Ggra166.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra166.t1
Unique NameGgra166.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length621
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000940_piloncontigtig00000940_pilon:77904..79766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra166Ggra166Gracilaria gracilis GNS1m malegenetig00000940_pilon 77904..79766 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra166.t1.stop1Ggra166.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000940_pilon 77904..77906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra166.t1.CDS1Ggra166.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000940_pilon 77904..79766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra166.t1.exon1Ggra166.t1.exon1Gracilaria gracilis GNS1m maleexontig00000940_pilon 77904..79766 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra166.t1.start1Ggra166.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000940_pilon 79764..79766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra166.t1Ggra166.t1Gracilaria gracilis GNS1m malepolypeptidetig00000940_pilon 77904..79766 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra166.t1 ID=Ggra166.t1|Name=Ggra166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp
MGPPPPPPPPPPALPRRKINAPPPPSSSRPAASPAPPPPPARSAPPAAPA
PPPPPSRSAPSGAPAPPPPPPPSSARASGGGGGGAPPPPPPPPPPPPPSG
NKSGSSAPPPPPPPPPAPSGASSKGGAPPPPPPPPPSSKSSRPASMPPPP
PPLKPSASRSSKAPASQNKPATPAKPPRPGSAPVTSNADRTERSTRRFGR
RKEPLATDEHTRRAALSSKSFRNRLGRGANKESLLTKAQEVPEDLPDLPD
MGTDKTEAARSKLEKHSHQEAKIKSRRKGKRQHSSLFGKKSSSSAANVAS
DTSESVEDEPKAPEDPAPLDILRTARISKKMFEGEIAHKYAPVQFTPFGQ
DWATDSFALIHNAIKAEVRDLQNMAYVMQRRKMLLTLTHIDIFYEWWADF
NQFLDVAITIEEEVYYGWVGSKDSLRGPFKRSERMRVYGATRNTIQKLTE
YKEKFLPYLPVGERLEGLLVLIKGFDQLLQHHSDVARSLPNYLQTLFNKK
EKESNLKAVIAAFRNSDGYNRNLVLLAKWMPDRMMKRWALSHLRTKDLIS
FKGWRTVITREHCNLVKQFEDVITGEEDNFGEPVIGAAMAINEEMREHID
NNRSSVRALPNGNGVAAGKS*
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spliced messenger RNA

>Ggra166.t1 ID=Ggra166.t1|Name=Ggra166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00000940_pilon:77904..79766- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCCACCTCCGCCCCCGCCCCCGCCGCCTCCGGCGTTACCTCGTCG
CAAAATCAACGCCCCTCCCCCTCCGTCATCCTCGCGACCGGCAGCATCGC
CCGCACCACCGCCACCCCCCGCGCGTTCTGCACCTCCTGCTGCTCCAGCC
CCACCGCCACCACCTTCTCGCTCCGCTCCGTCAGGTGCTCCTGCCCCACC
GCCGCCGCCGCCCCCATCCTCGGCCAGAGCATCAGGCGGCGGCGGCGGTG
GCGCCCCCCCTCCGCCCCCCCCACCACCACCACCACCACCACCTTCAGGG
AACAAGTCTGGCTCATCGGCTCCTCCCCCACCTCCGCCGCCTCCGCCAGC
CCCATCGGGTGCGTCATCCAAGGGCGGAGCCCCACCGCCACCGCCACCGC
CACCGCCGTCATCCAAATCGTCTCGTCCAGCGTCTATGCCACCCCCTCCG
CCGCCGTTGAAGCCATCGGCTTCCAGGTCTTCTAAAGCCCCTGCCTCCCA
AAACAAACCGGCAACCCCGGCTAAGCCTCCGCGTCCAGGTTCTGCGCCTG
TCACAAGTAACGCCGACAGGACTGAAAGATCCACTCGACGCTTCGGTCGT
CGGAAGGAGCCGCTTGCTACCGACGAGCATACCAGACGAGCGGCGTTGTC
CAGTAAGAGTTTCAGGAATCGACTTGGACGTGGCGCCAATAAGGAGAGTT
TGCTTACAAAGGCACAGGAGGTTCCCGAAGATCTTCCAGATCTTCCAGAC
ATGGGCACTGATAAGACGGAAGCCGCTAGGAGCAAGTTGGAGAAGCATTC
ACACCAGGAAGCCAAAATCAAGTCACGGAGAAAGGGCAAGAGGCAGCACT
CTTCATTATTCGGGAAGAAATCTTCGTCCTCTGCCGCCAATGTTGCTTCC
GATACTAGTGAATCGGTTGAAGATGAACCGAAAGCACCGGAGGATCCGGC
ACCTCTCGATATTTTGCGAACTGCACGAATATCCAAGAAGATGTTTGAGG
GAGAGATTGCACACAAATACGCACCCGTGCAATTCACTCCGTTCGGACAA
GATTGGGCCACTGATTCGTTTGCCCTTATCCACAATGCCATCAAAGCAGA
AGTTCGCGATCTTCAGAACATGGCATACGTGATGCAAAGACGCAAGATGC
TTCTGACACTGACTCACATTGATATTTTTTACGAGTGGTGGGCTGACTTT
AACCAGTTCCTAGACGTGGCTATCACAATTGAAGAGGAAGTGTACTACGG
CTGGGTGGGTTCAAAGGATTCGCTCCGTGGACCGTTTAAGAGGAGCGAAC
GCATGCGCGTATATGGAGCTACACGCAACACCATTCAGAAACTAACCGAG
TACAAGGAGAAGTTCTTGCCATACTTACCGGTTGGCGAAAGACTTGAAGG
ACTCTTGGTACTGATCAAGGGCTTTGATCAACTGCTGCAACATCATTCCG
ATGTGGCACGAAGTTTGCCGAACTACTTACAAACGCTGTTTAACAAGAAG
GAGAAAGAATCTAACTTGAAAGCGGTCATAGCGGCATTTAGAAATTCAGA
CGGATACAATCGCAACTTGGTGCTACTTGCGAAGTGGATGCCCGACCGAA
TGATGAAACGCTGGGCACTGTCGCATCTGCGCACCAAGGACTTGATTTCT
TTCAAAGGATGGAGAACGGTGATCACGAGAGAACACTGCAACCTTGTGAA
GCAATTTGAGGATGTGATCACAGGAGAGGAGGACAATTTCGGAGAGCCGG
TGATCGGGGCGGCGATGGCCATCAACGAAGAGATGAGGGAACACATTGAT
AACAACAGGAGCTCTGTTCGGGCGCTACCAAATGGAAATGGTGTGGCGGC
TGGGAAGTCATAA
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protein sequence of Ggra166.t1

>Ggra166.t1 ID=Ggra166.t1|Name=Ggra166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=621bp
MGPPPPPPPPPPALPRRKINAPPPPSSSRPAASPAPPPPPARSAPPAAPA
PPPPPSRSAPSGAPAPPPPPPPSSARASGGGGGGAPPPPPPPPPPPPPSG
NKSGSSAPPPPPPPPPAPSGASSKGGAPPPPPPPPPSSKSSRPASMPPPP
PPLKPSASRSSKAPASQNKPATPAKPPRPGSAPVTSNADRTERSTRRFGR
RKEPLATDEHTRRAALSSKSFRNRLGRGANKESLLTKAQEVPEDLPDLPD
MGTDKTEAARSKLEKHSHQEAKIKSRRKGKRQHSSLFGKKSSSSAANVAS
DTSESVEDEPKAPEDPAPLDILRTARISKKMFEGEIAHKYAPVQFTPFGQ
DWATDSFALIHNAIKAEVRDLQNMAYVMQRRKMLLTLTHIDIFYEWWADF
NQFLDVAITIEEEVYYGWVGSKDSLRGPFKRSERMRVYGATRNTIQKLTE
YKEKFLPYLPVGERLEGLLVLIKGFDQLLQHHSDVARSLPNYLQTLFNKK
EKESNLKAVIAAFRNSDGYNRNLVLLAKWMPDRMMKRWALSHLRTKDLIS
FKGWRTVITREHCNLVKQFEDVITGEEDNFGEPVIGAAMAINEEMREHID
NNRSSVRALPNGNGVAAGKS*
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mRNA from alignment at tig00000940_pilon:77904..79766-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra166.t1 ID=Ggra166.t1|Name=Ggra166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00000940_pilon:77904..79766- (Gracilaria gracilis GNS1m male)
ATGGGTCCACCTCCGCCCCCGCCCCCGCCGCCTCCGGCGTTACCTCGTCG
CAAAATCAACGCCCCTCCCCCTCCGTCATCCTCGCGACCGGCAGCATCGC
CCGCACCACCGCCACCCCCCGCGCGTTCTGCACCTCCTGCTGCTCCAGCC
CCACCGCCACCACCTTCTCGCTCCGCTCCGTCAGGTGCTCCTGCCCCACC
GCCGCCGCCGCCCCCATCCTCGGCCAGAGCATCAGGCGGCGGCGGCGGTG
GCGCCCCCCCTCCGCCCCCCCCACCACCACCACCACCACCACCTTCAGGG
AACAAGTCTGGCTCATCGGCTCCTCCCCCACCTCCGCCGCCTCCGCCAGC
CCCATCGGGTGCGTCATCCAAGGGCGGAGCCCCACCGCCACCGCCACCGC
CACCGCCGTCATCCAAATCGTCTCGTCCAGCGTCTATGCCACCCCCTCCG
CCGCCGTTGAAGCCATCGGCTTCCAGGTCTTCTAAAGCCCCTGCCTCCCA
AAACAAACCGGCAACCCCGGCTAAGCCTCCGCGTCCAGGTTCTGCGCCTG
TCACAAGTAACGCCGACAGGACTGAAAGATCCACTCGACGCTTCGGTCGT
CGGAAGGAGCCGCTTGCTACCGACGAGCATACCAGACGAGCGGCGTTGTC
CAGTAAGAGTTTCAGGAATCGACTTGGACGTGGCGCCAATAAGGAGAGTT
TGCTTACAAAGGCACAGGAGGTTCCCGAAGATCTTCCAGATCTTCCAGAC
ATGGGCACTGATAAGACGGAAGCCGCTAGGAGCAAGTTGGAGAAGCATTC
ACACCAGGAAGCCAAAATCAAGTCACGGAGAAAGGGCAAGAGGCAGCACT
CTTCATTATTCGGGAAGAAATCTTCGTCCTCTGCCGCCAATGTTGCTTCC
GATACTAGTGAATCGGTTGAAGATGAACCGAAAGCACCGGAGGATCCGGC
ACCTCTCGATATTTTGCGAACTGCACGAATATCCAAGAAGATGTTTGAGG
GAGAGATTGCACACAAATACGCACCCGTGCAATTCACTCCGTTCGGACAA
GATTGGGCCACTGATTCGTTTGCCCTTATCCACAATGCCATCAAAGCAGA
AGTTCGCGATCTTCAGAACATGGCATACGTGATGCAAAGACGCAAGATGC
TTCTGACACTGACTCACATTGATATTTTTTACGAGTGGTGGGCTGACTTT
AACCAGTTCCTAGACGTGGCTATCACAATTGAAGAGGAAGTGTACTACGG
CTGGGTGGGTTCAAAGGATTCGCTCCGTGGACCGTTTAAGAGGAGCGAAC
GCATGCGCGTATATGGAGCTACACGCAACACCATTCAGAAACTAACCGAG
TACAAGGAGAAGTTCTTGCCATACTTACCGGTTGGCGAAAGACTTGAAGG
ACTCTTGGTACTGATCAAGGGCTTTGATCAACTGCTGCAACATCATTCCG
ATGTGGCACGAAGTTTGCCGAACTACTTACAAACGCTGTTTAACAAGAAG
GAGAAAGAATCTAACTTGAAAGCGGTCATAGCGGCATTTAGAAATTCAGA
CGGATACAATCGCAACTTGGTGCTACTTGCGAAGTGGATGCCCGACCGAA
TGATGAAACGCTGGGCACTGTCGCATCTGCGCACCAAGGACTTGATTTCT
TTCAAAGGATGGAGAACGGTGATCACGAGAGAACACTGCAACCTTGTGAA
GCAATTTGAGGATGTGATCACAGGAGAGGAGGACAATTTCGGAGAGCCGG
TGATCGGGGCGGCGATGGCCATCAACGAAGAGATGAGGGAACACATTGAT
AACAACAGGAGCTCTGTTCGGGCGCTACCAAATGGAAATGGTGTGGCGGC
TGGGAAGTCATAA
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Coding sequence (CDS) from alignment at tig00000940_pilon:77904..79766-

>Ggra166.t1 ID=Ggra166.t1|Name=Ggra166.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1863bp|location=Sequence derived from alignment at tig00000940_pilon:77904..79766- (Gracilaria gracilis GNS1m male)
ATGGGTCCACCTCCGCCCCCGCCCCCGCCGCCTCCGGCGTTACCTCGTCG
CAAAATCAACGCCCCTCCCCCTCCGTCATCCTCGCGACCGGCAGCATCGC
CCGCACCACCGCCACCCCCCGCGCGTTCTGCACCTCCTGCTGCTCCAGCC
CCACCGCCACCACCTTCTCGCTCCGCTCCGTCAGGTGCTCCTGCCCCACC
GCCGCCGCCGCCCCCATCCTCGGCCAGAGCATCAGGCGGCGGCGGCGGTG
GCGCCCCCCCTCCGCCCCCCCCACCACCACCACCACCACCACCTTCAGGG
AACAAGTCTGGCTCATCGGCTCCTCCCCCACCTCCGCCGCCTCCGCCAGC
CCCATCGGGTGCGTCATCCAAGGGCGGAGCCCCACCGCCACCGCCACCGC
CACCGCCGTCATCCAAATCGTCTCGTCCAGCGTCTATGCCACCCCCTCCG
CCGCCGTTGAAGCCATCGGCTTCCAGGTCTTCTAAAGCCCCTGCCTCCCA
AAACAAACCGGCAACCCCGGCTAAGCCTCCGCGTCCAGGTTCTGCGCCTG
TCACAAGTAACGCCGACAGGACTGAAAGATCCACTCGACGCTTCGGTCGT
CGGAAGGAGCCGCTTGCTACCGACGAGCATACCAGACGAGCGGCGTTGTC
CAGTAAGAGTTTCAGGAATCGACTTGGACGTGGCGCCAATAAGGAGAGTT
TGCTTACAAAGGCACAGGAGGTTCCCGAAGATCTTCCAGATCTTCCAGAC
ATGGGCACTGATAAGACGGAAGCCGCTAGGAGCAAGTTGGAGAAGCATTC
ACACCAGGAAGCCAAAATCAAGTCACGGAGAAAGGGCAAGAGGCAGCACT
CTTCATTATTCGGGAAGAAATCTTCGTCCTCTGCCGCCAATGTTGCTTCC
GATACTAGTGAATCGGTTGAAGATGAACCGAAAGCACCGGAGGATCCGGC
ACCTCTCGATATTTTGCGAACTGCACGAATATCCAAGAAGATGTTTGAGG
GAGAGATTGCACACAAATACGCACCCGTGCAATTCACTCCGTTCGGACAA
GATTGGGCCACTGATTCGTTTGCCCTTATCCACAATGCCATCAAAGCAGA
AGTTCGCGATCTTCAGAACATGGCATACGTGATGCAAAGACGCAAGATGC
TTCTGACACTGACTCACATTGATATTTTTTACGAGTGGTGGGCTGACTTT
AACCAGTTCCTAGACGTGGCTATCACAATTGAAGAGGAAGTGTACTACGG
CTGGGTGGGTTCAAAGGATTCGCTCCGTGGACCGTTTAAGAGGAGCGAAC
GCATGCGCGTATATGGAGCTACACGCAACACCATTCAGAAACTAACCGAG
TACAAGGAGAAGTTCTTGCCATACTTACCGGTTGGCGAAAGACTTGAAGG
ACTCTTGGTACTGATCAAGGGCTTTGATCAACTGCTGCAACATCATTCCG
ATGTGGCACGAAGTTTGCCGAACTACTTACAAACGCTGTTTAACAAGAAG
GAGAAAGAATCTAACTTGAAAGCGGTCATAGCGGCATTTAGAAATTCAGA
CGGATACAATCGCAACTTGGTGCTACTTGCGAAGTGGATGCCCGACCGAA
TGATGAAACGCTGGGCACTGTCGCATCTGCGCACCAAGGACTTGATTTCT
TTCAAAGGATGGAGAACGGTGATCACGAGAGAACACTGCAACCTTGTGAA
GCAATTTGAGGATGTGATCACAGGAGAGGAGGACAATTTCGGAGAGCCGG
TGATCGGGGCGGCGATGGCCATCAACGAAGAGATGAGGGAACACATTGAT
AACAACAGGAGCTCTGTTCGGGCGCTACCAAATGGAAATGGTGTGGCGGC
TGGGAAGTCATAA
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