Ggra1666.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1666.t1
Unique NameGgra1666.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:295221..295976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1666Ggra1666Gracilaria gracilis GNS1m malegenetig00000050_pilon 295221..295976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1666.t1.stop1Ggra1666.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 295221..295223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1666.t1.CDS1Ggra1666.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 295221..295976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1666.t1.exon1Ggra1666.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 295221..295976 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1666.t1.start1Ggra1666.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 295974..295976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1666.t1Ggra1666.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 295221..295976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1666.t1 ID=Ggra1666.t1|Name=Ggra1666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MKKRRGRQPRQSLVSASLHQSIVEFAHKIGSPSLHTDFRDFSGWNQRISG
AQYEPAWRQLAQEVLRSSQDVGSNRLSDLKRDVIFNIMPLVVKKKPHETD
KMVSTNARRQLINNKTSKQPTLMTMLEKHIEQLNSMSGRSSGAGSSSMAH
ALAMSSSSAMGAHAAPRANHSSTGDFRRGDRGSSSGSSSRSGDRHSVRTS
TAMEIATLLSGEASSSGAASSSHHLLPSFTQLDAHIQARKEREKRDKRHR
R*
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spliced messenger RNA

>Ggra1666.t1 ID=Ggra1666.t1|Name=Ggra1666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000050_pilon:295221..295976- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGAGGAGAGGACGCCAACCACGTCAATCACTCGTGTCGGCCAG
CTTGCATCAATCCATCGTGGAGTTTGCCCACAAGATTGGTTCTCCTTCCC
TTCACACTGATTTTCGAGACTTTTCGGGATGGAACCAGAGGATAAGCGGC
GCGCAGTATGAGCCGGCATGGCGTCAGCTCGCGCAAGAAGTACTCAGATC
TTCGCAAGACGTGGGCTCCAACCGTCTTTCAGATCTGAAGCGAGATGTTA
TCTTTAACATCATGCCGCTTGTGGTCAAGAAGAAACCGCATGAAACCGAC
AAGATGGTAAGCACTAACGCCCGCCGTCAACTGATCAACAACAAAACTTC
CAAACAGCCCACCCTTATGACGATGCTGGAAAAACACATTGAGCAGCTTA
ACTCAATGTCGGGCAGGAGTTCGGGCGCTGGGTCATCATCTATGGCACAC
GCTTTGGCCATGTCTAGTTCGTCGGCCATGGGCGCTCACGCGGCACCACG
TGCCAACCATTCTTCGACCGGCGACTTTCGCAGGGGAGATCGAGGCTCCT
CCAGTGGATCTTCGTCCCGCTCGGGCGACAGGCATTCCGTGAGGACTTCG
ACGGCAATGGAGATCGCCACATTGCTGTCTGGTGAGGCATCTTCTTCAGG
CGCCGCGAGTTCGTCACACCACCTGTTGCCGTCGTTCACGCAACTGGACG
CTCATATTCAGGCTCGGAAAGAGAGGGAGAAGCGTGACAAGAGACATAGG
CGTTGA
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protein sequence of Ggra1666.t1

>Ggra1666.t1 ID=Ggra1666.t1|Name=Ggra1666.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MKKRRGRQPRQSLVSASLHQSIVEFAHKIGSPSLHTDFRDFSGWNQRISG
AQYEPAWRQLAQEVLRSSQDVGSNRLSDLKRDVIFNIMPLVVKKKPHETD
KMVSTNARRQLINNKTSKQPTLMTMLEKHIEQLNSMSGRSSGAGSSSMAH
ALAMSSSSAMGAHAAPRANHSSTGDFRRGDRGSSSGSSSRSGDRHSVRTS
TAMEIATLLSGEASSSGAASSSHHLLPSFTQLDAHIQARKEREKRDKRHR
R*
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mRNA from alignment at tig00000050_pilon:295221..295976-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1666.t1 ID=Ggra1666.t1|Name=Ggra1666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000050_pilon:295221..295976- (Gracilaria gracilis GNS1m male)
ATGAAGAAGAGGAGAGGACGCCAACCACGTCAATCACTCGTGTCGGCCAG
CTTGCATCAATCCATCGTGGAGTTTGCCCACAAGATTGGTTCTCCTTCCC
TTCACACTGATTTTCGAGACTTTTCGGGATGGAACCAGAGGATAAGCGGC
GCGCAGTATGAGCCGGCATGGCGTCAGCTCGCGCAAGAAGTACTCAGATC
TTCGCAAGACGTGGGCTCCAACCGTCTTTCAGATCTGAAGCGAGATGTTA
TCTTTAACATCATGCCGCTTGTGGTCAAGAAGAAACCGCATGAAACCGAC
AAGATGGTAAGCACTAACGCCCGCCGTCAACTGATCAACAACAAAACTTC
CAAACAGCCCACCCTTATGACGATGCTGGAAAAACACATTGAGCAGCTTA
ACTCAATGTCGGGCAGGAGTTCGGGCGCTGGGTCATCATCTATGGCACAC
GCTTTGGCCATGTCTAGTTCGTCGGCCATGGGCGCTCACGCGGCACCACG
TGCCAACCATTCTTCGACCGGCGACTTTCGCAGGGGAGATCGAGGCTCCT
CCAGTGGATCTTCGTCCCGCTCGGGCGACAGGCATTCCGTGAGGACTTCG
ACGGCAATGGAGATCGCCACATTGCTGTCTGGTGAGGCATCTTCTTCAGG
CGCCGCGAGTTCGTCACACCACCTGTTGCCGTCGTTCACGCAACTGGACG
CTCATATTCAGGCTCGGAAAGAGAGGGAGAAGCGTGACAAGAGACATAGG
CGTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:295221..295976-

>Ggra1666.t1 ID=Ggra1666.t1|Name=Ggra1666.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000050_pilon:295221..295976- (Gracilaria gracilis GNS1m male)
ATGAAGAAGAGGAGAGGACGCCAACCACGTCAATCACTCGTGTCGGCCAG
CTTGCATCAATCCATCGTGGAGTTTGCCCACAAGATTGGTTCTCCTTCCC
TTCACACTGATTTTCGAGACTTTTCGGGATGGAACCAGAGGATAAGCGGC
GCGCAGTATGAGCCGGCATGGCGTCAGCTCGCGCAAGAAGTACTCAGATC
TTCGCAAGACGTGGGCTCCAACCGTCTTTCAGATCTGAAGCGAGATGTTA
TCTTTAACATCATGCCGCTTGTGGTCAAGAAGAAACCGCATGAAACCGAC
AAGATGGTAAGCACTAACGCCCGCCGTCAACTGATCAACAACAAAACTTC
CAAACAGCCCACCCTTATGACGATGCTGGAAAAACACATTGAGCAGCTTA
ACTCAATGTCGGGCAGGAGTTCGGGCGCTGGGTCATCATCTATGGCACAC
GCTTTGGCCATGTCTAGTTCGTCGGCCATGGGCGCTCACGCGGCACCACG
TGCCAACCATTCTTCGACCGGCGACTTTCGCAGGGGAGATCGAGGCTCCT
CCAGTGGATCTTCGTCCCGCTCGGGCGACAGGCATTCCGTGAGGACTTCG
ACGGCAATGGAGATCGCCACATTGCTGTCTGGTGAGGCATCTTCTTCAGG
CGCCGCGAGTTCGTCACACCACCTGTTGCCGTCGTTCACGCAACTGGACG
CTCATATTCAGGCTCGGAAAGAGAGGGAGAAGCGTGACAAGAGACATAGG
CGTTGA
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