAAGG
TGGTAATGCGAATCTTCGATGTCATCCTAGCAGAAGATCTCGAAACGCCG
CAGCAGTTCAGGGGCGCGCTTTACATCGACATCGCCGCTTGGAATGCGTG
GAGCAACTACCATCCCACTGCCGTTGACATTTTCGGACGCTCTCGCTTCA
AACGTCCGGTCTGTGAGCATACCATTGAGAACAAGAACATTGCCACCGTC
TTCGCCATCTTCCGAGCCTACGAGGCCTCGCCACAGAGCTTTGGCGGCGA
CTCTAGAATCTCCGAGTTCCGAAAGGTCATTGAAGAACTTGGCTATGATC
CGGATGACAACAGTACCGATATGACAACTCCGGTTGGTATCGGAAACAGG
GCCGGCCGTGATACGGCCCGCTTGATGGTCATGGATGGTTGGAATTCAGA
AGGTGATCTCACAGGAACTCAGGAAAACTACCTGCAATCCTTTGCTGACT
ACACTGGATACGAACCGAAGAACAACCCGTGGAGAATCAGGTTCCCATTC
AAGTGGCAACCATTGCTAGAAAACAATGGCCTCGGCTTCTTCTTCCGTCA
AGAGAGCGTCACACCGTTTGCAGGCTCCGCAATTGCATTCAGCCAGACCA
AGCAAGAGATGAAGAGCCGAAAGGTGAGGCTTCCGTTCGCCCGTCCCAAT
GCCCCTGTCCATAGGGCTTTGAAGCGCGATGTCCGTCTTCTGAAAAGCCT
TGCCATGGACGTGTTGAATACGTCTGCGCACCTAACTGAAGAACAGCGCA
TTTATGCAGAACTGTTTGACAACAAAATTAAGGCGTTCAAGCAAGGTGAC
GATGAGGTTCTAGGCATTTCCACAGCGATTAGATTTGCTATACTTAACCC
GAACCTTGACTTCAATATTGATCAAGAGATGATCTACACTCTCGGCTCAG
GAATTGCCGCCTTTGATTCTATGGTTGCTGCCTGGAAAGAGAAGCGTCGT
TTGGACGCCGTCCGACCCACAGGACAGACCATGAAGTTTTTGTTCGGGGA
CTCGAAGGTAAAGGTCTGGGGCGGTCCGGGCAAGGGAGCTGTTGAGATTG
ACGCTGGCGAATGGCAACCCTACATTAGAACCATGCCGCACGCAGAGTTT
CCATCTGGATCGGCTTGCACGTGCAGCACTCTTGTGGAACACGCTCTCAT
TAACACCAACTTTACTGATTACATGCCGCTCGAATTCACGATTCCGAAGG
GTTCAAGTAGGTTCTATCCTGGAGAAGTTCCGGAAAATGATTTTGTTGTT
AAGATCGATCGCCTGAGTGACTGGTCTAAGCTTTGTGGGCAGTCGCGTCT
GTGGGCCGGGGTGCATTTCCCGCCGTCTATTGAGGCCGGAGAGAATTTGT
GCCGTGGAATTGGAAAGGCATCGCAGGATGTCGTGGATAGCCTAGTTGCG
GGCGAATTGGATTCCAAGTGGCTGAGTTGGCTTCCGGAGAATGTGGAAAG
GTTCTGGGAAGAAGACTAA