Ggra1763.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1763.t1
Unique NameGgra1763.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:567581..568339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1763Ggra1763Gracilaria gracilis GNS1m malegenetig00000050_pilon 567581..568339 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1763.t1.stop1Ggra1763.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 567581..567583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1763.t1.CDS1Ggra1763.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 567581..568339 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1763.t1.exon1Ggra1763.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 567581..568339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1763.t1.start1Ggra1763.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 568337..568339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1763.t1Ggra1763.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 567581..568339 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1763.t1 ID=Ggra1763.t1|Name=Ggra1763.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MNAFILSPTSRALLVRNRTLDAGCASQNRSNTQPRPRYVMSQRTPPRKVN
WMKMAIVMASTAVGSSNLANIKTFSFNPARPVHAATTDAAQTRSNQPIPL
EMLGIKREDYVGERELRRRKTTQLSEAEQEIMELEEWEVATQWFRNMQAL
WAATASVGGIYLLYRGGVMWENWIKEQERKDMEEEIKLTGTFIDPRAVRK
DEGKKDGKKRNKPKDDSASGPSAGPSPPTKDPSDGDAPPGGVDSLEKLFG
NS*
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spliced messenger RNA

>Ggra1763.t1 ID=Ggra1763.t1|Name=Ggra1763.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000050_pilon:567581..568339- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCTTCATACTTTCGCCAACATCAAGGGCTTTGCTGGTTCGGAA
CCGAACGTTGGACGCCGGATGTGCGAGTCAAAATAGGTCAAACACCCAGC
CAAGGCCGCGCTATGTAATGTCCCAAAGAACTCCACCAAGAAAAGTCAAC
TGGATGAAGATGGCTATTGTCATGGCAAGCACTGCAGTAGGTTCTTCAAA
CCTTGCAAATATAAAAACGTTCTCATTCAACCCAGCGCGTCCTGTACACG
CTGCAACTACGGATGCGGCTCAAACTCGATCCAACCAACCTATCCCGCTT
GAAATGCTGGGCATCAAGCGTGAGGACTACGTCGGTGAGCGCGAACTACG
AAGAAGGAAGACTACACAATTATCGGAAGCCGAGCAAGAAATCATGGAGC
TTGAAGAATGGGAGGTGGCAACTCAATGGTTCCGTAATATGCAAGCGCTT
TGGGCCGCCACTGCTAGTGTTGGTGGAATTTACCTCCTTTATCGGGGTGG
CGTTATGTGGGAGAATTGGATCAAGGAACAAGAGAGGAAGGATATGGAAG
AAGAAATCAAGCTCACTGGTACTTTCATCGATCCAAGGGCTGTTAGAAAG
GACGAAGGAAAGAAGGATGGCAAGAAGCGAAACAAACCGAAGGACGATTC
CGCCAGTGGACCTTCTGCAGGGCCATCACCCCCTACAAAGGATCCGTCTG
ATGGTGATGCACCTCCCGGCGGAGTTGATTCCCTTGAAAAGCTGTTTGGT
AACAGTTAG
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protein sequence of Ggra1763.t1

>Ggra1763.t1 ID=Ggra1763.t1|Name=Ggra1763.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MNAFILSPTSRALLVRNRTLDAGCASQNRSNTQPRPRYVMSQRTPPRKVN
WMKMAIVMASTAVGSSNLANIKTFSFNPARPVHAATTDAAQTRSNQPIPL
EMLGIKREDYVGERELRRRKTTQLSEAEQEIMELEEWEVATQWFRNMQAL
WAATASVGGIYLLYRGGVMWENWIKEQERKDMEEEIKLTGTFIDPRAVRK
DEGKKDGKKRNKPKDDSASGPSAGPSPPTKDPSDGDAPPGGVDSLEKLFG
NS*
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mRNA from alignment at tig00000050_pilon:567581..568339-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1763.t1 ID=Ggra1763.t1|Name=Ggra1763.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000050_pilon:567581..568339- (Gracilaria gracilis GNS1m male)
ATGAATGCCTTCATACTTTCGCCAACATCAAGGGCTTTGCTGGTTCGGAA
CCGAACGTTGGACGCCGGATGTGCGAGTCAAAATAGGTCAAACACCCAGC
CAAGGCCGCGCTATGTAATGTCCCAAAGAACTCCACCAAGAAAAGTCAAC
TGGATGAAGATGGCTATTGTCATGGCAAGCACTGCAGTAGGTTCTTCAAA
CCTTGCAAATATAAAAACGTTCTCATTCAACCCAGCGCGTCCTGTACACG
CTGCAACTACGGATGCGGCTCAAACTCGATCCAACCAACCTATCCCGCTT
GAAATGCTGGGCATCAAGCGTGAGGACTACGTCGGTGAGCGCGAACTACG
AAGAAGGAAGACTACACAATTATCGGAAGCCGAGCAAGAAATCATGGAGC
TTGAAGAATGGGAGGTGGCAACTCAATGGTTCCGTAATATGCAAGCGCTT
TGGGCCGCCACTGCTAGTGTTGGTGGAATTTACCTCCTTTATCGGGGTGG
CGTTATGTGGGAGAATTGGATCAAGGAACAAGAGAGGAAGGATATGGAAG
AAGAAATCAAGCTCACTGGTACTTTCATCGATCCAAGGGCTGTTAGAAAG
GACGAAGGAAAGAAGGATGGCAAGAAGCGAAACAAACCGAAGGACGATTC
CGCCAGTGGACCTTCTGCAGGGCCATCACCCCCTACAAAGGATCCGTCTG
ATGGTGATGCACCTCCCGGCGGAGTTGATTCCCTTGAAAAGCTGTTTGGT
AACAGTTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:567581..568339-

>Ggra1763.t1 ID=Ggra1763.t1|Name=Ggra1763.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000050_pilon:567581..568339- (Gracilaria gracilis GNS1m male)
ATGAATGCCTTCATACTTTCGCCAACATCAAGGGCTTTGCTGGTTCGGAA
CCGAACGTTGGACGCCGGATGTGCGAGTCAAAATAGGTCAAACACCCAGC
CAAGGCCGCGCTATGTAATGTCCCAAAGAACTCCACCAAGAAAAGTCAAC
TGGATGAAGATGGCTATTGTCATGGCAAGCACTGCAGTAGGTTCTTCAAA
CCTTGCAAATATAAAAACGTTCTCATTCAACCCAGCGCGTCCTGTACACG
CTGCAACTACGGATGCGGCTCAAACTCGATCCAACCAACCTATCCCGCTT
GAAATGCTGGGCATCAAGCGTGAGGACTACGTCGGTGAGCGCGAACTACG
AAGAAGGAAGACTACACAATTATCGGAAGCCGAGCAAGAAATCATGGAGC
TTGAAGAATGGGAGGTGGCAACTCAATGGTTCCGTAATATGCAAGCGCTT
TGGGCCGCCACTGCTAGTGTTGGTGGAATTTACCTCCTTTATCGGGGTGG
CGTTATGTGGGAGAATTGGATCAAGGAACAAGAGAGGAAGGATATGGAAG
AAGAAATCAAGCTCACTGGTACTTTCATCGATCCAAGGGCTGTTAGAAAG
GACGAAGGAAAGAAGGATGGCAAGAAGCGAAACAAACCGAAGGACGATTC
CGCCAGTGGACCTTCTGCAGGGCCATCACCCCCTACAAAGGATCCGTCTG
ATGGTGATGCACCTCCCGGCGGAGTTGATTCCCTTGAAAAGCTGTTTGGT
AACAGTTAG
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