Ggra1745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1745.t1
Unique NameGgra1745.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:529723..530526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704587.1
PFAMsRibosomal_L27A
Max annot lvl2759|Eukaryota
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue2.96e-44
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1745Ggra1745Gracilaria gracilis GNS1m malegenetig00000050_pilon 529723..530526 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1745.t1.start1Ggra1745.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 529723..529725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1745.t1.CDS1Ggra1745.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 529723..530526 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1745.t1.exon1Ggra1745.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 529723..530526 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1745.t1.stop1Ggra1745.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 530524..530526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1745.t1Ggra1745.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 529723..530526 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MQLLRSSMTSGSSLIYVRGLRTAASRPVVKDLTKHMQGMALKLSNICDNP
GARKKEVRVGRGRGSGCGKTSGRGQKGQRARNSVALGFEGGQTPLQKRFP
KVRTYDPFAKDIQTVTLGRIQRFVDTGRLDPNAEIGLNQLVQSGCVRRIK
DGLRLIKGGPGTCSKLHIRVSECTPDAAEQVISKGGQICLAYYNKLGIRI
VVKPFKWTDQGLPLPRFAQPPPKSAHRYLDEDKDGVPIRILKEHQDIEQM
IKDWPRLIHRREAKAKH*
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spliced messenger RNA

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:529723..530526+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGCTTCGATCCTCAATGACCTCAGGGTCGTCACTGATCTACGT
TCGAGGACTCAGAACAGCCGCAAGCCGACCCGTAGTGAAGGATCTCACGA
AACATATGCAAGGAATGGCTCTCAAATTATCGAACATCTGCGACAACCCT
GGGGCTCGAAAGAAAGAAGTTCGCGTTGGCAGAGGTCGTGGATCCGGGTG
TGGTAAGACCTCAGGGCGTGGACAGAAAGGCCAAAGAGCTAGGAACTCCG
TAGCTCTTGGTTTTGAAGGAGGGCAAACCCCATTGCAGAAACGCTTCCCA
AAGGTGAGGACTTATGATCCTTTCGCGAAAGACATTCAAACAGTCACATT
GGGTAGAATTCAGCGATTTGTTGATACAGGTCGCTTAGATCCGAATGCTG
AAATCGGACTTAATCAGTTGGTTCAAAGTGGATGCGTAAGACGAATAAAG
GACGGCTTACGCCTCATTAAAGGTGGACCAGGAACTTGTTCAAAGTTACA
TATTCGGGTCAGTGAATGCACTCCGGATGCGGCAGAGCAGGTGATTAGCA
AAGGAGGGCAAATCTGTTTGGCATACTACAACAAGCTTGGAATCCGCATT
GTTGTGAAGCCATTTAAATGGACTGATCAGGGACTGCCTCTGCCTCGCTT
CGCACAACCTCCTCCTAAAAGCGCACACCGGTACCTGGATGAAGACAAAG
ATGGTGTTCCTATCAGGATTTTGAAAGAACACCAAGACATTGAACAAATG
ATAAAAGATTGGCCACGACTGATACACAGGAGAGAAGCGAAGGCGAAGCA
TTGA
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protein sequence of Ggra1745.t1

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MQLLRSSMTSGSSLIYVRGLRTAASRPVVKDLTKHMQGMALKLSNICDNP
GARKKEVRVGRGRGSGCGKTSGRGQKGQRARNSVALGFEGGQTPLQKRFP
KVRTYDPFAKDIQTVTLGRIQRFVDTGRLDPNAEIGLNQLVQSGCVRRIK
DGLRLIKGGPGTCSKLHIRVSECTPDAAEQVISKGGQICLAYYNKLGIRI
VVKPFKWTDQGLPLPRFAQPPPKSAHRYLDEDKDGVPIRILKEHQDIEQM
IKDWPRLIHRREAKAKH*
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mRNA from alignment at tig00000050_pilon:529723..530526+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:529723..530526+ (Gracilaria gracilis GNS1m male)
ATGCAGCTGCTTCGATCCTCAATGACCTCAGGGTCGTCACTGATCTACGT
TCGAGGACTCAGAACAGCCGCAAGCCGACCCGTAGTGAAGGATCTCACGA
AACATATGCAAGGAATGGCTCTCAAATTATCGAACATCTGCGACAACCCT
GGGGCTCGAAAGAAAGAAGTTCGCGTTGGCAGAGGTCGTGGATCCGGGTG
TGGTAAGACCTCAGGGCGTGGACAGAAAGGCCAAAGAGCTAGGAACTCCG
TAGCTCTTGGTTTTGAAGGAGGGCAAACCCCATTGCAGAAACGCTTCCCA
AAGGTGAGGACTTATGATCCTTTCGCGAAAGACATTCAAACAGTCACATT
GGGTAGAATTCAGCGATTTGTTGATACAGGTCGCTTAGATCCGAATGCTG
AAATCGGACTTAATCAGTTGGTTCAAAGTGGATGCGTAAGACGAATAAAG
GACGGCTTACGCCTCATTAAAGGTGGACCAGGAACTTGTTCAAAGTTACA
TATTCGGGTCAGTGAATGCACTCCGGATGCGGCAGAGCAGGTGATTAGCA
AAGGAGGGCAAATCTGTTTGGCATACTACAACAAGCTTGGAATCCGCATT
GTTGTGAAGCCATTTAAATGGACTGATCAGGGACTGCCTCTGCCTCGCTT
CGCACAACCTCCTCCTAAAAGCGCACACCGGTACCTGGATGAAGACAAAG
ATGGTGTTCCTATCAGGATTTTGAAAGAACACCAAGACATTGAACAAATG
ATAAAAGATTGGCCACGACTGATACACAGGAGAGAAGCGAAGGCGAAGCA
TTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:529723..530526+

>Ggra1745.t1 ID=Ggra1745.t1|Name=Ggra1745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:529723..530526+ (Gracilaria gracilis GNS1m male)
ATGCAGCTGCTTCGATCCTCAATGACCTCAGGGTCGTCACTGATCTACGT
TCGAGGACTCAGAACAGCCGCAAGCCGACCCGTAGTGAAGGATCTCACGA
AACATATGCAAGGAATGGCTCTCAAATTATCGAACATCTGCGACAACCCT
GGGGCTCGAAAGAAAGAAGTTCGCGTTGGCAGAGGTCGTGGATCCGGGTG
TGGTAAGACCTCAGGGCGTGGACAGAAAGGCCAAAGAGCTAGGAACTCCG
TAGCTCTTGGTTTTGAAGGAGGGCAAACCCCATTGCAGAAACGCTTCCCA
AAGGTGAGGACTTATGATCCTTTCGCGAAAGACATTCAAACAGTCACATT
GGGTAGAATTCAGCGATTTGTTGATACAGGTCGCTTAGATCCGAATGCTG
AAATCGGACTTAATCAGTTGGTTCAAAGTGGATGCGTAAGACGAATAAAG
GACGGCTTACGCCTCATTAAAGGTGGACCAGGAACTTGTTCAAAGTTACA
TATTCGGGTCAGTGAATGCACTCCGGATGCGGCAGAGCAGGTGATTAGCA
AAGGAGGGCAAATCTGTTTGGCATACTACAACAAGCTTGGAATCCGCATT
GTTGTGAAGCCATTTAAATGGACTGATCAGGGACTGCCTCTGCCTCGCTT
CGCACAACCTCCTCCTAAAAGCGCACACCGGTACCTGGATGAAGACAAAG
ATGGTGTTCCTATCAGGATTTTGAAAGAACACCAAGACATTGAACAAATG
ATAAAAGATTGGCCACGACTGATACACAGGAGAGAAGCGAAGGCGAAGCA
TTGA
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