Ggra1777.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1777.t1
Unique Name	Ggra1777.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	750

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:597881..600130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH262CT
PFAMs	Bromodomain,DUF3591
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03125
KEGG Pathway	ko03022,map03022
Evalue	5.86e-16
EggNOG OGs	COG5179@1\|root,KOG0008@2759\|Eukaryota
Description	negative regulation of protein autoubiquitination
COG category	K
BRITE	ko00000,ko00001,ko01001,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1777	Ggra1777	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 597881..600130 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1777.t1.stop1	Ggra1777.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 597881..597883 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1777.t1.CDS1	Ggra1777.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 597881..600130 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1777.t1.exon1	Ggra1777.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 597881..600130 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1777.t1.start1	Ggra1777.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 600128..600130 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1777.t1	Ggra1777.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 597881..600130 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:597881..600130-
coding sequence from alignment at tig00000050_pilon:597881..600130-

mRNA sequence

>Ggra1777.t1 ID=Ggra1777.t1|Name=Ggra1777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp
MVDNGDVRLQLDDLEAEEARIMRELREMDEKAEAEKAASSRRADQIREDP
EAALASLLLECEKEVRDAKGFIADQGPPLKIVRLKHGETGPRSATYLSRP
RNTGVDFTVPVTLKAYTDLIKHPIFLNQIREKIKSRKYRSTDEYLDDMGL
LVRNTAQFNKGPDLAWVVQHAKFLLEAAEDAVRSRRHTFHQVVQQLQHAV
PSKPSKSSQGTLAAVGKRKRTQSTEKTNGDVVSVPPVGSSIEIYWHPNRK
WYVAYITERDGSSVNVRYQEDNSEQLVDLNRERWRMRSTRTATRSKRVTE
PASKRRKGAAVTPTAQTEPVLTAPGLTHEDLDSIKIDLFAKFEDLRDSVN
EQLKQHLDRVDSAILRSDALTRILVQLGDTQSSVETALSTIFDKFEKLER
RFESVFQSQEQNRTQGETREMKMIENIERTNVEDKESNKTTLENEVMKED
VAKPECDPSNIEEGQSTQNLSNVHAVGKEDMDATDLRIKENQTKGAEDND
APILVSDDEDPKVADKADAPPDEKQISVKNGEDAVEQDVTLPKEDLASAQ
PNPDRISESDNGDVMDVDEAPKTDEKQSPQKHKAEKSPVVRASRKTVSVD
AGTTETPIRTETNDDNEKTKPNEASEDGDGSESSSGSEEFEESESDQEMK
TDAGSKSKTALKEPRKAKPSRFGNRADIEKKENRLESPEAKEDKNEMHLN
QENGVSESKDKQKENADQPNTGEAEGSTNVLQHDRIVAKEKEGVKSGGT*

spliced messenger RNA

>Ggra1777.t1 ID=Ggra1777.t1|Name=Ggra1777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000050_pilon:597881..600130- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACAACGGCGACGTGCGTCTTCAGTTGGATGACCTCGAAGCCGA
AGAAGCGCGTATTATGCGCGAGCTTCGAGAAATGGACGAGAAGGCCGAGG
CTGAGAAGGCTGCAAGCAGTCGAAGAGCAGATCAAATCCGCGAAGACCCG
GAAGCCGCGTTAGCCTCATTGTTGCTTGAATGCGAGAAGGAAGTGAGAGA
CGCAAAGGGCTTCATTGCTGACCAGGGCCCACCTCTCAAGATTGTACGCC
TTAAACATGGCGAGACGGGTCCACGTTCTGCCACATACTTGTCAAGACCA
CGAAATACCGGCGTTGACTTTACTGTGCCCGTTACTCTCAAAGCGTACAC
CGACCTCATCAAACACCCTATTTTTCTTAACCAAATCCGCGAAAAGATAA
AGTCGCGAAAGTATCGGTCGACTGATGAATATCTTGACGACATGGGGCTT
CTCGTACGGAACACTGCCCAGTTTAACAAAGGACCCGATCTAGCGTGGGT
TGTTCAACACGCAAAGTTTCTTCTCGAGGCGGCTGAAGATGCAGTACGTT
CGCGCCGTCATACATTTCATCAAGTGGTGCAACAACTTCAGCATGCTGTA
CCTTCAAAGCCATCGAAATCGAGTCAAGGTACCCTTGCAGCTGTTGGCAA
GCGGAAACGCACGCAGTCCACCGAAAAAACAAACGGGGATGTTGTATCTG
TACCACCTGTAGGTTCGTCCATTGAGATTTATTGGCACCCCAATAGGAAG
TGGTATGTTGCGTATATCACAGAGCGCGACGGTTCATCTGTTAACGTTCG
TTACCAAGAAGATAACTCAGAACAATTGGTAGACTTGAACCGTGAGCGTT
GGCGAATGAGAAGCACCCGTACTGCAACGCGTTCGAAACGGGTCACGGAA
CCAGCAAGTAAGCGCAGGAAGGGAGCCGCAGTTACCCCAACAGCCCAAAC
TGAGCCTGTATTGACTGCGCCGGGTCTCACCCATGAAGACTTGGACTCGA
TCAAAATTGATTTGTTTGCGAAGTTTGAGGATTTACGTGATTCGGTGAAC
GAACAATTGAAGCAACATCTCGACCGAGTGGACTCTGCAATATTGCGTTC
TGATGCTTTGACCCGTATTTTAGTACAGCTCGGCGATACTCAGAGCAGCG
TAGAGACCGCACTTAGTACTATCTTTGACAAGTTTGAGAAACTAGAACGA
AGATTTGAGTCTGTGTTTCAGTCTCAAGAACAAAACCGCACTCAAGGGGA
AACTCGGGAAATGAAAATGATTGAAAACATAGAACGTACTAATGTTGAAG
ACAAAGAAAGTAACAAAACAACTCTGGAAAACGAAGTGATGAAGGAAGAC
GTCGCGAAGCCTGAATGTGATCCATCTAATATCGAAGAGGGACAGAGTAC
ACAAAATTTGTCAAATGTACATGCGGTAGGCAAGGAAGATATGGACGCTA
CGGACCTACGTATCAAAGAAAATCAGACGAAGGGCGCTGAAGACAATGAC
GCCCCTATACTTGTTTCTGATGATGAAGACCCTAAAGTTGCTGATAAAGC
GGATGCGCCTCCAGATGAAAAGCAGATTTCCGTCAAGAACGGCGAAGACG
CAGTCGAACAAGATGTGACGCTTCCGAAAGAAGACTTGGCGAGTGCCCAA
CCAAATCCAGATAGAATAAGTGAAAGCGATAACGGAGACGTTATGGACGT
GGATGAAGCGCCCAAAACAGATGAAAAACAGTCCCCTCAGAAGCATAAGG
CAGAAAAGTCGCCTGTGGTTCGTGCAAGCCGAAAAACCGTCTCCGTAGAT
GCTGGTACAACTGAAACACCGATCAGAACTGAAACGAATGATGATAATGA
GAAAACTAAGCCTAATGAAGCTTCTGAGGACGGTGATGGAAGTGAGAGCT
CCTCAGGGTCTGAGGAATTCGAAGAATCTGAAAGTGATCAGGAGATGAAG
ACGGATGCAGGTTCCAAGTCTAAGACGGCACTGAAGGAACCTCGAAAAGC
AAAACCATCGAGATTTGGAAATCGAGCAGATATCGAGAAGAAAGAAAATC
GCCTTGAGTCACCAGAAGCGAAAGAAGATAAGAATGAAATGCATCTAAAC
CAAGAAAATGGTGTAAGCGAGAGCAAGGACAAGCAGAAGGAGAATGCCGA
TCAGCCTAATACGGGAGAGGCAGAGGGCAGTACGAATGTACTACAACACG
ATCGGATAGTTGCCAAAGAAAAAGAAGGAGTGAAATCTGGGGGCACTTAA

protein sequence of Ggra1777.t1

>Ggra1777.t1 ID=Ggra1777.t1|Name=Ggra1777.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=750bp
MVDNGDVRLQLDDLEAEEARIMRELREMDEKAEAEKAASSRRADQIREDP
EAALASLLLECEKEVRDAKGFIADQGPPLKIVRLKHGETGPRSATYLSRP
RNTGVDFTVPVTLKAYTDLIKHPIFLNQIREKIKSRKYRSTDEYLDDMGL
LVRNTAQFNKGPDLAWVVQHAKFLLEAAEDAVRSRRHTFHQVVQQLQHAV
PSKPSKSSQGTLAAVGKRKRTQSTEKTNGDVVSVPPVGSSIEIYWHPNRK
WYVAYITERDGSSVNVRYQEDNSEQLVDLNRERWRMRSTRTATRSKRVTE
PASKRRKGAAVTPTAQTEPVLTAPGLTHEDLDSIKIDLFAKFEDLRDSVN
EQLKQHLDRVDSAILRSDALTRILVQLGDTQSSVETALSTIFDKFEKLER
RFESVFQSQEQNRTQGETREMKMIENIERTNVEDKESNKTTLENEVMKED
VAKPECDPSNIEEGQSTQNLSNVHAVGKEDMDATDLRIKENQTKGAEDND
APILVSDDEDPKVADKADAPPDEKQISVKNGEDAVEQDVTLPKEDLASAQ
PNPDRISESDNGDVMDVDEAPKTDEKQSPQKHKAEKSPVVRASRKTVSVD
AGTTETPIRTETNDDNEKTKPNEASEDGDGSESSSGSEEFEESESDQEMK
TDAGSKSKTALKEPRKAKPSRFGNRADIEKKENRLESPEAKEDKNEMHLN
QENGVSESKDKQKENADQPNTGEAEGSTNVLQHDRIVAKEKEGVKSGGT*

mRNA from alignment at tig00000050_pilon:597881..600130-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1777.t1 ID=Ggra1777.t1|Name=Ggra1777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000050_pilon:597881..600130- (Gracilaria gracilis GNS1m male)
ATGGTGGACAACGGCGACGTGCGTCTTCAGTTGGATGACCTCGAAGCCGA
AGAAGCGCGTATTATGCGCGAGCTTCGAGAAATGGACGAGAAGGCCGAGG
CTGAGAAGGCTGCAAGCAGTCGAAGAGCAGATCAAATCCGCGAAGACCCG
GAAGCCGCGTTAGCCTCATTGTTGCTTGAATGCGAGAAGGAAGTGAGAGA
CGCAAAGGGCTTCATTGCTGACCAGGGCCCACCTCTCAAGATTGTACGCC
TTAAACATGGCGAGACGGGTCCACGTTCTGCCACATACTTGTCAAGACCA
CGAAATACCGGCGTTGACTTTACTGTGCCCGTTACTCTCAAAGCGTACAC
CGACCTCATCAAACACCCTATTTTTCTTAACCAAATCCGCGAAAAGATAA
AGTCGCGAAAGTATCGGTCGACTGATGAATATCTTGACGACATGGGGCTT
CTCGTACGGAACACTGCCCAGTTTAACAAAGGACCCGATCTAGCGTGGGT
TGTTCAACACGCAAAGTTTCTTCTCGAGGCGGCTGAAGATGCAGTACGTT
CGCGCCGTCATACATTTCATCAAGTGGTGCAACAACTTCAGCATGCTGTA
CCTTCAAAGCCATCGAAATCGAGTCAAGGTACCCTTGCAGCTGTTGGCAA
GCGGAAACGCACGCAGTCCACCGAAAAAACAAACGGGGATGTTGTATCTG
TACCACCTGTAGGTTCGTCCATTGAGATTTATTGGCACCCCAATAGGAAG
TGGTATGTTGCGTATATCACAGAGCGCGACGGTTCATCTGTTAACGTTCG
TTACCAAGAAGATAACTCAGAACAATTGGTAGACTTGAACCGTGAGCGTT
GGCGAATGAGAAGCACCCGTACTGCAACGCGTTCGAAACGGGTCACGGAA
CCAGCAAGTAAGCGCAGGAAGGGAGCCGCAGTTACCCCAACAGCCCAAAC
TGAGCCTGTATTGACTGCGCCGGGTCTCACCCATGAAGACTTGGACTCGA
TCAAAATTGATTTGTTTGCGAAGTTTGAGGATTTACGTGATTCGGTGAAC
GAACAATTGAAGCAACATCTCGACCGAGTGGACTCTGCAATATTGCGTTC
TGATGCTTTGACCCGTATTTTAGTACAGCTCGGCGATACTCAGAGCAGCG
TAGAGACCGCACTTAGTACTATCTTTGACAAGTTTGAGAAACTAGAACGA
AGATTTGAGTCTGTGTTTCAGTCTCAAGAACAAAACCGCACTCAAGGGGA
AACTCGGGAAATGAAAATGATTGAAAACATAGAACGTACTAATGTTGAAG
ACAAAGAAAGTAACAAAACAACTCTGGAAAACGAAGTGATGAAGGAAGAC
GTCGCGAAGCCTGAATGTGATCCATCTAATATCGAAGAGGGACAGAGTAC
ACAAAATTTGTCAAATGTACATGCGGTAGGCAAGGAAGATATGGACGCTA
CGGACCTACGTATCAAAGAAAATCAGACGAAGGGCGCTGAAGACAATGAC
GCCCCTATACTTGTTTCTGATGATGAAGACCCTAAAGTTGCTGATAAAGC
GGATGCGCCTCCAGATGAAAAGCAGATTTCCGTCAAGAACGGCGAAGACG
CAGTCGAACAAGATGTGACGCTTCCGAAAGAAGACTTGGCGAGTGCCCAA
CCAAATCCAGATAGAATAAGTGAAAGCGATAACGGAGACGTTATGGACGT
GGATGAAGCGCCCAAAACAGATGAAAAACAGTCCCCTCAGAAGCATAAGG
CAGAAAAGTCGCCTGTGGTTCGTGCAAGCCGAAAAACCGTCTCCGTAGAT
GCTGGTACAACTGAAACACCGATCAGAACTGAAACGAATGATGATAATGA
GAAAACTAAGCCTAATGAAGCTTCTGAGGACGGTGATGGAAGTGAGAGCT
CCTCAGGGTCTGAGGAATTCGAAGAATCTGAAAGTGATCAGGAGATGAAG
ACGGATGCAGGTTCCAAGTCTAAGACGGCACTGAAGGAACCTCGAAAAGC
AAAACCATCGAGATTTGGAAATCGAGCAGATATCGAGAAGAAAGAAAATC
GCCTTGAGTCACCAGAAGCGAAAGAAGATAAGAATGAAATGCATCTAAAC
CAAGAAAATGGTGTAAGCGAGAGCAAGGACAAGCAGAAGGAGAATGCCGA
TCAGCCTAATACGGGAGAGGCAGAGGGCAGTACGAATGTACTACAACACG
ATCGGATAGTTGCCAAAGAAAAAGAAGGAGTGAAATCTGGGGGCACTTAA

Coding sequence (CDS) from alignment at tig00000050_pilon:597881..600130-

>Ggra1777.t1 ID=Ggra1777.t1|Name=Ggra1777.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2250bp|location=Sequence derived from alignment at tig00000050_pilon:597881..600130- (Gracilaria gracilis GNS1m male)
ATGGTGGACAACGGCGACGTGCGTCTTCAGTTGGATGACCTCGAAGCCGA
AGAAGCGCGTATTATGCGCGAGCTTCGAGAAATGGACGAGAAGGCCGAGG
CTGAGAAGGCTGCAAGCAGTCGAAGAGCAGATCAAATCCGCGAAGACCCG
GAAGCCGCGTTAGCCTCATTGTTGCTTGAATGCGAGAAGGAAGTGAGAGA
CGCAAAGGGCTTCATTGCTGACCAGGGCCCACCTCTCAAGATTGTACGCC
TTAAACATGGCGAGACGGGTCCACGTTCTGCCACATACTTGTCAAGACCA
CGAAATACCGGCGTTGACTTTACTGTGCCCGTTACTCTCAAAGCGTACAC
CGACCTCATCAAACACCCTATTTTTCTTAACCAAATCCGCGAAAAGATAA
AGTCGCGAAAGTATCGGTCGACTGATGAATATCTTGACGACATGGGGCTT
CTCGTACGGAACACTGCCCAGTTTAACAAAGGACCCGATCTAGCGTGGGT
TGTTCAACACGCAAAGTTTCTTCTCGAGGCGGCTGAAGATGCAGTACGTT
CGCGCCGTCATACATTTCATCAAGTGGTGCAACAACTTCAGCATGCTGTA
CCTTCAAAGCCATCGAAATCGAGTCAAGGTACCCTTGCAGCTGTTGGCAA
GCGGAAACGCACGCAGTCCACCGAAAAAACAAACGGGGATGTTGTATCTG
TACCACCTGTAGGTTCGTCCATTGAGATTTATTGGCACCCCAATAGGAAG
TGGTATGTTGCGTATATCACAGAGCGCGACGGTTCATCTGTTAACGTTCG
TTACCAAGAAGATAACTCAGAACAATTGGTAGACTTGAACCGTGAGCGTT
GGCGAATGAGAAGCACCCGTACTGCAACGCGTTCGAAACGGGTCACGGAA
CCAGCAAGTAAGCGCAGGAAGGGAGCCGCAGTTACCCCAACAGCCCAAAC
TGAGCCTGTATTGACTGCGCCGGGTCTCACCCATGAAGACTTGGACTCGA
TCAAAATTGATTTGTTTGCGAAGTTTGAGGATTTACGTGATTCGGTGAAC
GAACAATTGAAGCAACATCTCGACCGAGTGGACTCTGCAATATTGCGTTC
TGATGCTTTGACCCGTATTTTAGTACAGCTCGGCGATACTCAGAGCAGCG
TAGAGACCGCACTTAGTACTATCTTTGACAAGTTTGAGAAACTAGAACGA
AGATTTGAGTCTGTGTTTCAGTCTCAAGAACAAAACCGCACTCAAGGGGA
AACTCGGGAAATGAAAATGATTGAAAACATAGAACGTACTAATGTTGAAG
ACAAAGAAAGTAACAAAACAACTCTGGAAAACGAAGTGATGAAGGAAGAC
GTCGCGAAGCCTGAATGTGATCCATCTAATATCGAAGAGGGACAGAGTAC
ACAAAATTTGTCAAATGTACATGCGGTAGGCAAGGAAGATATGGACGCTA
CGGACCTACGTATCAAAGAAAATCAGACGAAGGGCGCTGAAGACAATGAC
GCCCCTATACTTGTTTCTGATGATGAAGACCCTAAAGTTGCTGATAAAGC
GGATGCGCCTCCAGATGAAAAGCAGATTTCCGTCAAGAACGGCGAAGACG
CAGTCGAACAAGATGTGACGCTTCCGAAAGAAGACTTGGCGAGTGCCCAA
CCAAATCCAGATAGAATAAGTGAAAGCGATAACGGAGACGTTATGGACGT
GGATGAAGCGCCCAAAACAGATGAAAAACAGTCCCCTCAGAAGCATAAGG
CAGAAAAGTCGCCTGTGGTTCGTGCAAGCCGAAAAACCGTCTCCGTAGAT
GCTGGTACAACTGAAACACCGATCAGAACTGAAACGAATGATGATAATGA
GAAAACTAAGCCTAATGAAGCTTCTGAGGACGGTGATGGAAGTGAGAGCT
CCTCAGGGTCTGAGGAATTCGAAGAATCTGAAAGTGATCAGGAGATGAAG
ACGGATGCAGGTTCCAAGTCTAAGACGGCACTGAAGGAACCTCGAAAAGC
AAAACCATCGAGATTTGGAAATCGAGCAGATATCGAGAAGAAAGAAAATC
GCCTTGAGTCACCAGAAGCGAAAGAAGATAAGAATGAAATGCATCTAAAC
CAAGAAAATGGTGTAAGCGAGAGCAAGGACAAGCAGAAGGAGAATGCCGA
TCAGCCTAATACGGGAGAGGCAGAGGGCAGTACGAATGTACTACAACACG
ATCGGATAGTTGCCAAAGAAAAAGAAGGAGTGAAATCTGGGGGCACTTAA