Ggra1676.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1676.t1
Unique Name	Ggra1676.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	586

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:321179..322936 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	59538.XP_005959891.1
Preferred name	KLF15
PFAMs	zf-C2H2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09210
GOs	GO:0000981,GO:0000982,GO:0001067,GO:0001077,GO:0001228,GO:0001655,GO:0001700,GO:0001822,GO:0003008,GO:0003012,GO:0003299,GO:0003300,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0007043,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010001,GO:0010035,GO:0010038,GO:0010272,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010827,GO:0010828,GO:0014887,GO:0014888,GO:0014896,GO:0014897,GO:0014898,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022008,GO:0022607,GO:0030154,GO:0030855,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032835,GO:0032879,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0034641,GO:0034645,GO:0034654,GO:0034762,GO:0034764,GO:0035850,GO:0036058,GO:0036059,GO:0042063,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043500,GO:0043565,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045216,GO:0045893,GO:0045935,GO:0045944,GO:0046324,GO:0046326,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0060255,GO:0060429,GO:0061005,GO:0061318,GO:0061319,GO:0061320,GO:0061321,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072010,GO:0072073,GO:0072112,GO:0072311,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1900076,GO:1900078,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901983,GO:1901984,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000756,GO:2000757,GO:2001141,GO:2001273,GO:2001275
Evalue	1.39e-09
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,38BGQ@33154\|Opisthokonta,3BHHA@33208\|Metazoa,3D3N2@33213\|Bilateria,48B5I@7711\|Chordata,4942H@7742\|Vertebrata,3J68Y@40674\|Mammalia,4IWRX@91561\|Cetartiodactyla
Description	factor 15
COG category	K
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1676	Ggra1676	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 321179..322936 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1676.t1.stop1	Ggra1676.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 321179..321181 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1676.t1.CDS1	Ggra1676.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 321179..322936 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1676.t1.exon1	Ggra1676.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 321179..322936 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1676.t1.start1	Ggra1676.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 322934..322936 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1676.t1	Ggra1676.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 321179..322936 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:321179..322936-
coding sequence from alignment at tig00000050_pilon:321179..322936-

mRNA sequence

>Ggra1676.t1 ID=Ggra1676.t1|Name=Ggra1676.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=586bp
MSSTSQPQGPPISAAVVKVHRCTFEGCEKTFSRKSNLKAHMRLHTGEEPY
ACPDCGKKFKWKSCMASHERVHSRRTDHPLTASAYARRAELQHASPARRR
NQHSAAPVPNLPTDAFVAQLQFQQANQWQHAQRQPQPPPTDHIFPPALRH
QRTQHHLQEQQRISQQERLQYYEREQRLMQLQQQFHLTDNQRITQPSAPH
HNLHHDFDPNSDARQGYPPPAQQYLQQQQPHLPPEQSPNAPNPPHHPYNS
TFQHEQPTYPPSNAQKHRELSYPPPQGYAADPITYPQPTYSQPLSEHPNS
AIPSHEYADLVLQAKKVSLLDYFNTSATDNEIASGRHLSTEMTPIEESPP
KSGSDAAQFQLAQDRAHEDQGEDPKPDNIRYCQDAPLKQAHTTDPQQLDA
PSSNAANDVLCSSDITPTDPANSNGSLDFNLCRPPKYHNEEMEMIPYFSK
EFGTRSASDRPMSIESKIFGDTSPDVGLSYFSREPSAPLDRLSGELKYNG
NGKWSCNMSDILNVGVEPGRSGSLGHLSLMLPELGNGLRGTYSNSVSPLG
MTLTNPSASPRTSVAYIRRGFISPHVSQSFSIADK*

spliced messenger RNA

>Ggra1676.t1 ID=Ggra1676.t1|Name=Ggra1676.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1758bp|location=Sequence derived from alignment at tig00000050_pilon:321179..322936- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCACTTCGCAACCGCAGGGGCCGCCCATCTCCGCCGCCGTCGT
CAAAGTGCACCGTTGCACCTTCGAGGGCTGCGAGAAGACCTTCTCCCGCA
AGTCCAACCTCAAGGCTCACATGCGCCTGCACACCGGTGAGGAGCCGTAC
GCATGCCCCGACTGCGGCAAAAAGTTCAAGTGGAAGAGCTGCATGGCGTC
GCACGAGCGCGTTCACAGCCGTCGCACCGACCATCCGCTCACCGCCTCCG
CCTACGCGCGCCGTGCCGAGCTGCAACACGCCTCTCCGGCACGTCGCCGA
AACCAACACTCGGCCGCCCCCGTGCCCAATCTCCCCACGGACGCCTTCGT
TGCGCAGCTGCAGTTTCAACAGGCCAATCAATGGCAACACGCGCAGCGCC
AACCGCAACCGCCGCCAACCGACCACATCTTTCCTCCGGCCTTGCGTCAT
CAACGAACCCAGCACCATCTTCAAGAGCAGCAGCGCATTAGCCAACAGGA
ACGACTCCAATACTACGAGCGTGAGCAGCGCCTCATGCAGCTGCAACAGC
AATTCCATCTAACAGACAATCAGCGCATCACACAACCTTCTGCGCCCCAC
CATAATCTACACCACGACTTTGATCCCAATTCTGACGCCCGCCAAGGCTA
CCCGCCACCAGCGCAACAGTATTTACAACAACAGCAGCCCCACCTACCAC
CCGAGCAATCTCCCAATGCACCGAATCCGCCGCATCACCCCTACAACTCA
ACCTTTCAACACGAGCAGCCGACCTACCCGCCATCGAACGCTCAGAAGCA
CCGAGAGCTTTCTTATCCACCACCTCAAGGTTACGCCGCCGATCCTATCA
CTTACCCGCAACCAACATATTCGCAGCCGCTTTCTGAACATCCTAACTCC
GCTATACCCTCTCATGAATACGCCGATCTGGTTCTCCAAGCCAAAAAAGT
CTCCCTTCTAGACTACTTCAACACCAGTGCTACTGATAATGAAATCGCCT
CAGGTCGTCATCTGTCCACCGAAATGACTCCAATTGAGGAGTCTCCTCCA
AAATCTGGTTCTGACGCTGCGCAATTTCAACTCGCTCAAGATCGTGCCCA
CGAAGACCAAGGTGAGGACCCCAAACCGGACAATATTCGCTATTGTCAAG
ATGCGCCGTTGAAGCAAGCACACACTACTGATCCACAGCAGCTCGATGCT
CCATCGAGTAACGCCGCAAATGATGTTCTTTGTTCGTCAGATATTACCCC
GACAGATCCGGCAAATTCAAATGGTTCGTTGGATTTCAACCTCTGCCGCC
CTCCAAAGTACCACAATGAGGAGATGGAGATGATACCTTATTTCAGCAAA
GAATTTGGCACTCGCTCGGCAAGCGATCGCCCCATGTCAATAGAATCCAA
GATTTTTGGAGACACATCGCCAGATGTTGGTCTATCATATTTCAGTCGCG
AACCGTCAGCGCCACTTGACCGGTTGTCAGGAGAACTTAAGTACAACGGG
AACGGAAAATGGTCTTGCAATATGAGCGACATCCTCAATGTGGGAGTGGA
ACCGGGTCGTTCTGGATCCCTCGGACATCTCTCATTGATGTTGCCGGAGC
TCGGCAACGGGTTACGCGGGACCTATAGTAACAGTGTTTCACCTCTTGGT
ATGACGTTGACTAATCCATCGGCTTCTCCTCGTACATCAGTTGCATATAT
ACGTCGTGGGTTTATTTCCCCGCATGTCTCACAATCCTTCTCGATTGCTG
ATAAATGA

protein sequence of Ggra1676.t1

>Ggra1676.t1 ID=Ggra1676.t1|Name=Ggra1676.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=586bp
MSSTSQPQGPPISAAVVKVHRCTFEGCEKTFSRKSNLKAHMRLHTGEEPY
ACPDCGKKFKWKSCMASHERVHSRRTDHPLTASAYARRAELQHASPARRR
NQHSAAPVPNLPTDAFVAQLQFQQANQWQHAQRQPQPPPTDHIFPPALRH
QRTQHHLQEQQRISQQERLQYYEREQRLMQLQQQFHLTDNQRITQPSAPH
HNLHHDFDPNSDARQGYPPPAQQYLQQQQPHLPPEQSPNAPNPPHHPYNS
TFQHEQPTYPPSNAQKHRELSYPPPQGYAADPITYPQPTYSQPLSEHPNS
AIPSHEYADLVLQAKKVSLLDYFNTSATDNEIASGRHLSTEMTPIEESPP
KSGSDAAQFQLAQDRAHEDQGEDPKPDNIRYCQDAPLKQAHTTDPQQLDA
PSSNAANDVLCSSDITPTDPANSNGSLDFNLCRPPKYHNEEMEMIPYFSK
EFGTRSASDRPMSIESKIFGDTSPDVGLSYFSREPSAPLDRLSGELKYNG
NGKWSCNMSDILNVGVEPGRSGSLGHLSLMLPELGNGLRGTYSNSVSPLG
MTLTNPSASPRTSVAYIRRGFISPHVSQSFSIADK*

mRNA from alignment at tig00000050_pilon:321179..322936-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1676.t1 ID=Ggra1676.t1|Name=Ggra1676.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1758bp|location=Sequence derived from alignment at tig00000050_pilon:321179..322936- (Gracilaria gracilis GNS1m male)
ATGTCTTCCACTTCGCAACCGCAGGGGCCGCCCATCTCCGCCGCCGTCGT
CAAAGTGCACCGTTGCACCTTCGAGGGCTGCGAGAAGACCTTCTCCCGCA
AGTCCAACCTCAAGGCTCACATGCGCCTGCACACCGGTGAGGAGCCGTAC
GCATGCCCCGACTGCGGCAAAAAGTTCAAGTGGAAGAGCTGCATGGCGTC
GCACGAGCGCGTTCACAGCCGTCGCACCGACCATCCGCTCACCGCCTCCG
CCTACGCGCGCCGTGCCGAGCTGCAACACGCCTCTCCGGCACGTCGCCGA
AACCAACACTCGGCCGCCCCCGTGCCCAATCTCCCCACGGACGCCTTCGT
TGCGCAGCTGCAGTTTCAACAGGCCAATCAATGGCAACACGCGCAGCGCC
AACCGCAACCGCCGCCAACCGACCACATCTTTCCTCCGGCCTTGCGTCAT
CAACGAACCCAGCACCATCTTCAAGAGCAGCAGCGCATTAGCCAACAGGA
ACGACTCCAATACTACGAGCGTGAGCAGCGCCTCATGCAGCTGCAACAGC
AATTCCATCTAACAGACAATCAGCGCATCACACAACCTTCTGCGCCCCAC
CATAATCTACACCACGACTTTGATCCCAATTCTGACGCCCGCCAAGGCTA
CCCGCCACCAGCGCAACAGTATTTACAACAACAGCAGCCCCACCTACCAC
CCGAGCAATCTCCCAATGCACCGAATCCGCCGCATCACCCCTACAACTCA
ACCTTTCAACACGAGCAGCCGACCTACCCGCCATCGAACGCTCAGAAGCA
CCGAGAGCTTTCTTATCCACCACCTCAAGGTTACGCCGCCGATCCTATCA
CTTACCCGCAACCAACATATTCGCAGCCGCTTTCTGAACATCCTAACTCC
GCTATACCCTCTCATGAATACGCCGATCTGGTTCTCCAAGCCAAAAAAGT
CTCCCTTCTAGACTACTTCAACACCAGTGCTACTGATAATGAAATCGCCT
CAGGTCGTCATCTGTCCACCGAAATGACTCCAATTGAGGAGTCTCCTCCA
AAATCTGGTTCTGACGCTGCGCAATTTCAACTCGCTCAAGATCGTGCCCA
CGAAGACCAAGGTGAGGACCCCAAACCGGACAATATTCGCTATTGTCAAG
ATGCGCCGTTGAAGCAAGCACACACTACTGATCCACAGCAGCTCGATGCT
CCATCGAGTAACGCCGCAAATGATGTTCTTTGTTCGTCAGATATTACCCC
GACAGATCCGGCAAATTCAAATGGTTCGTTGGATTTCAACCTCTGCCGCC
CTCCAAAGTACCACAATGAGGAGATGGAGATGATACCTTATTTCAGCAAA
GAATTTGGCACTCGCTCGGCAAGCGATCGCCCCATGTCAATAGAATCCAA
GATTTTTGGAGACACATCGCCAGATGTTGGTCTATCATATTTCAGTCGCG
AACCGTCAGCGCCACTTGACCGGTTGTCAGGAGAACTTAAGTACAACGGG
AACGGAAAATGGTCTTGCAATATGAGCGACATCCTCAATGTGGGAGTGGA
ACCGGGTCGTTCTGGATCCCTCGGACATCTCTCATTGATGTTGCCGGAGC
TCGGCAACGGGTTACGCGGGACCTATAGTAACAGTGTTTCACCTCTTGGT
ATGACGTTGACTAATCCATCGGCTTCTCCTCGTACATCAGTTGCATATAT
ACGTCGTGGGTTTATTTCCCCGCATGTCTCACAATCCTTCTCGATTGCTG
ATAAATGA

Coding sequence (CDS) from alignment at tig00000050_pilon:321179..322936-

>Ggra1676.t1 ID=Ggra1676.t1|Name=Ggra1676.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1758bp|location=Sequence derived from alignment at tig00000050_pilon:321179..322936- (Gracilaria gracilis GNS1m male)
ATGTCTTCCACTTCGCAACCGCAGGGGCCGCCCATCTCCGCCGCCGTCGT
CAAAGTGCACCGTTGCACCTTCGAGGGCTGCGAGAAGACCTTCTCCCGCA
AGTCCAACCTCAAGGCTCACATGCGCCTGCACACCGGTGAGGAGCCGTAC
GCATGCCCCGACTGCGGCAAAAAGTTCAAGTGGAAGAGCTGCATGGCGTC
GCACGAGCGCGTTCACAGCCGTCGCACCGACCATCCGCTCACCGCCTCCG
CCTACGCGCGCCGTGCCGAGCTGCAACACGCCTCTCCGGCACGTCGCCGA
AACCAACACTCGGCCGCCCCCGTGCCCAATCTCCCCACGGACGCCTTCGT
TGCGCAGCTGCAGTTTCAACAGGCCAATCAATGGCAACACGCGCAGCGCC
AACCGCAACCGCCGCCAACCGACCACATCTTTCCTCCGGCCTTGCGTCAT
CAACGAACCCAGCACCATCTTCAAGAGCAGCAGCGCATTAGCCAACAGGA
ACGACTCCAATACTACGAGCGTGAGCAGCGCCTCATGCAGCTGCAACAGC
AATTCCATCTAACAGACAATCAGCGCATCACACAACCTTCTGCGCCCCAC
CATAATCTACACCACGACTTTGATCCCAATTCTGACGCCCGCCAAGGCTA
CCCGCCACCAGCGCAACAGTATTTACAACAACAGCAGCCCCACCTACCAC
CCGAGCAATCTCCCAATGCACCGAATCCGCCGCATCACCCCTACAACTCA
ACCTTTCAACACGAGCAGCCGACCTACCCGCCATCGAACGCTCAGAAGCA
CCGAGAGCTTTCTTATCCACCACCTCAAGGTTACGCCGCCGATCCTATCA
CTTACCCGCAACCAACATATTCGCAGCCGCTTTCTGAACATCCTAACTCC
GCTATACCCTCTCATGAATACGCCGATCTGGTTCTCCAAGCCAAAAAAGT
CTCCCTTCTAGACTACTTCAACACCAGTGCTACTGATAATGAAATCGCCT
CAGGTCGTCATCTGTCCACCGAAATGACTCCAATTGAGGAGTCTCCTCCA
AAATCTGGTTCTGACGCTGCGCAATTTCAACTCGCTCAAGATCGTGCCCA
CGAAGACCAAGGTGAGGACCCCAAACCGGACAATATTCGCTATTGTCAAG
ATGCGCCGTTGAAGCAAGCACACACTACTGATCCACAGCAGCTCGATGCT
CCATCGAGTAACGCCGCAAATGATGTTCTTTGTTCGTCAGATATTACCCC
GACAGATCCGGCAAATTCAAATGGTTCGTTGGATTTCAACCTCTGCCGCC
CTCCAAAGTACCACAATGAGGAGATGGAGATGATACCTTATTTCAGCAAA
GAATTTGGCACTCGCTCGGCAAGCGATCGCCCCATGTCAATAGAATCCAA
GATTTTTGGAGACACATCGCCAGATGTTGGTCTATCATATTTCAGTCGCG
AACCGTCAGCGCCACTTGACCGGTTGTCAGGAGAACTTAAGTACAACGGG
AACGGAAAATGGTCTTGCAATATGAGCGACATCCTCAATGTGGGAGTGGA
ACCGGGTCGTTCTGGATCCCTCGGACATCTCTCATTGATGTTGCCGGAGC
TCGGCAACGGGTTACGCGGGACCTATAGTAACAGTGTTTCACCTCTTGGT
ATGACGTTGACTAATCCATCGGCTTCTCCTCGTACATCAGTTGCATATAT
ACGTCGTGGGTTTATTTCCCCGCATGTCTCACAATCCTTCTCGATTGCTG
ATAAATGA