Ggra167.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra167.t1
Unique NameGgra167.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000940_piloncontigtig00000940_pilon:118112..118756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR248CT
Preferred namePET127
PFAMsPet127
Max annot lvl2759|Eukaryota
GOsGO:0000957,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000966,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006139,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010608,GO:0016070,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031975,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0140053,GO:1901360,GO:1901361,GO:1901575,GO:1903311
Evalue4.18e-26
EggNOG OGs2CMAW@1|root,2QPU6@2759|Eukaryota
Descriptionmitochondrial RNA 5'-end processing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra167Ggra167Gracilaria gracilis GNS1m malegenetig00000940_pilon 118112..118756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra167.t1Ggra167.t1Gracilaria gracilis GNS1m malepolypeptidetig00000940_pilon 118112..118756 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra167.t1.start1Ggra167.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000940_pilon 118112..118114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra167.t1.CDS1Ggra167.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000940_pilon 118112..118215 +
Ggra167.t1.CDS2Ggra167.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000940_pilon 118312..118756 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra167.t1.exon1Ggra167.t1.exon1Gracilaria gracilis GNS1m maleexontig00000940_pilon 118112..118215 +
Ggra167.t1.exon2Ggra167.t1.exon2Gracilaria gracilis GNS1m maleexontig00000940_pilon 118312..118756 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra167.t1.intron1Ggra167.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000940_pilon 118216..118311 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra167.t1.stop1Ggra167.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000940_pilon 118754..118756 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra167.t1 ID=Ggra167.t1|Name=Ggra167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=183bp
MNPSADEQQFYHYSQASQFVLRAQIDCRNPGTGEVTDSYEREFYDMVRTV
FLKYALQLRIGRMSGGLVAYHNTTELLALEYFSLKEIESYVFGTQRWADV
AFGTAISLLERILDTITTTVPLDNTDDRLKVMLYTEWSKLRMYVFVQHLQ
RDEQDSFGDAEFQRRERDACLYSSRILYSCAL*
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spliced messenger RNA

>Ggra167.t1 ID=Ggra167.t1|Name=Ggra167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000940_pilon:118112..118756+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atGAATCCATCCGCCGATGAGCAACAGTTTTATCACTACTCTCAGGCTTC
CCAGTTTGTGCTTCGAGCCCAGATTGATTGTCGCAATCCCGGCACTGGCG
AGGTGACCGACTCGTACGAGCGTGAGTTCTACGATATGGTTCGCACAGTC
TTCCTCAAGTACGCGCTTCAACTCCGCATTGGACGCATGTCGGGCGGGCT
TGTCGCCTATCACAACACCACCGAGTTGCTCGCCTTGGAATACTTCTCGC
TCAAGGAGATTGAATCGTACGTGTTTGGTACTCAACGGTGGGCTGATGTC
GCATTTGGTACTGCCATTAGTCTCCTGGAACGCATTCTGGATACCATCAC
CACCACTGTGCCTCTGGACAACACTGACGACCGGTTGAAGGTCATGTTGT
ACACAGAATGGTCCAAATTGAGAATGTACGTGTTCGTGCAGCACTTGCAG
AGGGATGAACAAGATTCTTTCGGGGATGCCGAATTTCAGCGCCGAGAACG
CGATGCGTGCCTGTACAGCAGCAGGATTCTCTACTCGTGCGCATTGTAA
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protein sequence of Ggra167.t1

>Ggra167.t1 ID=Ggra167.t1|Name=Ggra167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=183bp
MNPSADEQQFYHYSQASQFVLRAQIDCRNPGTGEVTDSYEREFYDMVRTV
FLKYALQLRIGRMSGGLVAYHNTTELLALEYFSLKEIESYVFGTQRWADV
AFGTAISLLERILDTITTTVPLDNTDDRLKVMLYTEWSKLRMYVFVQHLQ
RDEQDSFGDAEFQRRERDACLYSSRILYSCAL*
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mRNA from alignment at tig00000940_pilon:118112..118756+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra167.t1 ID=Ggra167.t1|Name=Ggra167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000940_pilon:118112..118756+ (Gracilaria gracilis GNS1m male)
atGAATCCATCCGCCGATGAGCAACAGTTTTATCACTACTCTCAGGCTTC
CCAGTTTGTGCTTCGAGCCCAGATTGATTGTCGCAATCCCGGCACTGGCG
AGGTGTTCGATGTCAAAACGCGTGCCGTCGCCAAGATTTGACATGATCTG
CCAAACCACTTGCAGTACGCTTCGCACAAGCTTCGCTTTCCCAAGGGCAG
GACCGACTCGTACGAGCGTGAGTTCTACGATATGGTTCGCACAGTCTTCC
TCAAGTACGCGCTTCAACTCCGCATTGGACGCATGTCGGGCGGGCTTGTC
GCCTATCACAACACCACCGAGTTGCTCGCCTTGGAATACTTCTCGCTCAA
GGAGATTGAATCGTACGTGTTTGGTACTCAACGGTGGGCTGATGTCGCAT
TTGGTACTGCCATTAGTCTCCTGGAACGCATTCTGGATACCATCACCACC
ACTGTGCCTCTGGACAACACTGACGACCGGTTGAAGGTCATGTTGTACAC
AGAATGGTCCAAATTGAGAATGTACGTGTTCGTGCAGCACTTGCAGAGGG
ATGAACAAGATTCTTTCGGGGATGCCGAATTTCAGCGCCGAGAACGCGAT
GCGTGCCTGTACAGCAGCAGGATTCTCTACTCGTGCGCATTGTAA
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Coding sequence (CDS) from alignment at tig00000940_pilon:118112..118756+

>Ggra167.t1 ID=Ggra167.t1|Name=Ggra167.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000940_pilon:118112..118756+ (Gracilaria gracilis GNS1m male)
atGAATCCATCCGCCGATGAGCAACAGTTTTATCACTACTCTCAGGCTTC
CCAGTTTGTGCTTCGAGCCCAGATTGATTGTCGCAATCCCGGCACTGGCG
AGGTGACCGACTCGTACGAGCGTGAGTTCTACGATATGGTTCGCACAGTC
TTCCTCAAGTACGCGCTTCAACTCCGCATTGGACGCATGTCGGGCGGGCT
TGTCGCCTATCACAACACCACCGAGTTGCTCGCCTTGGAATACTTCTCGC
TCAAGGAGATTGAATCGTACGTGTTTGGTACTCAACGGTGGGCTGATGTC
GCATTTGGTACTGCCATTAGTCTCCTGGAACGCATTCTGGATACCATCAC
CACCACTGTGCCTCTGGACAACACTGACGACCGGTTGAAGGTCATGTTGT
ACACAGAATGGTCCAAATTGAGAATGTACGTGTTCGTGCAGCACTTGCAG
AGGGATGAACAAGATTCTTTCGGGGATGCCGAATTTCAGCGCCGAGAACG
CGATGCGTGCCTGTACAGCAGCAGGATTCTCTACTCGTGCGCATTGTAA
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