Ggra1637.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1637.t1
Unique NameGgra1637.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:126080..126721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.J14895.1.p
PFAMsDUF3119
Max annot lvl35493|Streptophyta
Evalue8.15e-18
EggNOG OGs2CPJ9@1|root,2R1VP@2759|Eukaryota,37KDW@33090|Viridiplantae,3G7WR@35493|Streptophyta,3KVVV@4447|Liliopsida,3I4SN@38820|Poales
DescriptionProtein of unknown function (DUF3119)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1637Ggra1637Gracilaria gracilis GNS1m malegenetig00000050_pilon 126080..126721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1637.t1.stop1Ggra1637.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 126080..126082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1637.t1.CDS1Ggra1637.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 126080..126721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1637.t1.exon1Ggra1637.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 126080..126721 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1637.t1.start1Ggra1637.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 126719..126721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1637.t1Ggra1637.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 126080..126721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1637.t1 ID=Ggra1637.t1|Name=Ggra1637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MRNAAFASTIALRQISFSQSFISCRRKRFNPVRSHVHQRSTIIASSPTEP
PSAPETPAEQTETTLILESEALDPSSGSVVVPATFNLAGAFVFSGGLCVY
LGDGWLVAGLPLLFLGLFLSLQTFRIRFIFGPTRLSVAQKTGEGLKLIRG
WQYETITNWEMWWKRVPILVYFKESESYNGRGSIHFFPILYKGDVLLTEL
RKRTPHLDKKQYD*
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spliced messenger RNA

>Ggra1637.t1 ID=Ggra1637.t1|Name=Ggra1637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000050_pilon:126080..126721- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAATGCCGCATTCGCTTCCACCATAGCTTTGCGACAGATATCGTT
CTCTCAAAGCTTCATCTCATGCCGAAGAAAGCGCTTCAACCCAGTGAGAT
CCCATGTTCACCAGCGATCGACAATCATTGCCAGCTCGCCCACTGAACCT
CCATCCGCTCCTGAGACGCCCGCAGAACAGACAGAAACAACCCTCATTCT
TGAATCGGAAGCACTGGACCCATCGAGTGGCTCCGTTGTAGTGCCAGCCA
CTTTCAACCTTGCAGGAGCTTTTGTGTTTTCCGGCGGACTGTGTGTTTAT
CTTGGTGATGGATGGCTGGTGGCGGGATTGCCATTACTGTTCCTTGGACT
TTTTCTTTCCTTGCAGACTTTTCGAATTCGGTTCATATTCGGACCGACTC
GTCTCAGCGTTGCACAGAAAACTGGTGAAGGGCTGAAGCTAATCAGGGGC
TGGCAGTATGAAACGATAACCAACTGGGAGATGTGGTGGAAGCGAGTACC
TATACTTGTGTACTTTAAGGAAAGCGAGAGTTACAATGGACGTGGGAGTA
TTCATTTTTTCCCCATTCTCTACAAGGGTGATGTTTTGTTGACTGAGCTG
AGAAAGCGCACTCCGCACCTTGATAAGAAGCAATATGATTGA
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protein sequence of Ggra1637.t1

>Ggra1637.t1 ID=Ggra1637.t1|Name=Ggra1637.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MRNAAFASTIALRQISFSQSFISCRRKRFNPVRSHVHQRSTIIASSPTEP
PSAPETPAEQTETTLILESEALDPSSGSVVVPATFNLAGAFVFSGGLCVY
LGDGWLVAGLPLLFLGLFLSLQTFRIRFIFGPTRLSVAQKTGEGLKLIRG
WQYETITNWEMWWKRVPILVYFKESESYNGRGSIHFFPILYKGDVLLTEL
RKRTPHLDKKQYD*
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mRNA from alignment at tig00000050_pilon:126080..126721-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1637.t1 ID=Ggra1637.t1|Name=Ggra1637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000050_pilon:126080..126721- (Gracilaria gracilis GNS1m male)
ATGAGGAATGCCGCATTCGCTTCCACCATAGCTTTGCGACAGATATCGTT
CTCTCAAAGCTTCATCTCATGCCGAAGAAAGCGCTTCAACCCAGTGAGAT
CCCATGTTCACCAGCGATCGACAATCATTGCCAGCTCGCCCACTGAACCT
CCATCCGCTCCTGAGACGCCCGCAGAACAGACAGAAACAACCCTCATTCT
TGAATCGGAAGCACTGGACCCATCGAGTGGCTCCGTTGTAGTGCCAGCCA
CTTTCAACCTTGCAGGAGCTTTTGTGTTTTCCGGCGGACTGTGTGTTTAT
CTTGGTGATGGATGGCTGGTGGCGGGATTGCCATTACTGTTCCTTGGACT
TTTTCTTTCCTTGCAGACTTTTCGAATTCGGTTCATATTCGGACCGACTC
GTCTCAGCGTTGCACAGAAAACTGGTGAAGGGCTGAAGCTAATCAGGGGC
TGGCAGTATGAAACGATAACCAACTGGGAGATGTGGTGGAAGCGAGTACC
TATACTTGTGTACTTTAAGGAAAGCGAGAGTTACAATGGACGTGGGAGTA
TTCATTTTTTCCCCATTCTCTACAAGGGTGATGTTTTGTTGACTGAGCTG
AGAAAGCGCACTCCGCACCTTGATAAGAAGCAATATGATTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:126080..126721-

>Ggra1637.t1 ID=Ggra1637.t1|Name=Ggra1637.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000050_pilon:126080..126721- (Gracilaria gracilis GNS1m male)
ATGAGGAATGCCGCATTCGCTTCCACCATAGCTTTGCGACAGATATCGTT
CTCTCAAAGCTTCATCTCATGCCGAAGAAAGCGCTTCAACCCAGTGAGAT
CCCATGTTCACCAGCGATCGACAATCATTGCCAGCTCGCCCACTGAACCT
CCATCCGCTCCTGAGACGCCCGCAGAACAGACAGAAACAACCCTCATTCT
TGAATCGGAAGCACTGGACCCATCGAGTGGCTCCGTTGTAGTGCCAGCCA
CTTTCAACCTTGCAGGAGCTTTTGTGTTTTCCGGCGGACTGTGTGTTTAT
CTTGGTGATGGATGGCTGGTGGCGGGATTGCCATTACTGTTCCTTGGACT
TTTTCTTTCCTTGCAGACTTTTCGAATTCGGTTCATATTCGGACCGACTC
GTCTCAGCGTTGCACAGAAAACTGGTGAAGGGCTGAAGCTAATCAGGGGC
TGGCAGTATGAAACGATAACCAACTGGGAGATGTGGTGGAAGCGAGTACC
TATACTTGTGTACTTTAAGGAAAGCGAGAGTTACAATGGACGTGGGAGTA
TTCATTTTTTCCCCATTCTCTACAAGGGTGATGTTTTGTTGACTGAGCTG
AGAAAGCGCACTCCGCACCTTGATAAGAAGCAATATGATTGA
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