Ggra1788.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1788.t1
Unique NameGgra1788.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:626257..627402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705129.1
PFAMsAminotran_5
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00036
KEGG koko:K00831
KEGG ReactionR04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Evalue6.44e-187
EggNOG OGsCOG1932@1|root,2QS23@2759|Eukaryota
EC2.6.1.52
DescriptionO-phospho-L-serine:2-oxoglutarate aminotransferase activity
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1788Ggra1788Gracilaria gracilis GNS1m malegenetig00000050_pilon 626257..627402 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1788.t1.stop1Ggra1788.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 626257..626259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1788.t1.CDS1Ggra1788.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 626257..627402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1788.t1.exon1Ggra1788.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 626257..627402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1788.t1.start1Ggra1788.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 627400..627402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1788.t1Ggra1788.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 626257..627402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1788.t1 ID=Ggra1788.t1|Name=Ggra1788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MVVTASKPTTKPASPCFSSGPCKKRPGYELRSALGDAPLGRSHRSKLGKT
KLLEAITRTKKVLQIPDDYRVAIVPGSDTGAVEMAMWSMLGLKPLDVCYW
ESFGKGWLTDAVSHLALDEVNQFTVQEYGLLPDLSGVNKHHDVLFTFNGT
TSGVRVPEGLPFIADDRTGLSICDATSAVFAMHVPWNKVDVLTYSWQKVL
GGEAAHGMLVLSPRAVERLETYVPPRALPKVFRMTKKGKLDEALFQGNVI
NTVSMLCVEDYLDALKWCEQIGGLPALMERSQANLRELEQFVARNEWAHF
LAKEEAHRSNTSVCLTLDLAKEQVKQLEAMLAAEGVAFDINSYRDAPPGL
RVWCGATVEAADVRALTRWIEWAYAALQSAR*
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spliced messenger RNA

>Ggra1788.t1 ID=Ggra1788.t1|Name=Ggra1788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000050_pilon:626257..627402- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCACCGCGTCCAAGCCCACCACCAAGCCGGCGTCGCCGTGCTT
CTCGTCGGGGCCGTGCAAGAAGCGCCCGGGCTACGAGCTGCGCAGCGCGC
TGGGCGACGCGCCGCTCGGGCGCTCGCATCGCAGCAAGCTGGGCAAGACC
AAGCTGTTGGAAGCCATCACGCGCACCAAGAAGGTGCTACAGATCCCGGA
CGACTACCGCGTGGCCATTGTGCCGGGCAGCGACACGGGCGCCGTGGAGA
TGGCCATGTGGAGCATGCTGGGGCTCAAGCCGCTGGACGTGTGCTACTGG
GAGAGCTTTGGAAAGGGCTGGCTCACCGACGCCGTGTCGCACCTGGCGCT
CGATGAGGTGAACCAGTTCACCGTGCAAGAGTACGGCTTGTTGCCGGACT
TGTCGGGCGTCAACAAGCACCATGACGTGCTGTTCACGTTCAACGGCACC
ACGTCCGGCGTGCGCGTGCCGGAGGGGCTGCCGTTCATCGCCGACGACCG
CACGGGGCTGAGCATATGCGACGCCACGTCCGCTGTGTTCGCCATGCACG
TGCCGTGGAACAAGGTGGACGTGCTCACGTACTCGTGGCAAAAGGTGCTG
GGCGGCGAGGCGGCGCACGGCATGCTGGTGCTGTCGCCGCGAGCGGTAGA
GCGGCTGGAGACGTACGTACCGCCGCGCGCGCTGCCAAAGGTGTTCCGCA
TGACCAAGAAGGGCAAGCTGGACGAGGCGCTGTTCCAGGGCAACGTGATC
AACACGGTGTCCATGCTGTGCGTGGAGGACTACCTGGACGCGCTCAAGTG
GTGCGAGCAAATCGGCGGGCTGCCGGCGCTGATGGAGCGCTCGCAGGCGA
ACCTGCGCGAGCTGGAGCAGTTTGTGGCGCGCAACGAGTGGGCGCACTTC
CTGGCCAAGGAGGAGGCGCACCGCTCCAACACGTCGGTGTGTCTGACGCT
GGACCTGGCCAAGGAGCAGGTGAAGCAGCTGGAGGCGATGCTGGCCGCCG
AGGGCGTGGCGTTCGACATCAACTCGTACCGCGACGCGCCGCCCGGGCTG
CGCGTGTGGTGCGGCGCCACGGTGGAGGCGGCCGACGTGCGCGCGCTCAC
GCGCTGGATCGAGTGGGCGTACGCCGCGTTGCAGTCGGCGCGCTGA
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protein sequence of Ggra1788.t1

>Ggra1788.t1 ID=Ggra1788.t1|Name=Ggra1788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MVVTASKPTTKPASPCFSSGPCKKRPGYELRSALGDAPLGRSHRSKLGKT
KLLEAITRTKKVLQIPDDYRVAIVPGSDTGAVEMAMWSMLGLKPLDVCYW
ESFGKGWLTDAVSHLALDEVNQFTVQEYGLLPDLSGVNKHHDVLFTFNGT
TSGVRVPEGLPFIADDRTGLSICDATSAVFAMHVPWNKVDVLTYSWQKVL
GGEAAHGMLVLSPRAVERLETYVPPRALPKVFRMTKKGKLDEALFQGNVI
NTVSMLCVEDYLDALKWCEQIGGLPALMERSQANLRELEQFVARNEWAHF
LAKEEAHRSNTSVCLTLDLAKEQVKQLEAMLAAEGVAFDINSYRDAPPGL
RVWCGATVEAADVRALTRWIEWAYAALQSAR*
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mRNA from alignment at tig00000050_pilon:626257..627402-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1788.t1 ID=Ggra1788.t1|Name=Ggra1788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000050_pilon:626257..627402- (Gracilaria gracilis GNS1m male)
ATGGTTGTCACCGCGTCCAAGCCCACCACCAAGCCGGCGTCGCCGTGCTT
CTCGTCGGGGCCGTGCAAGAAGCGCCCGGGCTACGAGCTGCGCAGCGCGC
TGGGCGACGCGCCGCTCGGGCGCTCGCATCGCAGCAAGCTGGGCAAGACC
AAGCTGTTGGAAGCCATCACGCGCACCAAGAAGGTGCTACAGATCCCGGA
CGACTACCGCGTGGCCATTGTGCCGGGCAGCGACACGGGCGCCGTGGAGA
TGGCCATGTGGAGCATGCTGGGGCTCAAGCCGCTGGACGTGTGCTACTGG
GAGAGCTTTGGAAAGGGCTGGCTCACCGACGCCGTGTCGCACCTGGCGCT
CGATGAGGTGAACCAGTTCACCGTGCAAGAGTACGGCTTGTTGCCGGACT
TGTCGGGCGTCAACAAGCACCATGACGTGCTGTTCACGTTCAACGGCACC
ACGTCCGGCGTGCGCGTGCCGGAGGGGCTGCCGTTCATCGCCGACGACCG
CACGGGGCTGAGCATATGCGACGCCACGTCCGCTGTGTTCGCCATGCACG
TGCCGTGGAACAAGGTGGACGTGCTCACGTACTCGTGGCAAAAGGTGCTG
GGCGGCGAGGCGGCGCACGGCATGCTGGTGCTGTCGCCGCGAGCGGTAGA
GCGGCTGGAGACGTACGTACCGCCGCGCGCGCTGCCAAAGGTGTTCCGCA
TGACCAAGAAGGGCAAGCTGGACGAGGCGCTGTTCCAGGGCAACGTGATC
AACACGGTGTCCATGCTGTGCGTGGAGGACTACCTGGACGCGCTCAAGTG
GTGCGAGCAAATCGGCGGGCTGCCGGCGCTGATGGAGCGCTCGCAGGCGA
ACCTGCGCGAGCTGGAGCAGTTTGTGGCGCGCAACGAGTGGGCGCACTTC
CTGGCCAAGGAGGAGGCGCACCGCTCCAACACGTCGGTGTGTCTGACGCT
GGACCTGGCCAAGGAGCAGGTGAAGCAGCTGGAGGCGATGCTGGCCGCCG
AGGGCGTGGCGTTCGACATCAACTCGTACCGCGACGCGCCGCCCGGGCTG
CGCGTGTGGTGCGGCGCCACGGTGGAGGCGGCCGACGTGCGCGCGCTCAC
GCGCTGGATCGAGTGGGCGTACGCCGCGTTGCAGTCGGCGCGCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:626257..627402-

>Ggra1788.t1 ID=Ggra1788.t1|Name=Ggra1788.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000050_pilon:626257..627402- (Gracilaria gracilis GNS1m male)
ATGGTTGTCACCGCGTCCAAGCCCACCACCAAGCCGGCGTCGCCGTGCTT
CTCGTCGGGGCCGTGCAAGAAGCGCCCGGGCTACGAGCTGCGCAGCGCGC
TGGGCGACGCGCCGCTCGGGCGCTCGCATCGCAGCAAGCTGGGCAAGACC
AAGCTGTTGGAAGCCATCACGCGCACCAAGAAGGTGCTACAGATCCCGGA
CGACTACCGCGTGGCCATTGTGCCGGGCAGCGACACGGGCGCCGTGGAGA
TGGCCATGTGGAGCATGCTGGGGCTCAAGCCGCTGGACGTGTGCTACTGG
GAGAGCTTTGGAAAGGGCTGGCTCACCGACGCCGTGTCGCACCTGGCGCT
CGATGAGGTGAACCAGTTCACCGTGCAAGAGTACGGCTTGTTGCCGGACT
TGTCGGGCGTCAACAAGCACCATGACGTGCTGTTCACGTTCAACGGCACC
ACGTCCGGCGTGCGCGTGCCGGAGGGGCTGCCGTTCATCGCCGACGACCG
CACGGGGCTGAGCATATGCGACGCCACGTCCGCTGTGTTCGCCATGCACG
TGCCGTGGAACAAGGTGGACGTGCTCACGTACTCGTGGCAAAAGGTGCTG
GGCGGCGAGGCGGCGCACGGCATGCTGGTGCTGTCGCCGCGAGCGGTAGA
GCGGCTGGAGACGTACGTACCGCCGCGCGCGCTGCCAAAGGTGTTCCGCA
TGACCAAGAAGGGCAAGCTGGACGAGGCGCTGTTCCAGGGCAACGTGATC
AACACGGTGTCCATGCTGTGCGTGGAGGACTACCTGGACGCGCTCAAGTG
GTGCGAGCAAATCGGCGGGCTGCCGGCGCTGATGGAGCGCTCGCAGGCGA
ACCTGCGCGAGCTGGAGCAGTTTGTGGCGCGCAACGAGTGGGCGCACTTC
CTGGCCAAGGAGGAGGCGCACCGCTCCAACACGTCGGTGTGTCTGACGCT
GGACCTGGCCAAGGAGCAGGTGAAGCAGCTGGAGGCGATGCTGGCCGCCG
AGGGCGTGGCGTTCGACATCAACTCGTACCGCGACGCGCCGCCCGGGCTG
CGCGTGTGGTGCGGCGCCACGGTGGAGGCGGCCGACGTGCGCGCGCTCAC
GCGCTGGATCGAGTGGGCGTACGCCGCGTTGCAGTCGGCGCGCTGA
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