Ggra1766.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1766.t1
Unique NameGgra1766.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:572754..574013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo127192
PFAMsGcd10p
Max annot lvl4776|Peronosporales
KEGG koko:K03256
Evalue4.19e-61
EggNOG OGsKOG1416@1|root,KOG1416@2759|Eukaryota,3Q944@4776|Peronosporales
DescriptionGcd10p family
COG categoryJ
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1766Ggra1766Gracilaria gracilis GNS1m malegenetig00000050_pilon 572754..574013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1766.t1.stop1Ggra1766.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 572754..572756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1766.t1.CDS1Ggra1766.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 572754..574013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1766.t1.exon1Ggra1766.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 572754..574013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1766.t1.start1Ggra1766.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 574011..574013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1766.t1Ggra1766.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 572754..574013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1766.t1 ID=Ggra1766.t1|Name=Ggra1766.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MGSASMENTICENDWAVLQSTDGRKVLGNVTKTSTARIGKRKRKISALLG
KQWGDTFAVAPDDSLQPVPDVLEETPDETDMDTGRTNQYLQDDNENQRLR
QAAIQKLKEEGVHGEQLVQTVVKHSSTFENKTPFSQQKYLQRKRAKFDIR
VRVLKPTALTLCETYFEKSPEKTLHLRPDALGIVLGYSGVRSGARVLLYE
NCTGLLTGAVAERLGGIGRVLNVFTGNTPPAIEIVRMLNLGPSGMRTIVH
TPIELFSKLDVQEKEDDQPLKYGAKEEDGDSTPPETTHQPSAKRAEAIAQ
RSRRGMVKGWLREGCDCLIVATRYDVVQVFDTLLKHVAPSGCFAAYCTHL
QDAADLQYALQLSKMAIRVELMEVNLVNHQILPGRSHPAMTDSATGGYVV
TGIRIVSPNEEQSEDYSSE*
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spliced messenger RNA

>Ggra1766.t1 ID=Ggra1766.t1|Name=Ggra1766.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000050_pilon:572754..574013- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCAGCGTCAATGGAGAACACTATATGCGAAAACGACTGGGCCGT
CTTACAATCAACGGATGGACGGAAAGTATTAGGAAACGTGACAAAGACTT
CAACAGCTCGAATCGGCAAACGCAAACGGAAAATATCCGCCCTCCTTGGC
AAACAATGGGGCGATACTTTTGCGGTCGCCCCCGATGATTCGTTGCAACC
CGTTCCAGACGTCCTTGAAGAAACTCCTGACGAGACGGATATGGACACCG
GCCGAACTAATCAATACTTACAAGATGACAACGAAAACCAAAGATTGCGC
CAAGCCGCAATTCAGAAGCTCAAAGAGGAAGGCGTCCATGGTGAACAGCT
TGTACAAACCGTCGTCAAGCATTCTTCAACCTTTGAGAACAAAACACCAT
TTTCTCAACAAAAGTACCTTCAGCGCAAACGTGCAAAGTTCGACATTCGC
GTGCGGGTACTGAAACCAACTGCACTAACACTGTGCGAGACGTACTTCGA
AAAGTCCCCAGAAAAAACACTGCACCTACGACCAGACGCATTGGGAATCG
TACTAGGGTACTCTGGTGTTCGGTCTGGAGCTCGTGTCTTGCTGTATGAA
AACTGTACTGGGTTATTGACAGGCGCAGTTGCGGAACGCTTAGGGGGAAT
TGGACGTGTTCTTAACGTCTTCACTGGGAATACGCCGCCGGCTATAGAAA
TCGTCCGCATGCTCAATCTAGGACCAAGTGGTATGCGGACAATCGTACAC
ACACCAATCGAGTTGTTCAGCAAACTTGATGTTCAAGAAAAGGAGGACGA
CCAACCTCTTAAATACGGTGCGAAGGAAGAAGACGGGGACTCTACTCCGC
CTGAAACGACACACCAACCCAGTGCAAAGCGTGCTGAGGCAATTGCACAA
CGTTCCAGACGCGGGATGGTGAAGGGATGGTTAAGAGAAGGTTGTGACTG
CTTGATTGTAGCTACTCGATATGATGTAGTGCAAGTGTTCGATACGCTTC
TAAAGCACGTCGCGCCTTCAGGATGTTTTGCAGCGTACTGCACGCACTTG
CAAGACGCGGCGGATCTTCAGTACGCCTTGCAACTGTCAAAAATGGCCAT
TCGTGTAGAACTGATGGAGGTGAATTTGGTAAACCATCAAATTCTACCCG
GACGATCCCATCCTGCGATGACAGACAGTGCTACTGGGGGATATGTAGTA
ACTGGAATTCGAATCGTTTCACCCAACGAAGAGCAATCAGAAGACTATTC
GTCAGAGTAG
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protein sequence of Ggra1766.t1

>Ggra1766.t1 ID=Ggra1766.t1|Name=Ggra1766.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MGSASMENTICENDWAVLQSTDGRKVLGNVTKTSTARIGKRKRKISALLG
KQWGDTFAVAPDDSLQPVPDVLEETPDETDMDTGRTNQYLQDDNENQRLR
QAAIQKLKEEGVHGEQLVQTVVKHSSTFENKTPFSQQKYLQRKRAKFDIR
VRVLKPTALTLCETYFEKSPEKTLHLRPDALGIVLGYSGVRSGARVLLYE
NCTGLLTGAVAERLGGIGRVLNVFTGNTPPAIEIVRMLNLGPSGMRTIVH
TPIELFSKLDVQEKEDDQPLKYGAKEEDGDSTPPETTHQPSAKRAEAIAQ
RSRRGMVKGWLREGCDCLIVATRYDVVQVFDTLLKHVAPSGCFAAYCTHL
QDAADLQYALQLSKMAIRVELMEVNLVNHQILPGRSHPAMTDSATGGYVV
TGIRIVSPNEEQSEDYSSE*
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mRNA from alignment at tig00000050_pilon:572754..574013-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1766.t1 ID=Ggra1766.t1|Name=Ggra1766.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000050_pilon:572754..574013- (Gracilaria gracilis GNS1m male)
ATGGGTTCAGCGTCAATGGAGAACACTATATGCGAAAACGACTGGGCCGT
CTTACAATCAACGGATGGACGGAAAGTATTAGGAAACGTGACAAAGACTT
CAACAGCTCGAATCGGCAAACGCAAACGGAAAATATCCGCCCTCCTTGGC
AAACAATGGGGCGATACTTTTGCGGTCGCCCCCGATGATTCGTTGCAACC
CGTTCCAGACGTCCTTGAAGAAACTCCTGACGAGACGGATATGGACACCG
GCCGAACTAATCAATACTTACAAGATGACAACGAAAACCAAAGATTGCGC
CAAGCCGCAATTCAGAAGCTCAAAGAGGAAGGCGTCCATGGTGAACAGCT
TGTACAAACCGTCGTCAAGCATTCTTCAACCTTTGAGAACAAAACACCAT
TTTCTCAACAAAAGTACCTTCAGCGCAAACGTGCAAAGTTCGACATTCGC
GTGCGGGTACTGAAACCAACTGCACTAACACTGTGCGAGACGTACTTCGA
AAAGTCCCCAGAAAAAACACTGCACCTACGACCAGACGCATTGGGAATCG
TACTAGGGTACTCTGGTGTTCGGTCTGGAGCTCGTGTCTTGCTGTATGAA
AACTGTACTGGGTTATTGACAGGCGCAGTTGCGGAACGCTTAGGGGGAAT
TGGACGTGTTCTTAACGTCTTCACTGGGAATACGCCGCCGGCTATAGAAA
TCGTCCGCATGCTCAATCTAGGACCAAGTGGTATGCGGACAATCGTACAC
ACACCAATCGAGTTGTTCAGCAAACTTGATGTTCAAGAAAAGGAGGACGA
CCAACCTCTTAAATACGGTGCGAAGGAAGAAGACGGGGACTCTACTCCGC
CTGAAACGACACACCAACCCAGTGCAAAGCGTGCTGAGGCAATTGCACAA
CGTTCCAGACGCGGGATGGTGAAGGGATGGTTAAGAGAAGGTTGTGACTG
CTTGATTGTAGCTACTCGATATGATGTAGTGCAAGTGTTCGATACGCTTC
TAAAGCACGTCGCGCCTTCAGGATGTTTTGCAGCGTACTGCACGCACTTG
CAAGACGCGGCGGATCTTCAGTACGCCTTGCAACTGTCAAAAATGGCCAT
TCGTGTAGAACTGATGGAGGTGAATTTGGTAAACCATCAAATTCTACCCG
GACGATCCCATCCTGCGATGACAGACAGTGCTACTGGGGGATATGTAGTA
ACTGGAATTCGAATCGTTTCACCCAACGAAGAGCAATCAGAAGACTATTC
GTCAGAGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:572754..574013-

>Ggra1766.t1 ID=Ggra1766.t1|Name=Ggra1766.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000050_pilon:572754..574013- (Gracilaria gracilis GNS1m male)
ATGGGTTCAGCGTCAATGGAGAACACTATATGCGAAAACGACTGGGCCGT
CTTACAATCAACGGATGGACGGAAAGTATTAGGAAACGTGACAAAGACTT
CAACAGCTCGAATCGGCAAACGCAAACGGAAAATATCCGCCCTCCTTGGC
AAACAATGGGGCGATACTTTTGCGGTCGCCCCCGATGATTCGTTGCAACC
CGTTCCAGACGTCCTTGAAGAAACTCCTGACGAGACGGATATGGACACCG
GCCGAACTAATCAATACTTACAAGATGACAACGAAAACCAAAGATTGCGC
CAAGCCGCAATTCAGAAGCTCAAAGAGGAAGGCGTCCATGGTGAACAGCT
TGTACAAACCGTCGTCAAGCATTCTTCAACCTTTGAGAACAAAACACCAT
TTTCTCAACAAAAGTACCTTCAGCGCAAACGTGCAAAGTTCGACATTCGC
GTGCGGGTACTGAAACCAACTGCACTAACACTGTGCGAGACGTACTTCGA
AAAGTCCCCAGAAAAAACACTGCACCTACGACCAGACGCATTGGGAATCG
TACTAGGGTACTCTGGTGTTCGGTCTGGAGCTCGTGTCTTGCTGTATGAA
AACTGTACTGGGTTATTGACAGGCGCAGTTGCGGAACGCTTAGGGGGAAT
TGGACGTGTTCTTAACGTCTTCACTGGGAATACGCCGCCGGCTATAGAAA
TCGTCCGCATGCTCAATCTAGGACCAAGTGGTATGCGGACAATCGTACAC
ACACCAATCGAGTTGTTCAGCAAACTTGATGTTCAAGAAAAGGAGGACGA
CCAACCTCTTAAATACGGTGCGAAGGAAGAAGACGGGGACTCTACTCCGC
CTGAAACGACACACCAACCCAGTGCAAAGCGTGCTGAGGCAATTGCACAA
CGTTCCAGACGCGGGATGGTGAAGGGATGGTTAAGAGAAGGTTGTGACTG
CTTGATTGTAGCTACTCGATATGATGTAGTGCAAGTGTTCGATACGCTTC
TAAAGCACGTCGCGCCTTCAGGATGTTTTGCAGCGTACTGCACGCACTTG
CAAGACGCGGCGGATCTTCAGTACGCCTTGCAACTGTCAAAAATGGCCAT
TCGTGTAGAACTGATGGAGGTGAATTTGGTAAACCATCAAATTCTACCCG
GACGATCCCATCCTGCGATGACAGACAGTGCTACTGGGGGATATGTAGTA
ACTGGAATTCGAATCGTTTCACCCAACGAAGAGCAATCAGAAGACTATTC
GTCAGAGTAG
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