Ggra1722.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1722.t1
Unique Name	Ggra1722.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:468805..469683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LHU1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20628
Evalue	1.01e-57
EggNOG OGs	2D16Q@1\|root,2SGXE@2759\|Eukaryota
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1722	Ggra1722	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 468805..469683 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1722.t1.start1	Ggra1722.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 468805..468807 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1722.t1.CDS1	Ggra1722.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 468805..469683 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1722.t1.exon1	Ggra1722.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 468805..469683 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1722.t1.stop1	Ggra1722.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 469681..469683 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1722.t1	Ggra1722.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 468805..469683 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:468805..469683+
coding sequence from alignment at tig00000050_pilon:468805..469683+

mRNA sequence

>Ggra1722.t1 ID=Ggra1722.t1|Name=Ggra1722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MVHSIVFIVSLFSLLSTTCLALGSGDYYRRFFGDGTYYGFTTQGNCAIRS
PLPAMYSGMMPIAINNAQYAGSASCGACLEVTGYGQGSGANPIVGTFKAY
VHDRCPECKYGDIDLSKSGDGRWKVSWKFIPCPAEWVFFLMEGSNRYYMK
MQPRGLQTPVQAMRIGSQWGTKTQDNFYIFQDGGGFRFPVQISMRTTMGK
WVNVQMTYMKPDGPVYPAGYRTGRSAPPASISAPQPPKPSGGGGGGKCVP
NWKPCTGPKNFWGTSNCCSKNYRCVVAGQRNFVGKRCEPNWL*

spliced messenger RNA

>Ggra1722.t1 ID=Ggra1722.t1|Name=Ggra1722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000050_pilon:468805..469683+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACACTCCATCGTCTTCATCGTATCTCTCTTCTCTCTGCTTAGCAC
AACATGCTTGGCGCTTGGTTCTGGAGACTATTACCGCCGATTTTTTGGTG
ATGGAACTTACTACGGCTTCACTACTCAGGGCAACTGCGCCATCAGATCA
CCCCTTCCTGCTATGTACAGTGGAATGATGCCGATCGCCATCAACAATGC
CCAGTACGCCGGCTCAGCGTCGTGTGGCGCCTGTCTCGAGGTAACCGGGT
ATGGGCAAGGTTCAGGAGCAAACCCCATCGTTGGTACCTTCAAGGCGTAT
GTTCATGACAGATGCCCTGAATGCAAGTACGGCGACATCGACCTGTCAAA
GAGTGGAGATGGACGATGGAAGGTGTCCTGGAAATTCATTCCGTGTCCTG
CAGAATGGGTTTTCTTCCTCATGGAGGGTAGCAATCGTTACTACATGAAG
ATGCAACCACGTGGCCTTCAGACTCCAGTACAAGCCATGCGCATTGGCAG
TCAATGGGGGACAAAGACGCAGGATAACTTCTACATCTTTCAGGATGGAG
GAGGTTTCCGATTCCCGGTCCAGATTAGCATGAGAACAACTATGGGAAAA
TGGGTTAACGTCCAGATGACCTATATGAAGCCTGACGGTCCGGTCTACCC
TGCAGGCTATCGGACTGGCCGGAGCGCGCCCCCAGCATCGATCTCTGCTC
CACAGCCCCCCAAACCGTCAGGAGGCGGTGGCGGTGGCAAGTGCGTGCCG
AACTGGAAGCCATGCACAGGACCGAAGAATTTCTGGGGTACTTCCAACTG
CTGCAGTAAGAACTATCGCTGCGTTGTGGCCGGTCAACGAAACTTTGTTG
GCAAGCGATGCGAACCGAACTGGTTGTAG

protein sequence of Ggra1722.t1

>Ggra1722.t1 ID=Ggra1722.t1|Name=Ggra1722.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MVHSIVFIVSLFSLLSTTCLALGSGDYYRRFFGDGTYYGFTTQGNCAIRS
PLPAMYSGMMPIAINNAQYAGSASCGACLEVTGYGQGSGANPIVGTFKAY
VHDRCPECKYGDIDLSKSGDGRWKVSWKFIPCPAEWVFFLMEGSNRYYMK
MQPRGLQTPVQAMRIGSQWGTKTQDNFYIFQDGGGFRFPVQISMRTTMGK
WVNVQMTYMKPDGPVYPAGYRTGRSAPPASISAPQPPKPSGGGGGGKCVP
NWKPCTGPKNFWGTSNCCSKNYRCVVAGQRNFVGKRCEPNWL*

mRNA from alignment at tig00000050_pilon:468805..469683+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1722.t1 ID=Ggra1722.t1|Name=Ggra1722.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000050_pilon:468805..469683+ (Gracilaria gracilis GNS1m male)
ATGGTACACTCCATCGTCTTCATCGTATCTCTCTTCTCTCTGCTTAGCAC
AACATGCTTGGCGCTTGGTTCTGGAGACTATTACCGCCGATTTTTTGGTG
ATGGAACTTACTACGGCTTCACTACTCAGGGCAACTGCGCCATCAGATCA
CCCCTTCCTGCTATGTACAGTGGAATGATGCCGATCGCCATCAACAATGC
CCAGTACGCCGGCTCAGCGTCGTGTGGCGCCTGTCTCGAGGTAACCGGGT
ATGGGCAAGGTTCAGGAGCAAACCCCATCGTTGGTACCTTCAAGGCGTAT
GTTCATGACAGATGCCCTGAATGCAAGTACGGCGACATCGACCTGTCAAA
GAGTGGAGATGGACGATGGAAGGTGTCCTGGAAATTCATTCCGTGTCCTG
CAGAATGGGTTTTCTTCCTCATGGAGGGTAGCAATCGTTACTACATGAAG
ATGCAACCACGTGGCCTTCAGACTCCAGTACAAGCCATGCGCATTGGCAG
TCAATGGGGGACAAAGACGCAGGATAACTTCTACATCTTTCAGGATGGAG
GAGGTTTCCGATTCCCGGTCCAGATTAGCATGAGAACAACTATGGGAAAA
TGGGTTAACGTCCAGATGACCTATATGAAGCCTGACGGTCCGGTCTACCC
TGCAGGCTATCGGACTGGCCGGAGCGCGCCCCCAGCATCGATCTCTGCTC
CACAGCCCCCCAAACCGTCAGGAGGCGGTGGCGGTGGCAAGTGCGTGCCG
AACTGGAAGCCATGCACAGGACCGAAGAATTTCTGGGGTACTTCCAACTG
CTGCAGTAAGAACTATCGCTGCGTTGTGGCCGGTCAACGAAACTTTGTTG
GCAAGCGATGCGAACCGAACTGGTTGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:468805..469683+

>Ggra1722.t1 ID=Ggra1722.t1|Name=Ggra1722.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000050_pilon:468805..469683+ (Gracilaria gracilis GNS1m male)
ATGGTACACTCCATCGTCTTCATCGTATCTCTCTTCTCTCTGCTTAGCAC
AACATGCTTGGCGCTTGGTTCTGGAGACTATTACCGCCGATTTTTTGGTG
ATGGAACTTACTACGGCTTCACTACTCAGGGCAACTGCGCCATCAGATCA
CCCCTTCCTGCTATGTACAGTGGAATGATGCCGATCGCCATCAACAATGC
CCAGTACGCCGGCTCAGCGTCGTGTGGCGCCTGTCTCGAGGTAACCGGGT
ATGGGCAAGGTTCAGGAGCAAACCCCATCGTTGGTACCTTCAAGGCGTAT
GTTCATGACAGATGCCCTGAATGCAAGTACGGCGACATCGACCTGTCAAA
GAGTGGAGATGGACGATGGAAGGTGTCCTGGAAATTCATTCCGTGTCCTG
CAGAATGGGTTTTCTTCCTCATGGAGGGTAGCAATCGTTACTACATGAAG
ATGCAACCACGTGGCCTTCAGACTCCAGTACAAGCCATGCGCATTGGCAG
TCAATGGGGGACAAAGACGCAGGATAACTTCTACATCTTTCAGGATGGAG
GAGGTTTCCGATTCCCGGTCCAGATTAGCATGAGAACAACTATGGGAAAA
TGGGTTAACGTCCAGATGACCTATATGAAGCCTGACGGTCCGGTCTACCC
TGCAGGCTATCGGACTGGCCGGAGCGCGCCCCCAGCATCGATCTCTGCTC
CACAGCCCCCCAAACCGTCAGGAGGCGGTGGCGGTGGCAAGTGCGTGCCG
AACTGGAAGCCATGCACAGGACCGAAGAATTTCTGGGGTACTTCCAACTG
CTGCAGTAAGAACTATCGCTGCGTTGTGGCCGGTCAACGAAACTTTGTTG
GCAAGCGATGCGAACCGAACTGGTTGTAG