Ggra1783.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1783.t1
Unique NameGgra1783.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length71
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:614496..614883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003061801.1
PFAMsRibosomal_L38e
Max annot lvl3041|Chlorophyta
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue8.82e-27
EggNOG OGsKOG3499@1|root,KOG3499@2759|Eukaryota,37VZR@33090|Viridiplantae,34MZ2@3041|Chlorophyta
DescriptionBelongs to the eukaryotic ribosomal protein eL38 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1783Ggra1783Gracilaria gracilis GNS1m malegenetig00000050_pilon 614496..614883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1Ggra1783.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 614496..614883 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1.stop1Ggra1783.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 614496..614498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1.CDS1Ggra1783.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 614496..614518 -
Ggra1783.t1.CDS2Ggra1783.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 614597..614783 -
Ggra1783.t1.CDS3Ggra1783.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 614881..614883 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1.exon1Ggra1783.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 614496..614518 -
Ggra1783.t1.exon2Ggra1783.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 614597..614783 -
Ggra1783.t1.exon3Ggra1783.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 614881..614883 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1.intron1Ggra1783.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 614519..614596 -
Ggra1783.t1.intron2Ggra1783.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 614784..614880 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1.start1Ggra1783.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 614881..614883 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1783.t1 ID=Ggra1783.t1|Name=Ggra1783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=71bp
MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKD
NEKADKLTQSLPPGLQLKTV*
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spliced messenger RNA

>Ggra1783.t1 ID=Ggra1783.t1|Name=Ggra1783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp|location=Sequence derived from alignment at tig00000050_pilon:614496..614883- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAGCAAGTGTTCGAAATTAAGGACTTTCTCCTTGCCGCCCGTAG
AAAGGATGCTCGATGCGTGACCATCAAGAAGCAGAAGAGCGGTCCGCTCA
AGTTCAAGGTCCGCTGTTCCAAGTACCTTTACACCCTTGTCGTAAAGGAT
AACGAAAAGGCCGATAAGCTCACTCAGAGTTTACCACCAGGCCTGCAACT
TAAGACGGTATAA
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protein sequence of Ggra1783.t1

>Ggra1783.t1 ID=Ggra1783.t1|Name=Ggra1783.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=71bp
MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKD
NEKADKLTQSLPPGLQLKTV*
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mRNA from alignment at tig00000050_pilon:614496..614883-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1783.t1 ID=Ggra1783.t1|Name=Ggra1783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp|location=Sequence derived from alignment at tig00000050_pilon:614496..614883- (Gracilaria gracilis GNS1m male)
ATGGTAAGTCCTGCATTCTGCGTTTATTCTCGTCGATCCATCTGCATTAC
TTCATCATATTGACTCCGTATGCGTGCACGTCTCAATCGATCAATCGTAG
CCGAAGCAAGTGTTCGAAATTAAGGACTTTCTCCTTGCCGCCCGTAGAAA
GGATGCTCGATGCGTGACCATCAAGAAGCAGAAGAGCGGTCCGCTCAAGT
TCAAGGTCCGCTGTTCCAAGTACCTTTACACCCTTGTCGTAAAGGATAAC
GAAAAGGCCGATAAGCTCACTCAGAGTTTACCACCAGGTACGTTTCCGAA
CTTGATACTGCACTCACCACTTTTATCGCCCATAGTACTAACTGTGTTTG
AGTGCTGTTTTACAGGCCTGCAACTTAAGACGGTATAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:614496..614883-

>Ggra1783.t1 ID=Ggra1783.t1|Name=Ggra1783.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=213bp|location=Sequence derived from alignment at tig00000050_pilon:614496..614883- (Gracilaria gracilis GNS1m male)
ATGCCGAAGCAAGTGTTCGAAATTAAGGACTTTCTCCTTGCCGCCCGTAG
AAAGGATGCTCGATGCGTGACCATCAAGAAGCAGAAGAGCGGTCCGCTCA
AGTTCAAGGTCCGCTGTTCCAAGTACCTTTACACCCTTGTCGTAAAGGAT
AACGAAAAGGCCGATAAGCTCACTCAGAGTTTACCACCAGGCCTGCAACT
TAAGACGGTATAA
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