Ggra1634.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1634.t1
Unique Name	Ggra1634.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	357

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:120032..121102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002501984.1
PFAMs	Pro_isomerase
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03768
Evalue	3.9e-12
EggNOG OGs	COG0652@1\|root,KOG0865@2759\|Eukaryota,37K8J@33090\|Viridiplantae,34HX3@3041\|Chlorophyta
EC	5.2.1.8
Description	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG category	O
BRITE	ko00000,ko01000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1634	Ggra1634	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 120032..121102 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1634.t1.start1	Ggra1634.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 120032..120034 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1634.t1.CDS1	Ggra1634.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 120032..121102 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1634.t1.exon1	Ggra1634.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 120032..121102 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1634.t1.stop1	Ggra1634.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 121100..121102 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1634.t1	Ggra1634.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 120032..121102 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:120032..121102+
coding sequence from alignment at tig00000050_pilon:120032..121102+

mRNA sequence

>Ggra1634.t1 ID=Ggra1634.t1|Name=Ggra1634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MPKVLRLPHEFSQGLLGARSASLRRQGFRSVSGPEAKTARQSTTYIAPDM
TPPTPPPPRISQTALFLVFLVLLGIAGFAIPGGLAPRRETEEILSRRVAE
RLEVFSESDPHQRIDGPFHIDEIHRKGLVHHGVWMFALDSHLRLLLAWRS
PSTMTCPMTWTPIGEHSVTNETFEETTNRGLAEEARFIIRPRVYAIGQPF
FFHYVYANGTREQRIDKQWTQAYVILPRGDALDFRSLDDIDAQATQSYGE
NLRYQGMSIPEVVRHGVQKPDYFCNKVLVKWILRTIPLVIRVLKTKEKRL
FRAHLKEQWGSLVQSGSPVCCRSSEHELDVESVDVSACGIPCEKHTIDVS
DEEAFT*

spliced messenger RNA

>Ggra1634.t1 ID=Ggra1634.t1|Name=Ggra1634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000050_pilon:120032..121102+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAGGTATTGCGTCTTCCGCACGAATTTTCTCAAGGCCTACTTGG
TGCAAGGTCTGCCAGCCTTCGAAGGCAAGGATTTCGATCTGTCTCGGGCC
CTGAAGCAAAGACCGCGCGGCAGTCGACTACTTACATTGCCCCGGACATG
ACACCACCAACTCCACCACCGCCGCGAATTTCGCAGACCGCGCTATTTCT
CGTATTCCTCGTGCTACTCGGTATAGCTGGCTTTGCAATTCCAGGAGGTT
TGGCTCCTCGCCGCGAGACAGAGGAGATTCTATCAAGAAGAGTTGCAGAG
AGGTTGGAAGTGTTTTCAGAGAGCGACCCACACCAACGAATTGACGGTCC
GTTCCACATTGATGAGATTCATCGAAAGGGTCTTGTACATCATGGTGTGT
GGATGTTTGCTCTGGATTCACATCTCAGGCTGTTGCTTGCTTGGCGTTCT
CCGTCCACAATGACCTGCCCGATGACGTGGACGCCAATTGGCGAGCATTC
CGTTACTAATGAAACGTTTGAAGAAACAACAAACAGAGGCTTGGCTGAAG
AAGCTCGTTTTATTATCAGACCCAGAGTGTATGCTATTGGACAACCCTTT
TTCTTTCACTACGTCTACGCGAATGGCACCCGTGAGCAACGTATTGACAA
GCAATGGACACAAGCGTACGTGATCCTTCCTCGCGGCGACGCCTTGGACT
TTAGATCATTGGATGACATTGATGCGCAAGCCACCCAGTCCTACGGTGAA
AACCTCCGATATCAAGGAATGTCAATTCCAGAAGTCGTACGCCACGGTGT
GCAGAAGCCAGACTACTTCTGCAACAAAGTATTAGTGAAATGGATACTAC
GAACAATACCCCTGGTAATCCGAGTTCTCAAAACAAAGGAAAAACGTCTG
TTCCGAGCGCACTTGAAAGAACAATGGGGCTCCCTTGTGCAATCCGGCTC
TCCAGTTTGTTGTCGCTCTTCAGAGCACGAACTCGATGTCGAATCCGTTG
ATGTATCAGCCTGCGGAATTCCGTGCGAAAAGCATACCATCGATGTATCC
GACGAAGAAGCTTTCACCTGA

protein sequence of Ggra1634.t1

>Ggra1634.t1 ID=Ggra1634.t1|Name=Ggra1634.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MPKVLRLPHEFSQGLLGARSASLRRQGFRSVSGPEAKTARQSTTYIAPDM
TPPTPPPPRISQTALFLVFLVLLGIAGFAIPGGLAPRRETEEILSRRVAE
RLEVFSESDPHQRIDGPFHIDEIHRKGLVHHGVWMFALDSHLRLLLAWRS
PSTMTCPMTWTPIGEHSVTNETFEETTNRGLAEEARFIIRPRVYAIGQPF
FFHYVYANGTREQRIDKQWTQAYVILPRGDALDFRSLDDIDAQATQSYGE
NLRYQGMSIPEVVRHGVQKPDYFCNKVLVKWILRTIPLVIRVLKTKEKRL
FRAHLKEQWGSLVQSGSPVCCRSSEHELDVESVDVSACGIPCEKHTIDVS
DEEAFT*

mRNA from alignment at tig00000050_pilon:120032..121102+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1634.t1 ID=Ggra1634.t1|Name=Ggra1634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000050_pilon:120032..121102+ (Gracilaria gracilis GNS1m male)
ATGCCGAAGGTATTGCGTCTTCCGCACGAATTTTCTCAAGGCCTACTTGG
TGCAAGGTCTGCCAGCCTTCGAAGGCAAGGATTTCGATCTGTCTCGGGCC
CTGAAGCAAAGACCGCGCGGCAGTCGACTACTTACATTGCCCCGGACATG
ACACCACCAACTCCACCACCGCCGCGAATTTCGCAGACCGCGCTATTTCT
CGTATTCCTCGTGCTACTCGGTATAGCTGGCTTTGCAATTCCAGGAGGTT
TGGCTCCTCGCCGCGAGACAGAGGAGATTCTATCAAGAAGAGTTGCAGAG
AGGTTGGAAGTGTTTTCAGAGAGCGACCCACACCAACGAATTGACGGTCC
GTTCCACATTGATGAGATTCATCGAAAGGGTCTTGTACATCATGGTGTGT
GGATGTTTGCTCTGGATTCACATCTCAGGCTGTTGCTTGCTTGGCGTTCT
CCGTCCACAATGACCTGCCCGATGACGTGGACGCCAATTGGCGAGCATTC
CGTTACTAATGAAACGTTTGAAGAAACAACAAACAGAGGCTTGGCTGAAG
AAGCTCGTTTTATTATCAGACCCAGAGTGTATGCTATTGGACAACCCTTT
TTCTTTCACTACGTCTACGCGAATGGCACCCGTGAGCAACGTATTGACAA
GCAATGGACACAAGCGTACGTGATCCTTCCTCGCGGCGACGCCTTGGACT
TTAGATCATTGGATGACATTGATGCGCAAGCCACCCAGTCCTACGGTGAA
AACCTCCGATATCAAGGAATGTCAATTCCAGAAGTCGTACGCCACGGTGT
GCAGAAGCCAGACTACTTCTGCAACAAAGTATTAGTGAAATGGATACTAC
GAACAATACCCCTGGTAATCCGAGTTCTCAAAACAAAGGAAAAACGTCTG
TTCCGAGCGCACTTGAAAGAACAATGGGGCTCCCTTGTGCAATCCGGCTC
TCCAGTTTGTTGTCGCTCTTCAGAGCACGAACTCGATGTCGAATCCGTTG
ATGTATCAGCCTGCGGAATTCCGTGCGAAAAGCATACCATCGATGTATCC
GACGAAGAAGCTTTCACCTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:120032..121102+

>Ggra1634.t1 ID=Ggra1634.t1|Name=Ggra1634.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000050_pilon:120032..121102+ (Gracilaria gracilis GNS1m male)
ATGCCGAAGGTATTGCGTCTTCCGCACGAATTTTCTCAAGGCCTACTTGG
TGCAAGGTCTGCCAGCCTTCGAAGGCAAGGATTTCGATCTGTCTCGGGCC
CTGAAGCAAAGACCGCGCGGCAGTCGACTACTTACATTGCCCCGGACATG
ACACCACCAACTCCACCACCGCCGCGAATTTCGCAGACCGCGCTATTTCT
CGTATTCCTCGTGCTACTCGGTATAGCTGGCTTTGCAATTCCAGGAGGTT
TGGCTCCTCGCCGCGAGACAGAGGAGATTCTATCAAGAAGAGTTGCAGAG
AGGTTGGAAGTGTTTTCAGAGAGCGACCCACACCAACGAATTGACGGTCC
GTTCCACATTGATGAGATTCATCGAAAGGGTCTTGTACATCATGGTGTGT
GGATGTTTGCTCTGGATTCACATCTCAGGCTGTTGCTTGCTTGGCGTTCT
CCGTCCACAATGACCTGCCCGATGACGTGGACGCCAATTGGCGAGCATTC
CGTTACTAATGAAACGTTTGAAGAAACAACAAACAGAGGCTTGGCTGAAG
AAGCTCGTTTTATTATCAGACCCAGAGTGTATGCTATTGGACAACCCTTT
TTCTTTCACTACGTCTACGCGAATGGCACCCGTGAGCAACGTATTGACAA
GCAATGGACACAAGCGTACGTGATCCTTCCTCGCGGCGACGCCTTGGACT
TTAGATCATTGGATGACATTGATGCGCAAGCCACCCAGTCCTACGGTGAA
AACCTCCGATATCAAGGAATGTCAATTCCAGAAGTCGTACGCCACGGTGT
GCAGAAGCCAGACTACTTCTGCAACAAAGTATTAGTGAAATGGATACTAC
GAACAATACCCCTGGTAATCCGAGTTCTCAAAACAAAGGAAAAACGTCTG
TTCCGAGCGCACTTGAAAGAACAATGGGGCTCCCTTGTGCAATCCGGCTC
TCCAGTTTGTTGTCGCTCTTCAGAGCACGAACTCGATGTCGAATCCGTTG
ATGTATCAGCCTGCGGAATTCCGTGCGAAAAGCATACCATCGATGTATCC
GACGAAGAAGCTTTCACCTGA