Ggra1648.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1648.t1
Unique Name	Ggra1648.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:260279..261295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb06g004000.1
PFAMs	MBOAT_2
Max annot lvl	35493\|Streptophyta
Evalue	1.08e-18
EggNOG OGs	28JYB@1\|root,2QSCR@2759\|Eukaryota,37ZVT@33090\|Viridiplantae,3GPF2@35493\|Streptophyta,3KT79@4447\|Liliopsida,3IBDJ@38820\|Poales
Description	Membrane bound O-acyl transferase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1648	Ggra1648	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 260279..261295 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1648.t1.start1	Ggra1648.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 260279..260281 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1648.t1.CDS1	Ggra1648.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 260279..261295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1648.t1.exon1	Ggra1648.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 260279..261295 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1648.t1.stop1	Ggra1648.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 261293..261295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1648.t1	Ggra1648.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 260279..261295 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:260279..261295+
coding sequence from alignment at tig00000050_pilon:260279..261295+

mRNA sequence

>Ggra1648.t1 ID=Ggra1648.t1|Name=Ggra1648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MHELDENPIGWILEFGRGLFVVTMLQVFCGVWTVFVIQSKLAHHRKLQVC
MAMSSLLCVLSWFIFDMKTHLIGRVMGALSLVFTTPLHVIASIERHETVK
ADKLSTILRIAVPAAIPSGRHQPEEPVHQLLRGFIYVSCISKAVPFTMYA
IEEGGILRDVCGLLFVMFGASGILNIMSGCMGLVGVRSPSPFRNPFLASS
MASFWGGRWNATVSDALRVGVYEPLVKRGYSRARSVLACFFISGVAHELI
LIYCGILNSRGEWLAFFLLNGIAVLVEQQTMSQMPTPARRVISFVVLSTL
FHFLFVPVTVRTGMAEKGVQAMGAGAKLTEAFRQWVTS*

spliced messenger RNA

>Ggra1648.t1 ID=Ggra1648.t1|Name=Ggra1648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000050_pilon:260279..261295+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGAGCTAGATGAAAACCCTATAGGCTGGATCTTAGAGTTTGGGAG
AGGCCTCTTTGTTGTCACAATGTTGCAAGTGTTTTGCGGCGTTTGGACTG
TTTTCGTAATCCAGTCAAAGCTTGCCCATCACAGGAAGCTTCAGGTTTGC
ATGGCTATGTCCTCTTTATTATGTGTATTGTCTTGGTTCATCTTTGACAT
GAAAACTCATCTTATCGGCCGCGTCATGGGTGCATTGTCTTTGGTGTTTA
CCACTCCTCTGCATGTAATCGCCTCTATTGAAAGACATGAAACGGTTAAA
GCAGATAAACTGTCTACAATTTTGAGGATTGCGGTTCCAGCTGCAATTCC
CTCCGGGCGTCATCAACCGGAGGAGCCCGTACATCAACTCCTTCGTGGGT
TCATTTACGTGTCATGTATATCAAAAGCTGTTCCATTTACCATGTATGCT
ATTGAAGAAGGCGGTATTCTCAGAGATGTTTGCGGTCTTCTGTTTGTCAT
GTTCGGTGCCTCGGGGATCCTTAATATCATGTCTGGATGTATGGGTCTCG
TAGGGGTCAGAAGTCCCTCTCCATTTCGAAATCCTTTTCTCGCGTCTTCC
ATGGCGTCTTTCTGGGGTGGTCGATGGAACGCAACGGTTTCGGATGCACT
TAGGGTTGGTGTATATGAACCCCTTGTGAAACGCGGGTATTCGAGGGCTA
GGTCTGTCCTTGCGTGCTTTTTTATTTCAGGTGTTGCTCACGAACTGATA
CTCATTTACTGCGGCATTCTGAATTCGAGAGGGGAATGGCTTGCCTTTTT
CTTGCTCAATGGAATAGCAGTGCTCGTAGAACAACAAACCATGTCGCAAA
TGCCTACTCCTGCGCGCCGCGTTATTAGTTTCGTCGTTCTCTCCACTCTA
TTTCACTTTCTGTTCGTCCCGGTAACGGTACGAACAGGAATGGCTGAGAA
AGGCGTTCAAGCAATGGGGGCTGGGGCGAAGCTTACTGAAGCCTTTCGGC
AATGGGTGACGTCATAG

protein sequence of Ggra1648.t1

>Ggra1648.t1 ID=Ggra1648.t1|Name=Ggra1648.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MHELDENPIGWILEFGRGLFVVTMLQVFCGVWTVFVIQSKLAHHRKLQVC
MAMSSLLCVLSWFIFDMKTHLIGRVMGALSLVFTTPLHVIASIERHETVK
ADKLSTILRIAVPAAIPSGRHQPEEPVHQLLRGFIYVSCISKAVPFTMYA
IEEGGILRDVCGLLFVMFGASGILNIMSGCMGLVGVRSPSPFRNPFLASS
MASFWGGRWNATVSDALRVGVYEPLVKRGYSRARSVLACFFISGVAHELI
LIYCGILNSRGEWLAFFLLNGIAVLVEQQTMSQMPTPARRVISFVVLSTL
FHFLFVPVTVRTGMAEKGVQAMGAGAKLTEAFRQWVTS*

mRNA from alignment at tig00000050_pilon:260279..261295+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1648.t1 ID=Ggra1648.t1|Name=Ggra1648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000050_pilon:260279..261295+ (Gracilaria gracilis GNS1m male)
ATGCACGAGCTAGATGAAAACCCTATAGGCTGGATCTTAGAGTTTGGGAG
AGGCCTCTTTGTTGTCACAATGTTGCAAGTGTTTTGCGGCGTTTGGACTG
TTTTCGTAATCCAGTCAAAGCTTGCCCATCACAGGAAGCTTCAGGTTTGC
ATGGCTATGTCCTCTTTATTATGTGTATTGTCTTGGTTCATCTTTGACAT
GAAAACTCATCTTATCGGCCGCGTCATGGGTGCATTGTCTTTGGTGTTTA
CCACTCCTCTGCATGTAATCGCCTCTATTGAAAGACATGAAACGGTTAAA
GCAGATAAACTGTCTACAATTTTGAGGATTGCGGTTCCAGCTGCAATTCC
CTCCGGGCGTCATCAACCGGAGGAGCCCGTACATCAACTCCTTCGTGGGT
TCATTTACGTGTCATGTATATCAAAAGCTGTTCCATTTACCATGTATGCT
ATTGAAGAAGGCGGTATTCTCAGAGATGTTTGCGGTCTTCTGTTTGTCAT
GTTCGGTGCCTCGGGGATCCTTAATATCATGTCTGGATGTATGGGTCTCG
TAGGGGTCAGAAGTCCCTCTCCATTTCGAAATCCTTTTCTCGCGTCTTCC
ATGGCGTCTTTCTGGGGTGGTCGATGGAACGCAACGGTTTCGGATGCACT
TAGGGTTGGTGTATATGAACCCCTTGTGAAACGCGGGTATTCGAGGGCTA
GGTCTGTCCTTGCGTGCTTTTTTATTTCAGGTGTTGCTCACGAACTGATA
CTCATTTACTGCGGCATTCTGAATTCGAGAGGGGAATGGCTTGCCTTTTT
CTTGCTCAATGGAATAGCAGTGCTCGTAGAACAACAAACCATGTCGCAAA
TGCCTACTCCTGCGCGCCGCGTTATTAGTTTCGTCGTTCTCTCCACTCTA
TTTCACTTTCTGTTCGTCCCGGTAACGGTACGAACAGGAATGGCTGAGAA
AGGCGTTCAAGCAATGGGGGCTGGGGCGAAGCTTACTGAAGCCTTTCGGC
AATGGGTGACGTCATAG

Coding sequence (CDS) from alignment at tig00000050_pilon:260279..261295+

>Ggra1648.t1 ID=Ggra1648.t1|Name=Ggra1648.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000050_pilon:260279..261295+ (Gracilaria gracilis GNS1m male)
ATGCACGAGCTAGATGAAAACCCTATAGGCTGGATCTTAGAGTTTGGGAG
AGGCCTCTTTGTTGTCACAATGTTGCAAGTGTTTTGCGGCGTTTGGACTG
TTTTCGTAATCCAGTCAAAGCTTGCCCATCACAGGAAGCTTCAGGTTTGC
ATGGCTATGTCCTCTTTATTATGTGTATTGTCTTGGTTCATCTTTGACAT
GAAAACTCATCTTATCGGCCGCGTCATGGGTGCATTGTCTTTGGTGTTTA
CCACTCCTCTGCATGTAATCGCCTCTATTGAAAGACATGAAACGGTTAAA
GCAGATAAACTGTCTACAATTTTGAGGATTGCGGTTCCAGCTGCAATTCC
CTCCGGGCGTCATCAACCGGAGGAGCCCGTACATCAACTCCTTCGTGGGT
TCATTTACGTGTCATGTATATCAAAAGCTGTTCCATTTACCATGTATGCT
ATTGAAGAAGGCGGTATTCTCAGAGATGTTTGCGGTCTTCTGTTTGTCAT
GTTCGGTGCCTCGGGGATCCTTAATATCATGTCTGGATGTATGGGTCTCG
TAGGGGTCAGAAGTCCCTCTCCATTTCGAAATCCTTTTCTCGCGTCTTCC
ATGGCGTCTTTCTGGGGTGGTCGATGGAACGCAACGGTTTCGGATGCACT
TAGGGTTGGTGTATATGAACCCCTTGTGAAACGCGGGTATTCGAGGGCTA
GGTCTGTCCTTGCGTGCTTTTTTATTTCAGGTGTTGCTCACGAACTGATA
CTCATTTACTGCGGCATTCTGAATTCGAGAGGGGAATGGCTTGCCTTTTT
CTTGCTCAATGGAATAGCAGTGCTCGTAGAACAACAAACCATGTCGCAAA
TGCCTACTCCTGCGCGCCGCGTTATTAGTTTCGTCGTTCTCTCCACTCTA
TTTCACTTTCTGTTCGTCCCGGTAACGGTACGAACAGGAATGGCTGAGAA
AGGCGTTCAAGCAATGGGGGCTGGGGCGAAGCTTACTGAAGCCTTTCGGC
AATGGGTGACGTCATAG