Ggra1661.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1661.t1
Unique Name	Ggra1661.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	643

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:285435..287363 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	90675.XP_010474326.1
PFAMs	SPA
Max annot lvl	35493\|Streptophyta
Evalue	3.66e-40
EggNOG OGs	KOG2432@1\|root,KOG2432@2759\|Eukaryota,37NPJ@33090\|Viridiplantae,3GBAI@35493\|Streptophyta,3HPPV@3699\|Brassicales
Description	Stabilization of polarity axis
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1661	Ggra1661	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 285435..287363 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1661.t1.stop1	Ggra1661.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 285435..285437 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1661.t1.CDS1	Ggra1661.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 285435..287363 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1661.t1.exon1	Ggra1661.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 285435..287363 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1661.t1.start1	Ggra1661.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 287361..287363 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1661.t1	Ggra1661.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 285435..287363 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:285435..287363-
coding sequence from alignment at tig00000050_pilon:285435..287363-

mRNA sequence

>Ggra1661.t1 ID=Ggra1661.t1|Name=Ggra1661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=643bp
MRMLGVAEPRHDSAAPRQHALSTLPPTLPFDIWSRRNVATCFRNDDAHPS
PIAACEPWITAFLIIGFDLDKGQVVEACVPNNVLTHAEKEAICYYAMPDS
AAGGTGHEDALYTFRVARDSNGRERKTLLAHTLFRQAPDKTNPRGYFQKA
VVVLTSASFITLASVLLSSLSSKAFAHGEKALFRAVEDVSSWPDPRVHND
GRTLELPFVDETVTLSVPQTFLRSFAAPDAILMVNGTRSTDNISPTSVDY
EPWSPSYSSKDHTTQAAGLCTPDLVRMWPLSSSSTKSSAQPFHEVNLAYA
LQGVYEKLWSIWELVVLGEPLLVLGATPSECASAVLCIVGIIHPLPFVGD
WRPYYCIQDSTYTELMGLKKSKMFPDGAVYGVTNSHLVDTLPFEHILVLP
GSEVAGKHFRPGLRSTHRSSLYKARQITSALLAALAASVKGGANADQLSL
ELRDVIYEKITKPFLGVFDRYLVPCWSDGRSLTDEPNVSDPFDRHLSLPD
FEVEKFPTPEDLCYASGNMGKGSGNPKRMRALYERFVRGPVFREWWHEAR
RAAERQCQAVRRKLMVEACSRGTLTRKAGEGRKQLADLIARVEKELQVVD
ESDRTLFKKLTILADGLRTELVRSVGESIDNHLDNESAMLLV*

spliced messenger RNA

>Ggra1661.t1 ID=Ggra1661.t1|Name=Ggra1661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00000050_pilon:285435..287363- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGCTGGGCGTTGCGGAGCCCCGTCATGACTCCGCCGCCCCACG
CCAGCATGCGCTTTCGACACTACCACCCACGCTTCCTTTTGACATCTGGA
GCCGGCGAAACGTTGCAACTTGCTTTCGCAATGACGACGCCCATCCCAGC
CCAATTGCCGCCTGCGAACCGTGGATAACCGCTTTTCTCATCATAGGCTT
TGACCTCGATAAAGGGCAGGTCGTTGAAGCATGCGTTCCGAACAATGTGC
TCACGCATGCCGAGAAAGAGGCTATATGCTACTATGCAATGCCGGACTCG
GCCGCTGGCGGCACTGGTCACGAAGACGCTCTGTACACCTTTCGCGTAGC
CCGCGATTCCAATGGAAGGGAGCGCAAGACGCTCCTAGCGCACACGCTCT
TCCGTCAGGCGCCGGACAAAACCAATCCTAGAGGCTACTTTCAAAAAGCA
GTGGTCGTACTCACTTCCGCGTCTTTCATTACTCTTGCTAGCGTATTGCT
CAGCAGTTTGTCGTCAAAAGCTTTTGCACACGGCGAAAAGGCCTTGTTCC
GCGCCGTTGAGGACGTTTCTTCCTGGCCTGACCCTCGAGTGCACAACGAT
GGGCGCACTCTTGAGTTGCCTTTTGTTGACGAGACCGTGACTTTGTCTGT
GCCTCAAACGTTCCTTCGCTCATTCGCAGCACCAGATGCTATCTTGATGG
TAAATGGCACACGAAGCACGGACAATATTTCACCCACGAGCGTTGATTAT
GAACCGTGGTCTCCGTCCTATTCGAGCAAAGATCATACTACTCAAGCGGC
AGGGTTATGCACACCAGACTTGGTTCGCATGTGGCCGCTCTCTAGCTCGT
CGACAAAGTCTTCCGCACAACCTTTTCATGAAGTGAATCTCGCGTACGCA
CTGCAAGGCGTGTATGAAAAGCTTTGGTCCATATGGGAACTTGTTGTCCT
AGGAGAGCCTCTACTTGTTTTGGGCGCTACACCCTCTGAGTGTGCATCGG
CTGTGCTGTGCATAGTTGGCATAATTCACCCGCTCCCTTTTGTCGGCGAC
TGGCGTCCGTATTATTGTATACAGGATTCGACATACACGGAACTTATGGG
TCTGAAGAAAAGCAAGATGTTCCCAGATGGAGCCGTTTACGGTGTTACAA
ATAGCCATTTGGTGGATACTCTTCCATTTGAACATATCCTTGTTCTTCCC
GGATCAGAAGTAGCTGGGAAGCATTTCAGACCCGGGCTAAGAAGCACCCA
CAGGTCATCACTTTACAAGGCGCGTCAGATAACAAGCGCGCTGCTTGCAG
CACTAGCCGCCTCGGTTAAAGGCGGTGCGAATGCAGATCAGTTATCGCTC
GAACTACGAGATGTTATATATGAAAAGATCACAAAGCCATTTCTTGGAGT
GTTTGACAGATATCTCGTCCCTTGTTGGAGTGATGGGAGGTCCCTAACCG
ATGAACCGAATGTATCAGATCCGTTTGACAGACATTTAAGCCTTCCTGAT
TTCGAAGTAGAAAAGTTCCCCACACCTGAAGATCTGTGCTATGCTTCGGG
CAACATGGGCAAGGGTTCGGGAAACCCCAAAAGGATGCGAGCGCTTTACG
AACGATTCGTGCGTGGACCAGTTTTTCGAGAATGGTGGCACGAAGCGCGG
AGAGCCGCTGAACGACAGTGCCAGGCTGTGCGTCGGAAGCTGATGGTTGA
AGCATGTTCACGAGGCACGTTGACAAGAAAGGCTGGCGAAGGGCGGAAGC
AATTGGCAGACTTGATAGCCCGAGTGGAAAAGGAACTTCAGGTTGTGGAT
GAAAGTGATAGGACACTGTTCAAAAAGCTGACGATACTGGCAGACGGGTT
AAGAACGGAGTTAGTTCGTTCCGTTGGGGAATCAATAGATAATCATTTGG
ACAATGAGTCGGCGATGCTTCTCGTGTAG

protein sequence of Ggra1661.t1

>Ggra1661.t1 ID=Ggra1661.t1|Name=Ggra1661.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=643bp
MRMLGVAEPRHDSAAPRQHALSTLPPTLPFDIWSRRNVATCFRNDDAHPS
PIAACEPWITAFLIIGFDLDKGQVVEACVPNNVLTHAEKEAICYYAMPDS
AAGGTGHEDALYTFRVARDSNGRERKTLLAHTLFRQAPDKTNPRGYFQKA
VVVLTSASFITLASVLLSSLSSKAFAHGEKALFRAVEDVSSWPDPRVHND
GRTLELPFVDETVTLSVPQTFLRSFAAPDAILMVNGTRSTDNISPTSVDY
EPWSPSYSSKDHTTQAAGLCTPDLVRMWPLSSSSTKSSAQPFHEVNLAYA
LQGVYEKLWSIWELVVLGEPLLVLGATPSECASAVLCIVGIIHPLPFVGD
WRPYYCIQDSTYTELMGLKKSKMFPDGAVYGVTNSHLVDTLPFEHILVLP
GSEVAGKHFRPGLRSTHRSSLYKARQITSALLAALAASVKGGANADQLSL
ELRDVIYEKITKPFLGVFDRYLVPCWSDGRSLTDEPNVSDPFDRHLSLPD
FEVEKFPTPEDLCYASGNMGKGSGNPKRMRALYERFVRGPVFREWWHEAR
RAAERQCQAVRRKLMVEACSRGTLTRKAGEGRKQLADLIARVEKELQVVD
ESDRTLFKKLTILADGLRTELVRSVGESIDNHLDNESAMLLV*

mRNA from alignment at tig00000050_pilon:285435..287363-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1661.t1 ID=Ggra1661.t1|Name=Ggra1661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00000050_pilon:285435..287363- (Gracilaria gracilis GNS1m male)
ATGCGCATGCTGGGCGTTGCGGAGCCCCGTCATGACTCCGCCGCCCCACG
CCAGCATGCGCTTTCGACACTACCACCCACGCTTCCTTTTGACATCTGGA
GCCGGCGAAACGTTGCAACTTGCTTTCGCAATGACGACGCCCATCCCAGC
CCAATTGCCGCCTGCGAACCGTGGATAACCGCTTTTCTCATCATAGGCTT
TGACCTCGATAAAGGGCAGGTCGTTGAAGCATGCGTTCCGAACAATGTGC
TCACGCATGCCGAGAAAGAGGCTATATGCTACTATGCAATGCCGGACTCG
GCCGCTGGCGGCACTGGTCACGAAGACGCTCTGTACACCTTTCGCGTAGC
CCGCGATTCCAATGGAAGGGAGCGCAAGACGCTCCTAGCGCACACGCTCT
TCCGTCAGGCGCCGGACAAAACCAATCCTAGAGGCTACTTTCAAAAAGCA
GTGGTCGTACTCACTTCCGCGTCTTTCATTACTCTTGCTAGCGTATTGCT
CAGCAGTTTGTCGTCAAAAGCTTTTGCACACGGCGAAAAGGCCTTGTTCC
GCGCCGTTGAGGACGTTTCTTCCTGGCCTGACCCTCGAGTGCACAACGAT
GGGCGCACTCTTGAGTTGCCTTTTGTTGACGAGACCGTGACTTTGTCTGT
GCCTCAAACGTTCCTTCGCTCATTCGCAGCACCAGATGCTATCTTGATGG
TAAATGGCACACGAAGCACGGACAATATTTCACCCACGAGCGTTGATTAT
GAACCGTGGTCTCCGTCCTATTCGAGCAAAGATCATACTACTCAAGCGGC
AGGGTTATGCACACCAGACTTGGTTCGCATGTGGCCGCTCTCTAGCTCGT
CGACAAAGTCTTCCGCACAACCTTTTCATGAAGTGAATCTCGCGTACGCA
CTGCAAGGCGTGTATGAAAAGCTTTGGTCCATATGGGAACTTGTTGTCCT
AGGAGAGCCTCTACTTGTTTTGGGCGCTACACCCTCTGAGTGTGCATCGG
CTGTGCTGTGCATAGTTGGCATAATTCACCCGCTCCCTTTTGTCGGCGAC
TGGCGTCCGTATTATTGTATACAGGATTCGACATACACGGAACTTATGGG
TCTGAAGAAAAGCAAGATGTTCCCAGATGGAGCCGTTTACGGTGTTACAA
ATAGCCATTTGGTGGATACTCTTCCATTTGAACATATCCTTGTTCTTCCC
GGATCAGAAGTAGCTGGGAAGCATTTCAGACCCGGGCTAAGAAGCACCCA
CAGGTCATCACTTTACAAGGCGCGTCAGATAACAAGCGCGCTGCTTGCAG
CACTAGCCGCCTCGGTTAAAGGCGGTGCGAATGCAGATCAGTTATCGCTC
GAACTACGAGATGTTATATATGAAAAGATCACAAAGCCATTTCTTGGAGT
GTTTGACAGATATCTCGTCCCTTGTTGGAGTGATGGGAGGTCCCTAACCG
ATGAACCGAATGTATCAGATCCGTTTGACAGACATTTAAGCCTTCCTGAT
TTCGAAGTAGAAAAGTTCCCCACACCTGAAGATCTGTGCTATGCTTCGGG
CAACATGGGCAAGGGTTCGGGAAACCCCAAAAGGATGCGAGCGCTTTACG
AACGATTCGTGCGTGGACCAGTTTTTCGAGAATGGTGGCACGAAGCGCGG
AGAGCCGCTGAACGACAGTGCCAGGCTGTGCGTCGGAAGCTGATGGTTGA
AGCATGTTCACGAGGCACGTTGACAAGAAAGGCTGGCGAAGGGCGGAAGC
AATTGGCAGACTTGATAGCCCGAGTGGAAAAGGAACTTCAGGTTGTGGAT
GAAAGTGATAGGACACTGTTCAAAAAGCTGACGATACTGGCAGACGGGTT
AAGAACGGAGTTAGTTCGTTCCGTTGGGGAATCAATAGATAATCATTTGG
ACAATGAGTCGGCGATGCTTCTCGTGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:285435..287363-

>Ggra1661.t1 ID=Ggra1661.t1|Name=Ggra1661.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1929bp|location=Sequence derived from alignment at tig00000050_pilon:285435..287363- (Gracilaria gracilis GNS1m male)
ATGCGCATGCTGGGCGTTGCGGAGCCCCGTCATGACTCCGCCGCCCCACG
CCAGCATGCGCTTTCGACACTACCACCCACGCTTCCTTTTGACATCTGGA
GCCGGCGAAACGTTGCAACTTGCTTTCGCAATGACGACGCCCATCCCAGC
CCAATTGCCGCCTGCGAACCGTGGATAACCGCTTTTCTCATCATAGGCTT
TGACCTCGATAAAGGGCAGGTCGTTGAAGCATGCGTTCCGAACAATGTGC
TCACGCATGCCGAGAAAGAGGCTATATGCTACTATGCAATGCCGGACTCG
GCCGCTGGCGGCACTGGTCACGAAGACGCTCTGTACACCTTTCGCGTAGC
CCGCGATTCCAATGGAAGGGAGCGCAAGACGCTCCTAGCGCACACGCTCT
TCCGTCAGGCGCCGGACAAAACCAATCCTAGAGGCTACTTTCAAAAAGCA
GTGGTCGTACTCACTTCCGCGTCTTTCATTACTCTTGCTAGCGTATTGCT
CAGCAGTTTGTCGTCAAAAGCTTTTGCACACGGCGAAAAGGCCTTGTTCC
GCGCCGTTGAGGACGTTTCTTCCTGGCCTGACCCTCGAGTGCACAACGAT
GGGCGCACTCTTGAGTTGCCTTTTGTTGACGAGACCGTGACTTTGTCTGT
GCCTCAAACGTTCCTTCGCTCATTCGCAGCACCAGATGCTATCTTGATGG
TAAATGGCACACGAAGCACGGACAATATTTCACCCACGAGCGTTGATTAT
GAACCGTGGTCTCCGTCCTATTCGAGCAAAGATCATACTACTCAAGCGGC
AGGGTTATGCACACCAGACTTGGTTCGCATGTGGCCGCTCTCTAGCTCGT
CGACAAAGTCTTCCGCACAACCTTTTCATGAAGTGAATCTCGCGTACGCA
CTGCAAGGCGTGTATGAAAAGCTTTGGTCCATATGGGAACTTGTTGTCCT
AGGAGAGCCTCTACTTGTTTTGGGCGCTACACCCTCTGAGTGTGCATCGG
CTGTGCTGTGCATAGTTGGCATAATTCACCCGCTCCCTTTTGTCGGCGAC
TGGCGTCCGTATTATTGTATACAGGATTCGACATACACGGAACTTATGGG
TCTGAAGAAAAGCAAGATGTTCCCAGATGGAGCCGTTTACGGTGTTACAA
ATAGCCATTTGGTGGATACTCTTCCATTTGAACATATCCTTGTTCTTCCC
GGATCAGAAGTAGCTGGGAAGCATTTCAGACCCGGGCTAAGAAGCACCCA
CAGGTCATCACTTTACAAGGCGCGTCAGATAACAAGCGCGCTGCTTGCAG
CACTAGCCGCCTCGGTTAAAGGCGGTGCGAATGCAGATCAGTTATCGCTC
GAACTACGAGATGTTATATATGAAAAGATCACAAAGCCATTTCTTGGAGT
GTTTGACAGATATCTCGTCCCTTGTTGGAGTGATGGGAGGTCCCTAACCG
ATGAACCGAATGTATCAGATCCGTTTGACAGACATTTAAGCCTTCCTGAT
TTCGAAGTAGAAAAGTTCCCCACACCTGAAGATCTGTGCTATGCTTCGGG
CAACATGGGCAAGGGTTCGGGAAACCCCAAAAGGATGCGAGCGCTTTACG
AACGATTCGTGCGTGGACCAGTTTTTCGAGAATGGTGGCACGAAGCGCGG
AGAGCCGCTGAACGACAGTGCCAGGCTGTGCGTCGGAAGCTGATGGTTGA
AGCATGTTCACGAGGCACGTTGACAAGAAAGGCTGGCGAAGGGCGGAAGC
AATTGGCAGACTTGATAGCCCGAGTGGAAAAGGAACTTCAGGTTGTGGAT
GAAAGTGATAGGACACTGTTCAAAAAGCTGACGATACTGGCAGACGGGTT
AAGAACGGAGTTAGTTCGTTCCGTTGGGGAATCAATAGATAATCATTTGG
ACAATGAGTCGGCGATGCTTCTCGTGTAG