Ggra1787.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1787.t1
Unique NameGgra1787.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:624560..626041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_03752T1
Preferred nameRAD52
PFAMsRad52_Rad22
Max annot lvl4751|Fungi
KEGG koko:K10873
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000228,GO:0000278,GO:0000280,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000730,GO:0000733,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010520,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010792,GO:0010946,GO:0010947,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032502,GO:0032505,GO:0032991,GO:0032993,GO:0033043,GO:0033260,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040020,GO:0042221,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045002,GO:0045003,GO:0045005,GO:0045027,GO:0045128,GO:0045165,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097617,GO:0110026,GO:0110027,GO:0110029,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1990426,GO:1990505,GO:1990814,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020
Evalue1.93e-27
EggNOG OGsCOG5055@1|root,KOG4141@2759|Eukaryota,395YF@33154|Opisthokonta,3NXP6@4751|Fungi
DescriptionDNA repair and recombination protein
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1787Ggra1787Gracilaria gracilis GNS1m malegenetig00000050_pilon 624560..626041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1787.t1.stop1Ggra1787.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 624560..624562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1787.t1.CDS1Ggra1787.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 624560..626041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1787.t1.exon1Ggra1787.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 624560..626041 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1787.t1.start1Ggra1787.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 626039..626041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1787.t1Ggra1787.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 624560..626041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1787.t1 ID=Ggra1787.t1|Name=Ggra1787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MEHFALLDMAGSGGRGDDQHLGGGVKQEAQEEECKPSTHALRLGGKRKAE
WSPFGNAPFSEAETRVIRQRLNSGLTRSDTMQRRGPGGMSVTYLEGWRAI
HEANQIFGFNGWSSEIVQLEQRYVSESGGRYSACATATVRITLRDGCRRE
DRGGGVADNMRSKGDAILKAEKEAVTDATKRALAELCDCASDGVQPLYQR
QTRARACIARRARGRRAGVVVRRHGARPYRSGAAGAQHVQLGPSSSLELC
RAAAAGGVGSSTQQQRLRQHPARGRHLPAAAGTPTPSGRRPTARGRSRWE
EWQAATAAAAAPALARGRRRRTTASGKMGAAATATATAKQADIDALIALA
VGAGVTPAAAHDERSTYIRKDASVAPLQVRTRRDVRSGAAAFTCDAQPPR
QGALPLLFAADRRPPDCDGSRNACRAATASTATGGYAAGGRQVGAQLRVS
YLSESSPSLTSSLRRRPRRRLLPQRSRGDGAQPQAPVGDSYAR*
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spliced messenger RNA

>Ggra1787.t1 ID=Ggra1787.t1|Name=Ggra1787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000050_pilon:624560..626041- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACTTTGCGCTGCTAGACATGGCGGGCTCTGGCGGGCGCGGCGA
CGACCAGCACTTGGGTGGCGGCGTCAAGCAGGAGGCGCAGGAGGAGGAAT
GCAAGCCGAGCACACACGCGCTGCGGCTGGGCGGCAAGCGCAAGGCGGAG
TGGTCGCCGTTCGGCAACGCGCCCTTCTCCGAGGCGGAGACGCGCGTGAT
CCGGCAGCGGCTTAACTCGGGGCTGACGCGCAGCGACACGATGCAGCGGC
GCGGCCCCGGCGGCATGTCGGTGACGTATCTGGAGGGGTGGCGCGCAATC
CACGAGGCCAACCAGATCTTCGGCTTCAACGGCTGGTCGTCCGAGATCGT
GCAGCTTGAGCAGCGCTACGTGAGCGAGAGCGGCGGTCGTTACAGCGCGT
GCGCCACCGCTACGGTGCGTATCACGCTGCGCGACGGCTGCCGCCGCGAG
GACCGTGGCGGCGGCGTGGCCGATAATATGAGGAGCAAGGGAGATGCTAT
CCTCAAGGCGGAGAAGGAGGCGGTTACGGACGCTACTAAACGCGCGCTGG
CCGAACTTTGCGACTGCGCGTCGGACGGTGTGCAACCTCTTTACCAGCGT
CAGACCCGTGCGCGAGCCTGCATCGCGCGTCGCGCGCGCGGACGCCGCGC
GGGCGTCGTCGTGCGGCGTCACGGAGCACGCCCTTATCGGTCGGGCGCTG
CTGGTGCGCAGCACGTGCAGCTCGGCCCTAGCAGCTCGCTGGAACTTTGT
CGAGCTGCAGCTGCAGGAGGAGTCGGCAGCAGTACGCAGCAGCAGCGGCT
GAGGCAGCACCCGGCCCGAGGACGACATTTACCTGCGGCGGCCGGCACGC
CGACGCCGAGCGGGAGGCGGCCCACCGCGCGCGGCCGCTCGCGGTGGGAG
GAGTGGCAAGCGGCGACGGCGGCCGCGGCCGCTCCCGCCTTGGCTCGCGG
CCGGCGGCGGCGCACAACAGCGTCCGGCAAGATGGGCGCGGCCGCGACCG
CGACCGCGACCGCGAAACAGGCGGACATTGACGCGCTCATCGCGCTCGCG
GTCGGAGCTGGCGTGACGCCAGCAGCAGCTCATGATGAGCGATCGACGTA
CATACGTAAAGACGCCTCGGTGGCACCATTACAGGTGCGCACGCGGCGTG
ACGTGCGCTCCGGCGCTGCCGCTTTCACCTGTGACGCGCAGCCGCCGCGG
CAAGGCGCTTTGCCGTTGCTGTTTGCCGCTGACCGGCGACCGCCGGATTG
CGACGGCAGCAGAAACGCGTGTCGCGCAGCGACGGCGAGTACAGCGACCG
GAGGCTACGCCGCAGGTGGACGTCAAGTCGGTGCCCAGCTCCGAGTATCT
TACTTAAGTGAGTCGTCGCCGTCGCTGACGTCGTCGCTGCGTCGCCGGCC
TCGCCGTCGTCTGCTGCCGCAGCGCAGCCGCGGCGACGGCGCGCAGCCGC
AGGCCCCCGTCGGTGACAGCTATGCACGGTGA
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protein sequence of Ggra1787.t1

>Ggra1787.t1 ID=Ggra1787.t1|Name=Ggra1787.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MEHFALLDMAGSGGRGDDQHLGGGVKQEAQEEECKPSTHALRLGGKRKAE
WSPFGNAPFSEAETRVIRQRLNSGLTRSDTMQRRGPGGMSVTYLEGWRAI
HEANQIFGFNGWSSEIVQLEQRYVSESGGRYSACATATVRITLRDGCRRE
DRGGGVADNMRSKGDAILKAEKEAVTDATKRALAELCDCASDGVQPLYQR
QTRARACIARRARGRRAGVVVRRHGARPYRSGAAGAQHVQLGPSSSLELC
RAAAAGGVGSSTQQQRLRQHPARGRHLPAAAGTPTPSGRRPTARGRSRWE
EWQAATAAAAAPALARGRRRRTTASGKMGAAATATATAKQADIDALIALA
VGAGVTPAAAHDERSTYIRKDASVAPLQVRTRRDVRSGAAAFTCDAQPPR
QGALPLLFAADRRPPDCDGSRNACRAATASTATGGYAAGGRQVGAQLRVS
YLSESSPSLTSSLRRRPRRRLLPQRSRGDGAQPQAPVGDSYAR*
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mRNA from alignment at tig00000050_pilon:624560..626041-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1787.t1 ID=Ggra1787.t1|Name=Ggra1787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000050_pilon:624560..626041- (Gracilaria gracilis GNS1m male)
ATGGAGCACTTTGCGCTGCTAGACATGGCGGGCTCTGGCGGGCGCGGCGA
CGACCAGCACTTGGGTGGCGGCGTCAAGCAGGAGGCGCAGGAGGAGGAAT
GCAAGCCGAGCACACACGCGCTGCGGCTGGGCGGCAAGCGCAAGGCGGAG
TGGTCGCCGTTCGGCAACGCGCCCTTCTCCGAGGCGGAGACGCGCGTGAT
CCGGCAGCGGCTTAACTCGGGGCTGACGCGCAGCGACACGATGCAGCGGC
GCGGCCCCGGCGGCATGTCGGTGACGTATCTGGAGGGGTGGCGCGCAATC
CACGAGGCCAACCAGATCTTCGGCTTCAACGGCTGGTCGTCCGAGATCGT
GCAGCTTGAGCAGCGCTACGTGAGCGAGAGCGGCGGTCGTTACAGCGCGT
GCGCCACCGCTACGGTGCGTATCACGCTGCGCGACGGCTGCCGCCGCGAG
GACCGTGGCGGCGGCGTGGCCGATAATATGAGGAGCAAGGGAGATGCTAT
CCTCAAGGCGGAGAAGGAGGCGGTTACGGACGCTACTAAACGCGCGCTGG
CCGAACTTTGCGACTGCGCGTCGGACGGTGTGCAACCTCTTTACCAGCGT
CAGACCCGTGCGCGAGCCTGCATCGCGCGTCGCGCGCGCGGACGCCGCGC
GGGCGTCGTCGTGCGGCGTCACGGAGCACGCCCTTATCGGTCGGGCGCTG
CTGGTGCGCAGCACGTGCAGCTCGGCCCTAGCAGCTCGCTGGAACTTTGT
CGAGCTGCAGCTGCAGGAGGAGTCGGCAGCAGTACGCAGCAGCAGCGGCT
GAGGCAGCACCCGGCCCGAGGACGACATTTACCTGCGGCGGCCGGCACGC
CGACGCCGAGCGGGAGGCGGCCCACCGCGCGCGGCCGCTCGCGGTGGGAG
GAGTGGCAAGCGGCGACGGCGGCCGCGGCCGCTCCCGCCTTGGCTCGCGG
CCGGCGGCGGCGCACAACAGCGTCCGGCAAGATGGGCGCGGCCGCGACCG
CGACCGCGACCGCGAAACAGGCGGACATTGACGCGCTCATCGCGCTCGCG
GTCGGAGCTGGCGTGACGCCAGCAGCAGCTCATGATGAGCGATCGACGTA
CATACGTAAAGACGCCTCGGTGGCACCATTACAGGTGCGCACGCGGCGTG
ACGTGCGCTCCGGCGCTGCCGCTTTCACCTGTGACGCGCAGCCGCCGCGG
CAAGGCGCTTTGCCGTTGCTGTTTGCCGCTGACCGGCGACCGCCGGATTG
CGACGGCAGCAGAAACGCGTGTCGCGCAGCGACGGCGAGTACAGCGACCG
GAGGCTACGCCGCAGGTGGACGTCAAGTCGGTGCCCAGCTCCGAGTATCT
TACTTAAGTGAGTCGTCGCCGTCGCTGACGTCGTCGCTGCGTCGCCGGCC
TCGCCGTCGTCTGCTGCCGCAGCGCAGCCGCGGCGACGGCGCGCAGCCGC
AGGCCCCCGTCGGTGACAGCTATGCACGGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:624560..626041-

>Ggra1787.t1 ID=Ggra1787.t1|Name=Ggra1787.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000050_pilon:624560..626041- (Gracilaria gracilis GNS1m male)
ATGGAGCACTTTGCGCTGCTAGACATGGCGGGCTCTGGCGGGCGCGGCGA
CGACCAGCACTTGGGTGGCGGCGTCAAGCAGGAGGCGCAGGAGGAGGAAT
GCAAGCCGAGCACACACGCGCTGCGGCTGGGCGGCAAGCGCAAGGCGGAG
TGGTCGCCGTTCGGCAACGCGCCCTTCTCCGAGGCGGAGACGCGCGTGAT
CCGGCAGCGGCTTAACTCGGGGCTGACGCGCAGCGACACGATGCAGCGGC
GCGGCCCCGGCGGCATGTCGGTGACGTATCTGGAGGGGTGGCGCGCAATC
CACGAGGCCAACCAGATCTTCGGCTTCAACGGCTGGTCGTCCGAGATCGT
GCAGCTTGAGCAGCGCTACGTGAGCGAGAGCGGCGGTCGTTACAGCGCGT
GCGCCACCGCTACGGTGCGTATCACGCTGCGCGACGGCTGCCGCCGCGAG
GACCGTGGCGGCGGCGTGGCCGATAATATGAGGAGCAAGGGAGATGCTAT
CCTCAAGGCGGAGAAGGAGGCGGTTACGGACGCTACTAAACGCGCGCTGG
CCGAACTTTGCGACTGCGCGTCGGACGGTGTGCAACCTCTTTACCAGCGT
CAGACCCGTGCGCGAGCCTGCATCGCGCGTCGCGCGCGCGGACGCCGCGC
GGGCGTCGTCGTGCGGCGTCACGGAGCACGCCCTTATCGGTCGGGCGCTG
CTGGTGCGCAGCACGTGCAGCTCGGCCCTAGCAGCTCGCTGGAACTTTGT
CGAGCTGCAGCTGCAGGAGGAGTCGGCAGCAGTACGCAGCAGCAGCGGCT
GAGGCAGCACCCGGCCCGAGGACGACATTTACCTGCGGCGGCCGGCACGC
CGACGCCGAGCGGGAGGCGGCCCACCGCGCGCGGCCGCTCGCGGTGGGAG
GAGTGGCAAGCGGCGACGGCGGCCGCGGCCGCTCCCGCCTTGGCTCGCGG
CCGGCGGCGGCGCACAACAGCGTCCGGCAAGATGGGCGCGGCCGCGACCG
CGACCGCGACCGCGAAACAGGCGGACATTGACGCGCTCATCGCGCTCGCG
GTCGGAGCTGGCGTGACGCCAGCAGCAGCTCATGATGAGCGATCGACGTA
CATACGTAAAGACGCCTCGGTGGCACCATTACAGGTGCGCACGCGGCGTG
ACGTGCGCTCCGGCGCTGCCGCTTTCACCTGTGACGCGCAGCCGCCGCGG
CAAGGCGCTTTGCCGTTGCTGTTTGCCGCTGACCGGCGACCGCCGGATTG
CGACGGCAGCAGAAACGCGTGTCGCGCAGCGACGGCGAGTACAGCGACCG
GAGGCTACGCCGCAGGTGGACGTCAAGTCGGTGCCCAGCTCCGAGTATCT
TACTTAAGTGAGTCGTCGCCGTCGCTGACGTCGTCGCTGCGTCGCCGGCC
TCGCCGTCGTCTGCTGCCGCAGCGCAGCCGCGGCGACGGCGCGCAGCCGC
AGGCCCCCGTCGGTGACAGCTATGCACGGTGA
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