Ggra1642.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1642.t1
Unique Name	Ggra1642.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	778

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:239177..241510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1642	Ggra1642	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 239177..241510 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1642.t1.start1	Ggra1642.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 239177..239179 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1642.t1.CDS1	Ggra1642.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 239177..241510 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1642.t1.exon1	Ggra1642.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 239177..241510 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1642.t1.stop1	Ggra1642.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 241508..241510 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1642.t1	Ggra1642.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 239177..241510 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:239177..241510+
coding sequence from alignment at tig00000050_pilon:239177..241510+

mRNA sequence

>Ggra1642.t1 ID=Ggra1642.t1|Name=Ggra1642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=778bp
MAQTTEPPPPVSPLPSVSNPRAKNKKKVRMQVIPHDEPSKPVDTFHVTIS
NVRATLRVAEARPVILKFAFDNYWHAETDVFTRDSVNPSWRFNLNSVCGL
DGRKPATADGLAPQLAPDADPIQPSARFVYETEFGYKLHRKYLIVTLCER
SPYQDVVWGTGIVPLDSVARGCEALNMSIFAKDALKHYGNVFCNITMTNV
QRVRAHLTDLRLSEYPEIFSYDVKLIYIEFGLHAFDRGFHRSTEKRSDAE
PRFSAQPALEFDTTLRDMLISSTPNAPSLKIFFSVHRQVARNRTEQIGVG
ALPVRMLFSKVRDGWMGLPTKFRVPLAEYRGIIRGKVLLRNIPQFSQLPG
CDLTNVDGTIMPQHVDLDNRRLLPWVKLPKAEERRLRLANGQDSNQSPMR
KPHHHFATSASDSLDEKSMNLESVLEHGAQPQFHQVPTLNVREGEFHTPV
SESEGGSEPSSRATSPRVDGRLFAAVDSAFVRDTHGKRSPLPQKTHQGEQ
HVPRAHESPSTVQRPAWTIQETGDDSTSTICKLRDKVNPHVVSHVEQIKL
FGALREANKDGDGESYEELSRLRISASPGRSKPRQHSDESSSSRFPPSRA
SDGTYDDHDSQSDMRSRQNKSGKSFGSSCTTEAGTELESTVLSEDSCQVG
SRTTTQDALTTNQKLNGYPPADERYEYEVDELAAGYDVSPDAPAPDGHLN
DASLEGGDEWLAVHDPGSSRFYFAHRYTQESLWLPPEWERMVDEEGRQYF
VDHASQTTQWAFPATEARAYRESVYAG*

spliced messenger RNA

>Ggra1642.t1 ID=Ggra1642.t1|Name=Ggra1642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2334bp|location=Sequence derived from alignment at tig00000050_pilon:239177..241510+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGACTACCGAGCCGCCCCCGCCCGTGTCGCCTCTCCCGTCCGT
GTCCAATCCGCGCGCCAAGAATAAGAAGAAGGTGCGCATGCAAGTCATCC
CGCACGACGAGCCATCCAAACCAGTCGACACATTTCACGTCACCATCTCC
AACGTTCGCGCCACGCTGCGCGTCGCCGAGGCGCGTCCCGTCATCCTCAA
GTTCGCCTTTGATAACTATTGGCATGCCGAGACTGACGTTTTCACCCGCG
ATTCCGTCAACCCTTCGTGGCGCTTCAACCTCAACTCTGTGTGCGGCCTT
GATGGCCGCAAACCGGCCACCGCTGATGGCCTTGCGCCGCAGCTCGCGCC
CGACGCCGACCCTATCCAACCAAGCGCGCGCTTCGTTTACGAGACCGAGT
TTGGCTACAAGCTGCACCGCAAGTACTTAATTGTCACATTGTGCGAGCGC
AGTCCGTACCAAGATGTTGTGTGGGGCACCGGTATCGTGCCGCTTGACTC
CGTTGCGCGCGGATGTGAGGCGCTCAACATGTCCATCTTCGCCAAAGATG
CGCTCAAACACTACGGCAACGTCTTTTGTAACATCACTATGACCAATGTA
CAACGCGTGCGAGCACATCTTACCGACCTCAGACTGTCAGAGTATCCCGA
AATCTTTAGTTACGACGTCAAACTTATCTACATCGAGTTTGGTCTACATG
CGTTTGACCGCGGCTTTCATCGAAGCACGGAGAAACGATCTGATGCCGAG
CCTCGCTTTTCTGCACAACCTGCGCTTGAATTTGATACCACTTTGCGTGA
TATGCTTATTTCTTCTACCCCGAACGCTCCTTCGCTCAAGATCTTTTTCT
CCGTTCATCGTCAGGTTGCGCGAAACCGAACCGAGCAGATTGGAGTTGGA
GCGCTTCCCGTGCGCATGCTCTTCTCCAAGGTGCGCGACGGCTGGATGGG
GTTACCCACCAAGTTTAGGGTACCTCTTGCCGAGTATCGCGGCATCATTC
GCGGCAAGGTGTTGCTTCGCAATATTCCCCAGTTCTCGCAGCTGCCGGGA
TGTGATCTCACCAACGTTGACGGCACTATTATGCCTCAGCATGTCGATCT
CGATAATCGCAGACTGCTCCCATGGGTGAAGCTTCCCAAAGCGGAGGAGC
GTAGACTGCGCTTAGCGAACGGACAAGACTCCAACCAATCACCAATGCGT
AAACCGCATCATCATTTTGCCACTTCCGCTTCGGATAGCCTCGATGAAAA
GAGTATGAACCTGGAATCCGTGTTGGAGCATGGGGCGCAGCCACAATTCC
ACCAAGTACCTACGCTTAACGTGCGAGAAGGCGAATTCCACACACCTGTC
AGCGAGTCAGAAGGCGGATCTGAGCCTTCGTCGCGTGCTACGTCTCCCCG
CGTTGATGGGCGTCTATTTGCTGCCGTCGACAGCGCTTTTGTGCGTGATA
CGCATGGCAAACGTAGTCCGCTTCCGCAGAAGACACATCAAGGCGAACAA
CATGTTCCGCGCGCCCATGAAAGCCCCTCAACCGTGCAGCGACCTGCGTG
GACTATCCAGGAGACTGGTGATGACTCCACAAGCACTATATGCAAGTTGC
GTGACAAAGTCAATCCGCATGTCGTATCTCATGTGGAACAGATAAAGCTT
TTCGGAGCACTGCGCGAAGCGAACAAGGACGGTGACGGTGAATCGTACGA
GGAGCTTTCGAGACTTCGAATATCTGCCAGTCCTGGAAGATCTAAACCCA
GGCAGCATTCGGATGAAAGCAGCTCTTCTCGCTTTCCGCCTAGTAGAGCA
TCGGATGGTACTTACGACGATCACGATTCTCAGTCGGATATGCGCAGCAG
GCAGAACAAGAGCGGCAAGAGCTTTGGCAGCTCTTGCACGACGGAAGCTG
GAACTGAATTGGAGTCTACTGTGCTGTCGGAAGATAGTTGTCAGGTTGGT
TCGCGAACTACAACGCAAGACGCGTTGACTACGAATCAGAAGTTGAACGG
ATATCCACCAGCAGACGAACGGTATGAATATGAGGTCGATGAGCTTGCAG
CTGGCTATGACGTTTCACCGGACGCACCTGCTCCAGATGGCCACCTCAAT
GACGCATCATTAGAAGGTGGTGATGAGTGGTTGGCTGTTCATGATCCTGG
AAGCTCGAGGTTCTACTTTGCGCACAGATATACGCAGGAGAGCTTATGGC
TTCCTCCTGAATGGGAACGAATGGTTGATGAGGAAGGGCGACAGTACTTT
GTGGATCATGCTTCGCAAACAACTCAGTGGGCGTTTCCGGCTACTGAAGC
CCGTGCTTATCGAGAAAGCGTGTACGCAGGGTGA

protein sequence of Ggra1642.t1

>Ggra1642.t1 ID=Ggra1642.t1|Name=Ggra1642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=778bp
MAQTTEPPPPVSPLPSVSNPRAKNKKKVRMQVIPHDEPSKPVDTFHVTIS
NVRATLRVAEARPVILKFAFDNYWHAETDVFTRDSVNPSWRFNLNSVCGL
DGRKPATADGLAPQLAPDADPIQPSARFVYETEFGYKLHRKYLIVTLCER
SPYQDVVWGTGIVPLDSVARGCEALNMSIFAKDALKHYGNVFCNITMTNV
QRVRAHLTDLRLSEYPEIFSYDVKLIYIEFGLHAFDRGFHRSTEKRSDAE
PRFSAQPALEFDTTLRDMLISSTPNAPSLKIFFSVHRQVARNRTEQIGVG
ALPVRMLFSKVRDGWMGLPTKFRVPLAEYRGIIRGKVLLRNIPQFSQLPG
CDLTNVDGTIMPQHVDLDNRRLLPWVKLPKAEERRLRLANGQDSNQSPMR
KPHHHFATSASDSLDEKSMNLESVLEHGAQPQFHQVPTLNVREGEFHTPV
SESEGGSEPSSRATSPRVDGRLFAAVDSAFVRDTHGKRSPLPQKTHQGEQ
HVPRAHESPSTVQRPAWTIQETGDDSTSTICKLRDKVNPHVVSHVEQIKL
FGALREANKDGDGESYEELSRLRISASPGRSKPRQHSDESSSSRFPPSRA
SDGTYDDHDSQSDMRSRQNKSGKSFGSSCTTEAGTELESTVLSEDSCQVG
SRTTTQDALTTNQKLNGYPPADERYEYEVDELAAGYDVSPDAPAPDGHLN
DASLEGGDEWLAVHDPGSSRFYFAHRYTQESLWLPPEWERMVDEEGRQYF
VDHASQTTQWAFPATEARAYRESVYAG*

mRNA from alignment at tig00000050_pilon:239177..241510+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1642.t1 ID=Ggra1642.t1|Name=Ggra1642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2334bp|location=Sequence derived from alignment at tig00000050_pilon:239177..241510+ (Gracilaria gracilis GNS1m male)
ATGGCGCAGACTACCGAGCCGCCCCCGCCCGTGTCGCCTCTCCCGTCCGT
GTCCAATCCGCGCGCCAAGAATAAGAAGAAGGTGCGCATGCAAGTCATCC
CGCACGACGAGCCATCCAAACCAGTCGACACATTTCACGTCACCATCTCC
AACGTTCGCGCCACGCTGCGCGTCGCCGAGGCGCGTCCCGTCATCCTCAA
GTTCGCCTTTGATAACTATTGGCATGCCGAGACTGACGTTTTCACCCGCG
ATTCCGTCAACCCTTCGTGGCGCTTCAACCTCAACTCTGTGTGCGGCCTT
GATGGCCGCAAACCGGCCACCGCTGATGGCCTTGCGCCGCAGCTCGCGCC
CGACGCCGACCCTATCCAACCAAGCGCGCGCTTCGTTTACGAGACCGAGT
TTGGCTACAAGCTGCACCGCAAGTACTTAATTGTCACATTGTGCGAGCGC
AGTCCGTACCAAGATGTTGTGTGGGGCACCGGTATCGTGCCGCTTGACTC
CGTTGCGCGCGGATGTGAGGCGCTCAACATGTCCATCTTCGCCAAAGATG
CGCTCAAACACTACGGCAACGTCTTTTGTAACATCACTATGACCAATGTA
CAACGCGTGCGAGCACATCTTACCGACCTCAGACTGTCAGAGTATCCCGA
AATCTTTAGTTACGACGTCAAACTTATCTACATCGAGTTTGGTCTACATG
CGTTTGACCGCGGCTTTCATCGAAGCACGGAGAAACGATCTGATGCCGAG
CCTCGCTTTTCTGCACAACCTGCGCTTGAATTTGATACCACTTTGCGTGA
TATGCTTATTTCTTCTACCCCGAACGCTCCTTCGCTCAAGATCTTTTTCT
CCGTTCATCGTCAGGTTGCGCGAAACCGAACCGAGCAGATTGGAGTTGGA
GCGCTTCCCGTGCGCATGCTCTTCTCCAAGGTGCGCGACGGCTGGATGGG
GTTACCCACCAAGTTTAGGGTACCTCTTGCCGAGTATCGCGGCATCATTC
GCGGCAAGGTGTTGCTTCGCAATATTCCCCAGTTCTCGCAGCTGCCGGGA
TGTGATCTCACCAACGTTGACGGCACTATTATGCCTCAGCATGTCGATCT
CGATAATCGCAGACTGCTCCCATGGGTGAAGCTTCCCAAAGCGGAGGAGC
GTAGACTGCGCTTAGCGAACGGACAAGACTCCAACCAATCACCAATGCGT
AAACCGCATCATCATTTTGCCACTTCCGCTTCGGATAGCCTCGATGAAAA
GAGTATGAACCTGGAATCCGTGTTGGAGCATGGGGCGCAGCCACAATTCC
ACCAAGTACCTACGCTTAACGTGCGAGAAGGCGAATTCCACACACCTGTC
AGCGAGTCAGAAGGCGGATCTGAGCCTTCGTCGCGTGCTACGTCTCCCCG
CGTTGATGGGCGTCTATTTGCTGCCGTCGACAGCGCTTTTGTGCGTGATA
CGCATGGCAAACGTAGTCCGCTTCCGCAGAAGACACATCAAGGCGAACAA
CATGTTCCGCGCGCCCATGAAAGCCCCTCAACCGTGCAGCGACCTGCGTG
GACTATCCAGGAGACTGGTGATGACTCCACAAGCACTATATGCAAGTTGC
GTGACAAAGTCAATCCGCATGTCGTATCTCATGTGGAACAGATAAAGCTT
TTCGGAGCACTGCGCGAAGCGAACAAGGACGGTGACGGTGAATCGTACGA
GGAGCTTTCGAGACTTCGAATATCTGCCAGTCCTGGAAGATCTAAACCCA
GGCAGCATTCGGATGAAAGCAGCTCTTCTCGCTTTCCGCCTAGTAGAGCA
TCGGATGGTACTTACGACGATCACGATTCTCAGTCGGATATGCGCAGCAG
GCAGAACAAGAGCGGCAAGAGCTTTGGCAGCTCTTGCACGACGGAAGCTG
GAACTGAATTGGAGTCTACTGTGCTGTCGGAAGATAGTTGTCAGGTTGGT
TCGCGAACTACAACGCAAGACGCGTTGACTACGAATCAGAAGTTGAACGG
ATATCCACCAGCAGACGAACGGTATGAATATGAGGTCGATGAGCTTGCAG
CTGGCTATGACGTTTCACCGGACGCACCTGCTCCAGATGGCCACCTCAAT
GACGCATCATTAGAAGGTGGTGATGAGTGGTTGGCTGTTCATGATCCTGG
AAGCTCGAGGTTCTACTTTGCGCACAGATATACGCAGGAGAGCTTATGGC
TTCCTCCTGAATGGGAACGAATGGTTGATGAGGAAGGGCGACAGTACTTT
GTGGATCATGCTTCGCAAACAACTCAGTGGGCGTTTCCGGCTACTGAAGC
CCGTGCTTATCGAGAAAGCGTGTACGCAGGGTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:239177..241510+

>Ggra1642.t1 ID=Ggra1642.t1|Name=Ggra1642.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2334bp|location=Sequence derived from alignment at tig00000050_pilon:239177..241510+ (Gracilaria gracilis GNS1m male)
ATGGCGCAGACTACCGAGCCGCCCCCGCCCGTGTCGCCTCTCCCGTCCGT
GTCCAATCCGCGCGCCAAGAATAAGAAGAAGGTGCGCATGCAAGTCATCC
CGCACGACGAGCCATCCAAACCAGTCGACACATTTCACGTCACCATCTCC
AACGTTCGCGCCACGCTGCGCGTCGCCGAGGCGCGTCCCGTCATCCTCAA
GTTCGCCTTTGATAACTATTGGCATGCCGAGACTGACGTTTTCACCCGCG
ATTCCGTCAACCCTTCGTGGCGCTTCAACCTCAACTCTGTGTGCGGCCTT
GATGGCCGCAAACCGGCCACCGCTGATGGCCTTGCGCCGCAGCTCGCGCC
CGACGCCGACCCTATCCAACCAAGCGCGCGCTTCGTTTACGAGACCGAGT
TTGGCTACAAGCTGCACCGCAAGTACTTAATTGTCACATTGTGCGAGCGC
AGTCCGTACCAAGATGTTGTGTGGGGCACCGGTATCGTGCCGCTTGACTC
CGTTGCGCGCGGATGTGAGGCGCTCAACATGTCCATCTTCGCCAAAGATG
CGCTCAAACACTACGGCAACGTCTTTTGTAACATCACTATGACCAATGTA
CAACGCGTGCGAGCACATCTTACCGACCTCAGACTGTCAGAGTATCCCGA
AATCTTTAGTTACGACGTCAAACTTATCTACATCGAGTTTGGTCTACATG
CGTTTGACCGCGGCTTTCATCGAAGCACGGAGAAACGATCTGATGCCGAG
CCTCGCTTTTCTGCACAACCTGCGCTTGAATTTGATACCACTTTGCGTGA
TATGCTTATTTCTTCTACCCCGAACGCTCCTTCGCTCAAGATCTTTTTCT
CCGTTCATCGTCAGGTTGCGCGAAACCGAACCGAGCAGATTGGAGTTGGA
GCGCTTCCCGTGCGCATGCTCTTCTCCAAGGTGCGCGACGGCTGGATGGG
GTTACCCACCAAGTTTAGGGTACCTCTTGCCGAGTATCGCGGCATCATTC
GCGGCAAGGTGTTGCTTCGCAATATTCCCCAGTTCTCGCAGCTGCCGGGA
TGTGATCTCACCAACGTTGACGGCACTATTATGCCTCAGCATGTCGATCT
CGATAATCGCAGACTGCTCCCATGGGTGAAGCTTCCCAAAGCGGAGGAGC
GTAGACTGCGCTTAGCGAACGGACAAGACTCCAACCAATCACCAATGCGT
AAACCGCATCATCATTTTGCCACTTCCGCTTCGGATAGCCTCGATGAAAA
GAGTATGAACCTGGAATCCGTGTTGGAGCATGGGGCGCAGCCACAATTCC
ACCAAGTACCTACGCTTAACGTGCGAGAAGGCGAATTCCACACACCTGTC
AGCGAGTCAGAAGGCGGATCTGAGCCTTCGTCGCGTGCTACGTCTCCCCG
CGTTGATGGGCGTCTATTTGCTGCCGTCGACAGCGCTTTTGTGCGTGATA
CGCATGGCAAACGTAGTCCGCTTCCGCAGAAGACACATCAAGGCGAACAA
CATGTTCCGCGCGCCCATGAAAGCCCCTCAACCGTGCAGCGACCTGCGTG
GACTATCCAGGAGACTGGTGATGACTCCACAAGCACTATATGCAAGTTGC
GTGACAAAGTCAATCCGCATGTCGTATCTCATGTGGAACAGATAAAGCTT
TTCGGAGCACTGCGCGAAGCGAACAAGGACGGTGACGGTGAATCGTACGA
GGAGCTTTCGAGACTTCGAATATCTGCCAGTCCTGGAAGATCTAAACCCA
GGCAGCATTCGGATGAAAGCAGCTCTTCTCGCTTTCCGCCTAGTAGAGCA
TCGGATGGTACTTACGACGATCACGATTCTCAGTCGGATATGCGCAGCAG
GCAGAACAAGAGCGGCAAGAGCTTTGGCAGCTCTTGCACGACGGAAGCTG
GAACTGAATTGGAGTCTACTGTGCTGTCGGAAGATAGTTGTCAGGTTGGT
TCGCGAACTACAACGCAAGACGCGTTGACTACGAATCAGAAGTTGAACGG
ATATCCACCAGCAGACGAACGGTATGAATATGAGGTCGATGAGCTTGCAG
CTGGCTATGACGTTTCACCGGACGCACCTGCTCCAGATGGCCACCTCAAT
GACGCATCATTAGAAGGTGGTGATGAGTGGTTGGCTGTTCATGATCCTGG
AAGCTCGAGGTTCTACTTTGCGCACAGATATACGCAGGAGAGCTTATGGC
TTCCTCCTGAATGGGAACGAATGGTTGATGAGGAAGGGCGACAGTACTTT
GTGGATCATGCTTCGCAAACAACTCAGTGGGCGTTTCCGGCTACTGAAGC
CCGTGCTTATCGAGAAAGCGTGTACGCAGGGTGA