Ggra176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra176.t1
Unique NameGgra176.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000158_piloncontigtig00000158_pilon:46750..48482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr6P01860_001
PFAMsANF_receptor,Lig_chan,SBP_bac_3
Max annot lvl35493|Streptophyta
KEGG koko:K05387
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
Evalue1.64e-07
EggNOG OGsKOG1052@1|root,KOG1052@2759|Eukaryota,37K5G@33090|Viridiplantae,3GEFA@35493|Streptophyta
DescriptionGlutamate-gated receptor that probably acts as non- selective cation channel
COG categoryEPT
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra176Ggra176Gracilaria gracilis GNS1m malegenetig00000158_pilon 46750..48482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1Ggra176.t1Gracilaria gracilis GNS1m malepolypeptidetig00000158_pilon 46750..48482 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1.start1Ggra176.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000158_pilon 46750..46752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1.CDS1Ggra176.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000158_pilon 46750..46797 +
Ggra176.t1.CDS2Ggra176.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000158_pilon 46880..47408 +
Ggra176.t1.CDS3Ggra176.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000158_pilon 47505..47634 +
Ggra176.t1.CDS4Ggra176.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000158_pilon 47730..47870 +
Ggra176.t1.CDS5Ggra176.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000158_pilon 47945..48482 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1.exon1Ggra176.t1.exon1Gracilaria gracilis GNS1m maleexontig00000158_pilon 46750..46797 +
Ggra176.t1.exon2Ggra176.t1.exon2Gracilaria gracilis GNS1m maleexontig00000158_pilon 46880..47408 +
Ggra176.t1.exon3Ggra176.t1.exon3Gracilaria gracilis GNS1m maleexontig00000158_pilon 47505..47634 +
Ggra176.t1.exon4Ggra176.t1.exon4Gracilaria gracilis GNS1m maleexontig00000158_pilon 47730..47870 +
Ggra176.t1.exon5Ggra176.t1.exon5Gracilaria gracilis GNS1m maleexontig00000158_pilon 47945..48482 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1.intron1Ggra176.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000158_pilon 46798..46879 +
Ggra176.t1.intron2Ggra176.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000158_pilon 47409..47504 +
Ggra176.t1.intron3Ggra176.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000158_pilon 47635..47729 +
Ggra176.t1.intron4Ggra176.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000158_pilon 47871..47944 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1.stop1Ggra176.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000158_pilon 48480..48482 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra176.t1 ID=Ggra176.t1|Name=Ggra176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTT
DFTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPP
FVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILD
RRFAVPATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLS
DETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQS
AADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNPPNYFNSYTTL
FQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKG
SNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFF
FIAYSVGGTLFVAMALLPQTNSEENRFREASGNHESPEMVRKPPRRVSCS
STEVSHEDAEV*
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spliced messenger RNA

>Ggra176.t1 ID=Ggra176.t1|Name=Ggra176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000158_pilon:46750..48482+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAACCTCCCATCAGCTTTCAGAATGATCGCAACTACTGGAACAA
TGGCTTGGACGGAGTCATCAAAGAACATCTGCTTCAGCATCAAGCGTACC
TCAATTGGACGTGCTCATCGGTTCAGGTCTTCCGCGGGCCAAACACAACG
GACTTCACCGCTTTCGTCACCACCATGCATGAATGCACCAACAAATCAAC
CGGACAGATAATTGAATCCCCAGATTGCTTGTGTGATATTGGTATTGGAG
GTTGGTTTCAGACCGCCGGTCGCTTTGGGTTCGTTGATTTCTTGCCTCCA
TTTGTGTACGATCGATACGTTGTGTTTGCGCCCGTTTCTGAAGCAACAGT
GTCGGGGAACGTGTGGTTTTTCATACAGACTTTTGACGGCAAAGCTTGGA
TCTCGATTTTGTCTCTGTTCATTATGTTTTCGTTTCTTAAGATCCTTGAC
AGACGATTTGCTGTCCCTGCCACATTTGAGCCGCTACCGAAGACTAGCTC
CAGAATTCGACAATATGCACACTATCTTACGAAGAGCAACCTACCTTTCC
GACTAAGAAAGGGCATTCAAAGCACGGttatgagaatgataatgctctcc
gacgagactgtggttgataatggaaacaccacgcgccaatggtttgttaa
cttgattcttgctgtgacagccctattcctcgtgttgtcttatgaggcta
gcatgacAGCATCCCTTGTACAGGAAACAGTTGAGACCAAGTTTCAATCC
GCTGCAGATCTTTTGAATTGCGACGTTCATCCTTCTGAAGTATGTATGCT
CAGAGGAGGTGCTTTGGAGACGTATTGGAAGAATTCCATAGCCATTGAGG
AATGCCATGCACAGAACCCACCAAACTACTTCAACTCTTACACCACTCTC
tttcaagcggttgaaaacggccaatgcaagtattccatcgtgcttgaatc
cgccatcacatccgcaattcggaaaaggtattgCGGGGATTTCGTGATCG
CTGGTGAACCAATCTGGAACGGGGGCCTATCAATGCTGCTCCCAAAAGGC
AGTAACCTGACAGAAGCAATGAGCCGTGCAACGCTTGAGTTGCTCGGAAA
TCAGACGACGACCAGTCTCATAAGGTATTTCAATAATCTTCCTCAGTGCA
AAGTGGAAGTGAACACCACTCTCAGCTTCGAAAAGCTCCGGCATTTCTTC
TTCATCGCATATTCAGTGGGAGGCACCTTGTTTGTTGCGATGGCGCTTCT
TCCTCAAACGAATTCCGAGGAAAATAGATTCAGGGAAGCATCAGGGAACC
ATGAATCGCCGGAAATGGTGCGAAAACCACCAAGACGCGTAAGCTGCTCT
TCAACGGAAGTCAGTCACGAGGATGCCGAGGTCTAA
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protein sequence of Ggra176.t1

>Ggra176.t1 ID=Ggra176.t1|Name=Ggra176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTT
DFTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPP
FVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILD
RRFAVPATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLS
DETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQS
AADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNPPNYFNSYTTL
FQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKG
SNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFF
FIAYSVGGTLFVAMALLPQTNSEENRFREASGNHESPEMVRKPPRRVSCS
STEVSHEDAEV*
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mRNA from alignment at tig00000158_pilon:46750..48482+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra176.t1 ID=Ggra176.t1|Name=Ggra176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1733bp|location=Sequence derived from alignment at tig00000158_pilon:46750..48482+ (Gracilaria gracilis GNS1m male)
ATGGAGGAACCTCCCATCAGCTTTCAGAATGATCGCAACTACTGGAACGT
ACGTTATCCAGAATGCTTTTCAATCGAATGTTCTCAATATCCTAACACTG
CTCCTACGTATTACGGTGGCATCCCTTCAGAATGGCTTGGACGGAGTCAT
CAAAGAACATCTGCTTCAGCATCAAGCGTACCTCAATTGGACGTGCTCAT
CGGTTCAGGTCTTCCGCGGGCCAAACACAACGGACTTCACCGCTTTCGTC
ACCACCATGCATGAATGCACCAACAAATCAACCGGACAGATAATTGAATC
CCCAGATTGCTTGTGTGATATTGGTATTGGAGGTTGGTTTCAGACCGCCG
GTCGCTTTGGGTTCGTTGATTTCTTGCCTCCATTTGTGTACGATCGATAC
GTTGTGTTTGCGCCCGTTTCTGAAGCAACAGTGTCGGGGAACGTGTGGTT
TTTCATACAGACTTTTGACGGCAAAGCTTGGATCTCGATTTTGTCTCTGT
TCATTATGTTTTCGTTTCTTAAGATCCTTGACAGACGATTTGCTGTCCCT
GCCACATTTGAGCCGCTACCGAAGACTAGCTCCAGAATTCGACAATATGC
ACACTATCTTACGAAGAGCAACCTACCTTTCCGACTAAGAAAGGGCATTC
AAAGCACGGGTAAGTTTCACACTACTGAACTTTCGGTTTTGAGTAAGGGA
TCGTGCAAAAGACTCACATCTTAATTTCCGCAATCTTAATCTGATACGCC
TGAagttatgagaatgataatgctctccgacgagactgtggttgataatg
gaaacaccacgcgccaatggtttgttaacttgattcttgctgtgacagcc
ctattcctcgtgttgtcttatgaggctagcatgacgtaagttTCTTGGCT
TGATGATTCTTCTAGTATTCACACTTGCGTGAATTCACGCTTCTCACATC
GTTCTCTCTACAATTTGTTCACTACTGCAGAGCATCCCTTGTACAGGAAA
CAGTTGAGACCAAGTTTCAATCCGCTGCAGATCTTTTGAATTGCGACGTT
CATCCTTCTGAAGTATGTATGCTCAGAGGAGGTGCTTTGGAGACGTATTG
GAAGAATTCCATAGCCATTGAGTGAGTTCTATCATTCTTGTTGTTTCGTA
GCGGTAATAGCCTTCTGACCTGGGAGTTTTGTGTTTTTACCGCAGGGAAT
GCCATGCACAGAACCCACCAAACTACTTCAACTCTTACACCACTCTCttt
caagcggttgaaaacggccaatgcaagtattccatcgtgcttgaatccgc
catcacatccgcaattcggaaaaggtattgCGGGGATTTCGTGATCGCTG
GTGAACCAATCTGGAACGGGGGCCTATCAATGCTGCTCCCAAAAGGCAGT
AACCTGACAGAAGCAATGAGCCGTGCAACGCTTGAGTTGCTCGGAAATCA
GACGACGACCAGTCTCATAAGGTATTTCAATAATCTTCCTCAGTGCAAAG
TGGAAGTGAACACCACTCTCAGCTTCGAAAAGCTCCGGCATTTCTTCTTC
ATCGCATATTCAGTGGGAGGCACCTTGTTTGTTGCGATGGCGCTTCTTCC
TCAAACGAATTCCGAGGAAAATAGATTCAGGGAAGCATCAGGGAACCATG
AATCGCCGGAAATGGTGCGAAAACCACCAAGACGCGTAAGCTGCTCTTCA
ACGGAAGTCAGTCACGAGGATGCCGAGGTCTAA
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Coding sequence (CDS) from alignment at tig00000158_pilon:46750..48482+

>Ggra176.t1 ID=Ggra176.t1|Name=Ggra176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000158_pilon:46750..48482+ (Gracilaria gracilis GNS1m male)
ATGGAGGAACCTCCCATCAGCTTTCAGAATGATCGCAACTACTGGAACAA
TGGCTTGGACGGAGTCATCAAAGAACATCTGCTTCAGCATCAAGCGTACC
TCAATTGGACGTGCTCATCGGTTCAGGTCTTCCGCGGGCCAAACACAACG
GACTTCACCGCTTTCGTCACCACCATGCATGAATGCACCAACAAATCAAC
CGGACAGATAATTGAATCCCCAGATTGCTTGTGTGATATTGGTATTGGAG
GTTGGTTTCAGACCGCCGGTCGCTTTGGGTTCGTTGATTTCTTGCCTCCA
TTTGTGTACGATCGATACGTTGTGTTTGCGCCCGTTTCTGAAGCAACAGT
GTCGGGGAACGTGTGGTTTTTCATACAGACTTTTGACGGCAAAGCTTGGA
TCTCGATTTTGTCTCTGTTCATTATGTTTTCGTTTCTTAAGATCCTTGAC
AGACGATTTGCTGTCCCTGCCACATTTGAGCCGCTACCGAAGACTAGCTC
CAGAATTCGACAATATGCACACTATCTTACGAAGAGCAACCTACCTTTCC
GACTAAGAAAGGGCATTCAAAGCACGGttatgagaatgataatgctctcc
gacgagactgtggttgataatggaaacaccacgcgccaatggtttgttaa
cttgattcttgctgtgacagccctattcctcgtgttgtcttatgaggcta
gcatgacAGCATCCCTTGTACAGGAAACAGTTGAGACCAAGTTTCAATCC
GCTGCAGATCTTTTGAATTGCGACGTTCATCCTTCTGAAGTATGTATGCT
CAGAGGAGGTGCTTTGGAGACGTATTGGAAGAATTCCATAGCCATTGAGG
AATGCCATGCACAGAACCCACCAAACTACTTCAACTCTTACACCACTCTC
tttcaagcggttgaaaacggccaatgcaagtattccatcgtgcttgaatc
cgccatcacatccgcaattcggaaaaggtattgCGGGGATTTCGTGATCG
CTGGTGAACCAATCTGGAACGGGGGCCTATCAATGCTGCTCCCAAAAGGC
AGTAACCTGACAGAAGCAATGAGCCGTGCAACGCTTGAGTTGCTCGGAAA
TCAGACGACGACCAGTCTCATAAGGTATTTCAATAATCTTCCTCAGTGCA
AAGTGGAAGTGAACACCACTCTCAGCTTCGAAAAGCTCCGGCATTTCTTC
TTCATCGCATATTCAGTGGGAGGCACCTTGTTTGTTGCGATGGCGCTTCT
TCCTCAAACGAATTCCGAGGAAAATAGATTCAGGGAAGCATCAGGGAACC
ATGAATCGCCGGAAATGGTGCGAAAACCACCAAGACGCGTAAGCTGCTCT
TCAACGGAAGTCAGTCACGAGGATGCCGAGGTCTAA
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