Ggra1778.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1778.t1
Unique Name	Ggra1778.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	440

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:600974..602293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S131_174V6.1
PFAMs	Abhydrolase_3,COesterase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00460,RC00461
KEGG ko	ko:K15889
KEGG Reaction	R09846
KEGG Pathway	ko00900,ko01120,ko01130,map00900,map01120,map01130
Evalue	9.51e-23
EggNOG OGs	COG2272@1\|root,KOG1516@2759\|Eukaryota,37HFQ@33090\|Viridiplantae,3G82E@35493\|Streptophyta
Description	Isoprenylcysteine alpha-carbonyl methylesterase
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1778	Ggra1778	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 600974..602293 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1778.t1.start1	Ggra1778.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 600974..600976 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1778.t1.CDS1	Ggra1778.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 600974..602293 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1778.t1.exon1	Ggra1778.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 600974..602293 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1778.t1.stop1	Ggra1778.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 602291..602293 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1778.t1	Ggra1778.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 600974..602293 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:600974..602293+
coding sequence from alignment at tig00000050_pilon:600974..602293+

mRNA sequence

>Ggra1778.t1 ID=Ggra1778.t1|Name=Ggra1778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
MTSKNRSKPKRESRPVFLNAAFQRVFRQKSWSRRFKSMVVISSFVLADVA
WWLSEGIWHIPGTLSAARHRDTIHLVKEDMPPALDVYAPPETRKHIMERL
NNEPDFNDVEQNVSNPVVLYVHGGAWGAGQSSHYSQLATKIVEVTHSPAL
VLSYRLYPNAIISDQVQDVTTALRRIRSSFPSRKVIVLAHSSGAHITSLA
LLKEAEKSQPTLLADVAIFTAGPFHLMHHFLFESQRGIALVSPMLPAAQA
ENDHTRFDEWSPTVIAEGFLKTLTLTDTSEYSVPALEGQLPAKNIHLPDP
TNGVVRIPFPKTYIMTSTCDTVVPMYSSLRFAAALRKTGLSCELLIYDFV
AHADWVLDWSVVTKPRDMSDILDTDKSDYLRRKACVTHLGGKEMASLMKE
EEQVIGTCPHVRDVLRIIKAVAEDGSQNSLTEIDEGIPG*

spliced messenger RNA

>Ggra1778.t1 ID=Ggra1778.t1|Name=Ggra1778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000050_pilon:600974..602293+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTAAAAACCGTTCGAAACCCAAGAGGGAGTCGCGACCCGTCTT
CCTCAATGCTGCTTTTCAGCGAGTGTTTCGACAGAAGTCATGGTCGCGGC
GTTTCAAATCCATGGTTGTCATCTCGTCCTTTGTGCTCGCTGACGTCGCA
TGGTGGCTCAGCGAAGGAATTTGGCACATACCTGGCACGCTTTCCGCCGC
AAGACATCGTGACACAATCCATCTTGTGAAAGAGGACATGCCACCGGCTT
TGGATGTCTACGCTCCACCTGAAACCCGAAAGCATATAATGGAGAGGCTG
AACAACGAGCCTGATTTCAATGACGTAGAACAAAATGTTTCCAACCCTGT
TGTGTTATATGTCCATGGCGGAGCCTGGGGTGCTGGTCAGTCCTCACATT
ATTCCCAGTTGGCCACTAAAATCGTAGAAGTAACACACTCGCCAGCCCTC
GTTTTGTCGTACCGTCTGTATCCGAATGCAATTATATCAGACCAAGTCCA
AGATGTTACGACTGCTCTACGTAGGATTCGCTCTTCGTTTCCGTCTCGAA
AAGTGATTGTTTTAGCACACTCGTCTGGCGCTCATATTACATCGTTGGCC
TTGCTAAAAGAAGCAGAAAAGTCGCAGCCTACCCTTCTCGCGGATGTTGC
CATATTCACGGCAGGGCCCTTCCACCTAATGCACCACTTTCTTTTCGAAT
CTCAAAGAGGAATTGCTTTGGTCTCTCCCATGCTACCAGCAGCTCAAGCA
GAAAACGATCATACAAGGTTTGATGAGTGGTCCCCGACAGTGATTGCTGA
AGGTTTTCTCAAAACGCTAACGCTGACAGATACTTCGGAGTACTCCGTGC
CGGCCCTTGAAGGCCAACTTCCAGCAAAGAACATTCACTTACCAGACCCA
ACTAACGGAGTGGTTAGAATACCGTTTCCGAAGACCTATATCATGACTTC
CACATGTGACACAGTGGTACCAATGTACAGCTCACTTCGATTCGCAGCGG
CGCTGCGAAAGACTGGTCTCTCCTGCGAGCTCCTAATTTATGATTTTGTT
GCCCACGCAGATTGGGTGCTTGACTGGTCAGTAGTGACGAAACCGCGCGA
TATGAGCGATATTCTTGACACTGATAAGTCTGACTATCTTAGAAGGAAGG
CATGTGTCACCCATCTGGGCGGGAAGGAAATGGCCTCATTAATGAAGGAA
GAGGAACAGGTCATAGGAACATGTCCCCATGTTCGTGACGTCCTGCGAAT
AATCAAGGCTGTGGCCGAAGATGGCAGCCAGAATAGTCTAACTGAGATTG
ATGAAGGTATTCCGGGATAA

protein sequence of Ggra1778.t1

>Ggra1778.t1 ID=Ggra1778.t1|Name=Ggra1778.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
MTSKNRSKPKRESRPVFLNAAFQRVFRQKSWSRRFKSMVVISSFVLADVA
WWLSEGIWHIPGTLSAARHRDTIHLVKEDMPPALDVYAPPETRKHIMERL
NNEPDFNDVEQNVSNPVVLYVHGGAWGAGQSSHYSQLATKIVEVTHSPAL
VLSYRLYPNAIISDQVQDVTTALRRIRSSFPSRKVIVLAHSSGAHITSLA
LLKEAEKSQPTLLADVAIFTAGPFHLMHHFLFESQRGIALVSPMLPAAQA
ENDHTRFDEWSPTVIAEGFLKTLTLTDTSEYSVPALEGQLPAKNIHLPDP
TNGVVRIPFPKTYIMTSTCDTVVPMYSSLRFAAALRKTGLSCELLIYDFV
AHADWVLDWSVVTKPRDMSDILDTDKSDYLRRKACVTHLGGKEMASLMKE
EEQVIGTCPHVRDVLRIIKAVAEDGSQNSLTEIDEGIPG*

mRNA from alignment at tig00000050_pilon:600974..602293+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1778.t1 ID=Ggra1778.t1|Name=Ggra1778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000050_pilon:600974..602293+ (Gracilaria gracilis GNS1m male)
ATGACATCTAAAAACCGTTCGAAACCCAAGAGGGAGTCGCGACCCGTCTT
CCTCAATGCTGCTTTTCAGCGAGTGTTTCGACAGAAGTCATGGTCGCGGC
GTTTCAAATCCATGGTTGTCATCTCGTCCTTTGTGCTCGCTGACGTCGCA
TGGTGGCTCAGCGAAGGAATTTGGCACATACCTGGCACGCTTTCCGCCGC
AAGACATCGTGACACAATCCATCTTGTGAAAGAGGACATGCCACCGGCTT
TGGATGTCTACGCTCCACCTGAAACCCGAAAGCATATAATGGAGAGGCTG
AACAACGAGCCTGATTTCAATGACGTAGAACAAAATGTTTCCAACCCTGT
TGTGTTATATGTCCATGGCGGAGCCTGGGGTGCTGGTCAGTCCTCACATT
ATTCCCAGTTGGCCACTAAAATCGTAGAAGTAACACACTCGCCAGCCCTC
GTTTTGTCGTACCGTCTGTATCCGAATGCAATTATATCAGACCAAGTCCA
AGATGTTACGACTGCTCTACGTAGGATTCGCTCTTCGTTTCCGTCTCGAA
AAGTGATTGTTTTAGCACACTCGTCTGGCGCTCATATTACATCGTTGGCC
TTGCTAAAAGAAGCAGAAAAGTCGCAGCCTACCCTTCTCGCGGATGTTGC
CATATTCACGGCAGGGCCCTTCCACCTAATGCACCACTTTCTTTTCGAAT
CTCAAAGAGGAATTGCTTTGGTCTCTCCCATGCTACCAGCAGCTCAAGCA
GAAAACGATCATACAAGGTTTGATGAGTGGTCCCCGACAGTGATTGCTGA
AGGTTTTCTCAAAACGCTAACGCTGACAGATACTTCGGAGTACTCCGTGC
CGGCCCTTGAAGGCCAACTTCCAGCAAAGAACATTCACTTACCAGACCCA
ACTAACGGAGTGGTTAGAATACCGTTTCCGAAGACCTATATCATGACTTC
CACATGTGACACAGTGGTACCAATGTACAGCTCACTTCGATTCGCAGCGG
CGCTGCGAAAGACTGGTCTCTCCTGCGAGCTCCTAATTTATGATTTTGTT
GCCCACGCAGATTGGGTGCTTGACTGGTCAGTAGTGACGAAACCGCGCGA
TATGAGCGATATTCTTGACACTGATAAGTCTGACTATCTTAGAAGGAAGG
CATGTGTCACCCATCTGGGCGGGAAGGAAATGGCCTCATTAATGAAGGAA
GAGGAACAGGTCATAGGAACATGTCCCCATGTTCGTGACGTCCTGCGAAT
AATCAAGGCTGTGGCCGAAGATGGCAGCCAGAATAGTCTAACTGAGATTG
ATGAAGGTATTCCGGGATAA

Coding sequence (CDS) from alignment at tig00000050_pilon:600974..602293+

>Ggra1778.t1 ID=Ggra1778.t1|Name=Ggra1778.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000050_pilon:600974..602293+ (Gracilaria gracilis GNS1m male)
ATGACATCTAAAAACCGTTCGAAACCCAAGAGGGAGTCGCGACCCGTCTT
CCTCAATGCTGCTTTTCAGCGAGTGTTTCGACAGAAGTCATGGTCGCGGC
GTTTCAAATCCATGGTTGTCATCTCGTCCTTTGTGCTCGCTGACGTCGCA
TGGTGGCTCAGCGAAGGAATTTGGCACATACCTGGCACGCTTTCCGCCGC
AAGACATCGTGACACAATCCATCTTGTGAAAGAGGACATGCCACCGGCTT
TGGATGTCTACGCTCCACCTGAAACCCGAAAGCATATAATGGAGAGGCTG
AACAACGAGCCTGATTTCAATGACGTAGAACAAAATGTTTCCAACCCTGT
TGTGTTATATGTCCATGGCGGAGCCTGGGGTGCTGGTCAGTCCTCACATT
ATTCCCAGTTGGCCACTAAAATCGTAGAAGTAACACACTCGCCAGCCCTC
GTTTTGTCGTACCGTCTGTATCCGAATGCAATTATATCAGACCAAGTCCA
AGATGTTACGACTGCTCTACGTAGGATTCGCTCTTCGTTTCCGTCTCGAA
AAGTGATTGTTTTAGCACACTCGTCTGGCGCTCATATTACATCGTTGGCC
TTGCTAAAAGAAGCAGAAAAGTCGCAGCCTACCCTTCTCGCGGATGTTGC
CATATTCACGGCAGGGCCCTTCCACCTAATGCACCACTTTCTTTTCGAAT
CTCAAAGAGGAATTGCTTTGGTCTCTCCCATGCTACCAGCAGCTCAAGCA
GAAAACGATCATACAAGGTTTGATGAGTGGTCCCCGACAGTGATTGCTGA
AGGTTTTCTCAAAACGCTAACGCTGACAGATACTTCGGAGTACTCCGTGC
CGGCCCTTGAAGGCCAACTTCCAGCAAAGAACATTCACTTACCAGACCCA
ACTAACGGAGTGGTTAGAATACCGTTTCCGAAGACCTATATCATGACTTC
CACATGTGACACAGTGGTACCAATGTACAGCTCACTTCGATTCGCAGCGG
CGCTGCGAAAGACTGGTCTCTCCTGCGAGCTCCTAATTTATGATTTTGTT
GCCCACGCAGATTGGGTGCTTGACTGGTCAGTAGTGACGAAACCGCGCGA
TATGAGCGATATTCTTGACACTGATAAGTCTGACTATCTTAGAAGGAAGG
CATGTGTCACCCATCTGGGCGGGAAGGAAATGGCCTCATTAATGAAGGAA
GAGGAACAGGTCATAGGAACATGTCCCCATGTTCGTGACGTCCTGCGAAT
AATCAAGGCTGTGGCCGAAGATGGCAGCCAGAATAGTCTAACTGAGATTG
ATGAAGGTATTCCGGGATAA