Ggra1730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1730.t1
Unique NameGgra1730.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:489121..489735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008867423.1
PFAMsPTH2
Max annot lvl2759|Eukaryota
KEGG koko:K01128,ko:K04794
GOsGO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010605,GO:0016020,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019867,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032543,GO:0034641,GO:0034645,GO:0042176,GO:0042177,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0052689,GO:0060255,GO:0061136,GO:0065007,GO:0071704,GO:0080090,GO:0098588,GO:0098805,GO:0140053,GO:0140098,GO:0140101,GO:1901564,GO:1901566,GO:1901576,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
Evalue7.36e-37
EggNOG OGsCOG1990@1|root,KOG3282@2759|Eukaryota
EC3.1.1.29
Descriptionaminoacyl-tRNA hydrolase activity
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1730Ggra1730Gracilaria gracilis GNS1m malegenetig00000050_pilon 489121..489735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1730.t1Ggra1730.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 489121..489735 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1730.t1.start1Ggra1730.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 489121..489123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1730.t1.CDS1Ggra1730.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 489121..489567 +
Ggra1730.t1.CDS2Ggra1730.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 489655..489735 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1730.t1.exon1Ggra1730.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 489121..489567 +
Ggra1730.t1.exon2Ggra1730.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 489655..489735 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1730.t1.intron1Ggra1730.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 489568..489654 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1730.t1.stop1Ggra1730.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 489733..489735 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1730.t1 ID=Ggra1730.t1|Name=Ggra1730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MLPDLTPRDGTTGAIGLTAGFVLGFLTKHILHRRLKKLPDYDSDEEDDFV
PNSYARANEEHKLVLCVRVDLKMKKGKIAAQVGHATLGAYKAAARRTPTA
LAIWERNAQPKIAVQIRSHREADTLRNHASRLGLPTYMVLDAGRTQIAAG
SMTVLAVGPGPASLVDQVTGKLKLL*
back to top

spliced messenger RNA

>Ggra1730.t1 ID=Ggra1730.t1|Name=Ggra1730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000050_pilon:489121..489735+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCCGATCTCACGCCTCGGGACGGAACCACCGGTGCTATCGGGCT
TACGGCTGGCTTTGTGCTTGGTTTCCTCACCAAACACATTCTCCACCGAC
GTCTCAAGAAGCTGCCCGACTACGACAGTGATGAGGAAGATGACTTTGTT
CCCAATTCGTACGCGCGCGCCAACGAAGAGCACAAACTGGTGCTGTGCGT
TCGCGTCGATCTCAAGATGAAGAAGGGTAAGATCGCTGCACAGGTAGGCC
ATGCAACGTTGGGTGCTTATAAAGCGGCTGCCAGACGTACCCCCACCGCG
CTGGCAATCTGGGAGCGTAACGCGCAGCCTAAAATCGCCGTGCAGATCCG
CTCGCACAGAGAAGCTGACACCTTGCGGAATCATGCTTCCAGGCTTGGAC
TGCCTACCTATATGGTGCTCGATGCCGGAAGAACCCAGATCGCAGCAGGA
AGTATGACTGTCCTTGCAGTTGGCCCGGGTCCTGCCAGTTTGGTTGATCA
AGTCACTGGAAAGCTCAAGCTACTCTGA
back to top

protein sequence of Ggra1730.t1

>Ggra1730.t1 ID=Ggra1730.t1|Name=Ggra1730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MLPDLTPRDGTTGAIGLTAGFVLGFLTKHILHRRLKKLPDYDSDEEDDFV
PNSYARANEEHKLVLCVRVDLKMKKGKIAAQVGHATLGAYKAAARRTPTA
LAIWERNAQPKIAVQIRSHREADTLRNHASRLGLPTYMVLDAGRTQIAAG
SMTVLAVGPGPASLVDQVTGKLKLL*
back to top

mRNA from alignment at tig00000050_pilon:489121..489735+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1730.t1 ID=Ggra1730.t1|Name=Ggra1730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000050_pilon:489121..489735+ (Gracilaria gracilis GNS1m male)
ATGCTCCCCGATCTCACGCCTCGGGACGGAACCACCGGTGCTATCGGGCT
TACGGCTGGCTTTGTGCTTGGTTTCCTCACCAAACACATTCTCCACCGAC
GTCTCAAGAAGCTGCCCGACTACGACAGTGATGAGGAAGATGACTTTGTT
CCCAATTCGTACGCGCGCGCCAACGAAGAGCACAAACTGGTGCTGTGCGT
TCGCGTCGATCTCAAGATGAAGAAGGGTAAGATCGCTGCACAGGTAGGCC
ATGCAACGTTGGGTGCTTATAAAGCGGCTGCCAGACGTACCCCCACCGCG
CTGGCAATCTGGGAGCGTAACGCGCAGCCTAAAATCGCCGTGCAGATCCG
CTCGCACAGAGAAGCTGACACCTTGCGGAATCATGCTTCCAGGCTTGGAC
TGCCTACCTATATGGTGCTCGATGCCGGAAGAACCCAGATCGCAGCAGTA
AGTTTATTCATTCATCTTATGTTTATGCTTTTATATATGTAATACACGCG
TTTCTGACTAATGCCTTGTGGAAAATGTCTGTAGGGAAGTATGACTGTCC
TTGCAGTTGGCCCGGGTCCTGCCAGTTTGGTTGATCAAGTCACTGGAAAG
CTCAAGCTACTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:489121..489735+

>Ggra1730.t1 ID=Ggra1730.t1|Name=Ggra1730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000050_pilon:489121..489735+ (Gracilaria gracilis GNS1m male)
ATGCTCCCCGATCTCACGCCTCGGGACGGAACCACCGGTGCTATCGGGCT
TACGGCTGGCTTTGTGCTTGGTTTCCTCACCAAACACATTCTCCACCGAC
GTCTCAAGAAGCTGCCCGACTACGACAGTGATGAGGAAGATGACTTTGTT
CCCAATTCGTACGCGCGCGCCAACGAAGAGCACAAACTGGTGCTGTGCGT
TCGCGTCGATCTCAAGATGAAGAAGGGTAAGATCGCTGCACAGGTAGGCC
ATGCAACGTTGGGTGCTTATAAAGCGGCTGCCAGACGTACCCCCACCGCG
CTGGCAATCTGGGAGCGTAACGCGCAGCCTAAAATCGCCGTGCAGATCCG
CTCGCACAGAGAAGCTGACACCTTGCGGAATCATGCTTCCAGGCTTGGAC
TGCCTACCTATATGGTGCTCGATGCCGGAAGAACCCAGATCGCAGCAGGA
AGTATGACTGTCCTTGCAGTTGGCCCGGGTCCTGCCAGTTTGGTTGATCA
AGTCACTGGAAAGCTCAAGCTACTCTGA
back to top