Ggra1774.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1774.t1
Unique NameGgra1774.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:593931..594698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1265313.HRUBRA_01078
PFAMsRhodanese
Max annot lvl1224|Proteobacteria
Evalue6.26e-11
EggNOG OGsCOG0607@1|root,COG0607@2|Bacteria,1NPYY@1224|Proteobacteria
DescriptionRhodanese Homology Domain
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1774Ggra1774Gracilaria gracilis GNS1m malegenetig00000050_pilon 593931..594698 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1774.t1.start1Ggra1774.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 593931..593933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1774.t1.CDS1Ggra1774.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 593931..594698 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1774.t1.exon1Ggra1774.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 593931..594698 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1774.t1.stop1Ggra1774.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 594696..594698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1774.t1Ggra1774.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 593931..594698 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1774.t1 ID=Ggra1774.t1|Name=Ggra1774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=256bp
MGIARSRASAFLRAPLFNKAVHADRVQSLTIQLSPRRRALFVAGGLNRLV
SEPERLARTSLQPRMSTTPIEEKRRKATQLKTRVRSLTFPVPYLSHSRFK
QLREAGTPLLIIDAREPEEISVSTIPSAVSVHAAHEHIGNLQQAHGDDFN
VVCYCTVGFRSGLYAKSLFAVAKNIYNYSLMEHLWGDGTLISSQEEEQTR
VHLYSRHYESYFPDKYPAEAFGGMTAILRGLSHLPSLLSVVAGKKLHLEE
EPIGS*
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spliced messenger RNA

>Ggra1774.t1 ID=Ggra1774.t1|Name=Ggra1774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000050_pilon:593931..594698+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATCGCACGCAGCCGGGCCTCTGCGTTCCTGAGAGCCCCATTGTT
TAATAAGGCAGTTCACGCAGATCGTGTGCAGTCACTAACCATTCAATTGT
CGCCACGCCGTCGGGCTCTGTTTGTGGCTGGAGGGCTGAACCGCCTCGTT
TCTGAGCCTGAGAGGCTGGCACGGACCTCACTGCAACCAAGGATGTCAAC
TACCCCAATCGAAGAGAAGCGTCGGAAAGCAACTCAATTGAAAACACGCG
TCCGGTCTCTTACTTTTCCCGTTCCCTATCTTTCTCATTCTCGATTCAAA
CAGCTGCGTGAAGCAGGCACCCCATTGCTGATAATCGATGCCCGAGAACC
AGAAGAAATATCCGTCAGCACAATCCCTTCAGCCGTTTCTGTTCATGCGG
CTCATGAACACATCGGTAATCTACAACAAGCCCATGGAGATGATTTCAAC
GTCGTGTGCTACTGCACCGTGGGCTTTCGTTCCGGACTCTATGCTAAGAG
CCTTTTCGCCGTCGCTAAAAACATCTACAACTACAGTCTAATGGAACACC
TGTGGGGTGATGGAACGCTGATTTCTAGTCAAGAAGAAGAACAAACTCGC
GTTCATTTATATTCAAGACACTACGAATCTTACTTCCCCGACAAATACCC
AGCTGAAGCTTTTGGAGGAATGACTGCCATACTGCGAGGCCTTAGCCATT
TGCCAAGCTTACTATCGGTCGTAGCTGGCAAAAAACTTCACCTTGAAGAA
GAGCCAATAGGTTCTTAA
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protein sequence of Ggra1774.t1

>Ggra1774.t1 ID=Ggra1774.t1|Name=Ggra1774.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=256bp
MGIARSRASAFLRAPLFNKAVHADRVQSLTIQLSPRRRALFVAGGLNRLV
SEPERLARTSLQPRMSTTPIEEKRRKATQLKTRVRSLTFPVPYLSHSRFK
QLREAGTPLLIIDAREPEEISVSTIPSAVSVHAAHEHIGNLQQAHGDDFN
VVCYCTVGFRSGLYAKSLFAVAKNIYNYSLMEHLWGDGTLISSQEEEQTR
VHLYSRHYESYFPDKYPAEAFGGMTAILRGLSHLPSLLSVVAGKKLHLEE
EPIGS*
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mRNA from alignment at tig00000050_pilon:593931..594698+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1774.t1 ID=Ggra1774.t1|Name=Ggra1774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000050_pilon:593931..594698+ (Gracilaria gracilis GNS1m male)
ATGGGTATCGCACGCAGCCGGGCCTCTGCGTTCCTGAGAGCCCCATTGTT
TAATAAGGCAGTTCACGCAGATCGTGTGCAGTCACTAACCATTCAATTGT
CGCCACGCCGTCGGGCTCTGTTTGTGGCTGGAGGGCTGAACCGCCTCGTT
TCTGAGCCTGAGAGGCTGGCACGGACCTCACTGCAACCAAGGATGTCAAC
TACCCCAATCGAAGAGAAGCGTCGGAAAGCAACTCAATTGAAAACACGCG
TCCGGTCTCTTACTTTTCCCGTTCCCTATCTTTCTCATTCTCGATTCAAA
CAGCTGCGTGAAGCAGGCACCCCATTGCTGATAATCGATGCCCGAGAACC
AGAAGAAATATCCGTCAGCACAATCCCTTCAGCCGTTTCTGTTCATGCGG
CTCATGAACACATCGGTAATCTACAACAAGCCCATGGAGATGATTTCAAC
GTCGTGTGCTACTGCACCGTGGGCTTTCGTTCCGGACTCTATGCTAAGAG
CCTTTTCGCCGTCGCTAAAAACATCTACAACTACAGTCTAATGGAACACC
TGTGGGGTGATGGAACGCTGATTTCTAGTCAAGAAGAAGAACAAACTCGC
GTTCATTTATATTCAAGACACTACGAATCTTACTTCCCCGACAAATACCC
AGCTGAAGCTTTTGGAGGAATGACTGCCATACTGCGAGGCCTTAGCCATT
TGCCAAGCTTACTATCGGTCGTAGCTGGCAAAAAACTTCACCTTGAAGAA
GAGCCAATAGGTTCTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:593931..594698+

>Ggra1774.t1 ID=Ggra1774.t1|Name=Ggra1774.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00000050_pilon:593931..594698+ (Gracilaria gracilis GNS1m male)
ATGGGTATCGCACGCAGCCGGGCCTCTGCGTTCCTGAGAGCCCCATTGTT
TAATAAGGCAGTTCACGCAGATCGTGTGCAGTCACTAACCATTCAATTGT
CGCCACGCCGTCGGGCTCTGTTTGTGGCTGGAGGGCTGAACCGCCTCGTT
TCTGAGCCTGAGAGGCTGGCACGGACCTCACTGCAACCAAGGATGTCAAC
TACCCCAATCGAAGAGAAGCGTCGGAAAGCAACTCAATTGAAAACACGCG
TCCGGTCTCTTACTTTTCCCGTTCCCTATCTTTCTCATTCTCGATTCAAA
CAGCTGCGTGAAGCAGGCACCCCATTGCTGATAATCGATGCCCGAGAACC
AGAAGAAATATCCGTCAGCACAATCCCTTCAGCCGTTTCTGTTCATGCGG
CTCATGAACACATCGGTAATCTACAACAAGCCCATGGAGATGATTTCAAC
GTCGTGTGCTACTGCACCGTGGGCTTTCGTTCCGGACTCTATGCTAAGAG
CCTTTTCGCCGTCGCTAAAAACATCTACAACTACAGTCTAATGGAACACC
TGTGGGGTGATGGAACGCTGATTTCTAGTCAAGAAGAAGAACAAACTCGC
GTTCATTTATATTCAAGACACTACGAATCTTACTTCCCCGACAAATACCC
AGCTGAAGCTTTTGGAGGAATGACTGCCATACTGCGAGGCCTTAGCCATT
TGCCAAGCTTACTATCGGTCGTAGCTGGCAAAAAACTTCACCTTGAAGAA
GAGCCAATAGGTTCTTAA
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