Ggra1631.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1631.t1
Unique NameGgra1631.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:109642..110496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog632335.Calkr_0278
PFAMsSRAP
Max annot lvl186801|Clostridia
Evalue8.13e-12
EggNOG OGsCOG2135@1|root,COG2135@2|Bacteria,1TRRV@1239|Firmicutes,24GD7@186801|Clostridia,42H4Q@68295|Thermoanaerobacterales
DescriptionBelongs to the SOS response-associated peptidase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1631Ggra1631Gracilaria gracilis GNS1m malegenetig00000050_pilon 109642..110496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1631.t1Ggra1631.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 109642..110496 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1631.t1.stop1Ggra1631.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 109642..109644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1631.t1.CDS1Ggra1631.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 109642..110235 -
Ggra1631.t1.CDS2Ggra1631.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 110386..110496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1631.t1.exon1Ggra1631.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 109642..110235 -
Ggra1631.t1.exon2Ggra1631.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 110386..110496 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1631.t1.intron1Ggra1631.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 110236..110385 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1631.t1.start1Ggra1631.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 110494..110496 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1631.t1 ID=Ggra1631.t1|Name=Ggra1631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MCGRYQLAVEATALSASHRNAKWVVSNAGQQHKPRQQMSRRCAIPTTGFF
EWQKDIGPGKSSKTPFLVRSFEDAKFEDAALSYMAGLYRRERQSDTFVVL
TENAAPELEWLHNRQPVFLRDEQQVQTWLRHDTPPSRAVGFLNDSTGFSW
WRMKSDLSDKFRGKVLKQKGLDAFFGAKGKGGKNADLKVKSPLQKPNKKS
LKRKELSKESHPSPSKKLLKRDGLEKGLKNDLSA*
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spliced messenger RNA

>Ggra1631.t1 ID=Ggra1631.t1|Name=Ggra1631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000050_pilon:109642..110496- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGCCGGTATCAACTCGCCGTCGAGGCAACAGCTCTTTCAGCGTC
GCACCGAAACGCAAAATGGGTCGTTTCTAACGCCGGACAACAGCACAAGC
CTCGTCAACAAATGAGCCGTCGATGTGCGATTCCAACGACCGGTTTCTTC
GAATGGCAGAAGGATATTGGGCCGGGAAAGAGTTCGAAAACTCCTTTTTT
GGTTCGAAGTTTTGAAGACGCCAAGTTCGAAGATGCTGCGCTTTCGTACA
TGGCTGGGCTTTATCGGAGAGAGCGGCAGAGTGATACGTTTGTTGTTCTC
ACCGAAAATGCAGCCCCGGAACTTGAATGGCTTCACAACAGGCAGCCAGT
GTTCCTTAGAGATGAGCAACAAGTTCAAACCTGGTTACGCCATGACACGC
CCCCGTCAAGGGCTGTTGGATTCCTTAATGATAGTACAGGCTTCAGTTGG
TGGCGAATGAAATCAGACCTTTCAGACAAGTTTAGGGGGAAAGTTTTGAA
GCAGAAAGGATTGGATGCCTTCTTTGGCGCCAAAGGAAAGGGGGGGAAAA
ATGCTGATCTCAAGGTCAAGTCTCCACTCCAAAAGCCGAACAAGAAGTCT
TTGAAGAGAAAAGAATTATCAAAAGAGTCTCATCCCTCACCATCAAAGAA
GCTTTTGAAGCGCGATGGGCTGGAGAAGGGCCTCAAGAACGATCTGTCTG
CTTAA
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protein sequence of Ggra1631.t1

>Ggra1631.t1 ID=Ggra1631.t1|Name=Ggra1631.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MCGRYQLAVEATALSASHRNAKWVVSNAGQQHKPRQQMSRRCAIPTTGFF
EWQKDIGPGKSSKTPFLVRSFEDAKFEDAALSYMAGLYRRERQSDTFVVL
TENAAPELEWLHNRQPVFLRDEQQVQTWLRHDTPPSRAVGFLNDSTGFSW
WRMKSDLSDKFRGKVLKQKGLDAFFGAKGKGGKNADLKVKSPLQKPNKKS
LKRKELSKESHPSPSKKLLKRDGLEKGLKNDLSA*
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mRNA from alignment at tig00000050_pilon:109642..110496-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1631.t1 ID=Ggra1631.t1|Name=Ggra1631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000050_pilon:109642..110496- (Gracilaria gracilis GNS1m male)
ATGTGCGGCCGGTATCAACTCGCCGTCGAGGCAACAGCTCTTTCAGCGTC
GCACCGAAACGCAAAATGGGTCGTTTCTAACGCCGGACAACAGCACAAGC
CTCGTCAACAAGTGCGTCCCACCACGCAGGCCCCCGTTCTTCTTTACGAA
GGCTCATCCCCCACGTTCCATCTCATGAAATGGGGGTTTTCACTCGGAAG
CTCTCCCCTCATTAACGCGCGAAAAGAAACTGTTTTACAACTGCCTACAT
TTCGAGCGCAGATGAGCCGTCGATGTGCGATTCCAACGACCGGTTTCTTC
GAATGGCAGAAGGATATTGGGCCGGGAAAGAGTTCGAAAACTCCTTTTTT
GGTTCGAAGTTTTGAAGACGCCAAGTTCGAAGATGCTGCGCTTTCGTACA
TGGCTGGGCTTTATCGGAGAGAGCGGCAGAGTGATACGTTTGTTGTTCTC
ACCGAAAATGCAGCCCCGGAACTTGAATGGCTTCACAACAGGCAGCCAGT
GTTCCTTAGAGATGAGCAACAAGTTCAAACCTGGTTACGCCATGACACGC
CCCCGTCAAGGGCTGTTGGATTCCTTAATGATAGTACAGGCTTCAGTTGG
TGGCGAATGAAATCAGACCTTTCAGACAAGTTTAGGGGGAAAGTTTTGAA
GCAGAAAGGATTGGATGCCTTCTTTGGCGCCAAAGGAAAGGGGGGGAAAA
ATGCTGATCTCAAGGTCAAGTCTCCACTCCAAAAGCCGAACAAGAAGTCT
TTGAAGAGAAAAGAATTATCAAAAGAGTCTCATCCCTCACCATCAAAGAA
GCTTTTGAAGCGCGATGGGCTGGAGAAGGGCCTCAAGAACGATCTGTCTG
CTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:109642..110496-

>Ggra1631.t1 ID=Ggra1631.t1|Name=Ggra1631.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000050_pilon:109642..110496- (Gracilaria gracilis GNS1m male)
ATGTGCGGCCGGTATCAACTCGCCGTCGAGGCAACAGCTCTTTCAGCGTC
GCACCGAAACGCAAAATGGGTCGTTTCTAACGCCGGACAACAGCACAAGC
CTCGTCAACAAATGAGCCGTCGATGTGCGATTCCAACGACCGGTTTCTTC
GAATGGCAGAAGGATATTGGGCCGGGAAAGAGTTCGAAAACTCCTTTTTT
GGTTCGAAGTTTTGAAGACGCCAAGTTCGAAGATGCTGCGCTTTCGTACA
TGGCTGGGCTTTATCGGAGAGAGCGGCAGAGTGATACGTTTGTTGTTCTC
ACCGAAAATGCAGCCCCGGAACTTGAATGGCTTCACAACAGGCAGCCAGT
GTTCCTTAGAGATGAGCAACAAGTTCAAACCTGGTTACGCCATGACACGC
CCCCGTCAAGGGCTGTTGGATTCCTTAATGATAGTACAGGCTTCAGTTGG
TGGCGAATGAAATCAGACCTTTCAGACAAGTTTAGGGGGAAAGTTTTGAA
GCAGAAAGGATTGGATGCCTTCTTTGGCGCCAAAGGAAAGGGGGGGAAAA
ATGCTGATCTCAAGGTCAAGTCTCCACTCCAAAAGCCGAACAAGAAGTCT
TTGAAGAGAAAAGAATTATCAAAAGAGTCTCATCCCTCACCATCAAAGAA
GCTTTTGAAGCGCGATGGGCTGGAGAAGGGCCTCAAGAACGATCTGTCTG
CTTAA
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