Ggra1606.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1606.t1
Unique NameGgra1606.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:35653..36231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391625.PPSIR1_15505
PFAMsMethyltransf_11,Methyltransf_12,Methyltransf_23,Methyltransf_25
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC00460
KEGG koko:K02169
KEGG ReactionR09543
KEGG Pathwayko00780,ko01100,map00780,map01100
KEGG ModuleM00572
Evalue3.51e-47
EggNOG OGsCOG4106@1|root,COG4106@2|Bacteria
EC2.1.1.197
Descriptiontrans-aconitate 2-methyltransferase activity
COG categoryFG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1606Ggra1606Gracilaria gracilis GNS1m malegenetig00000146_pilon 35653..36231 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1606.t1.stop1Ggra1606.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 35653..35655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1606.t1.CDS1Ggra1606.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 35653..36231 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1606.t1.exon1Ggra1606.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 35653..36231 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1606.t1.start1Ggra1606.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 36229..36231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1606.t1Ggra1606.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 35653..36231 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1606.t1 ID=Ggra1606.t1|Name=Ggra1606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=193bp
MEFYNAKENVDWYESMVKDYDASPMLTRFSAHVEAGARVLELGVGPGLDH
DALRASYRMAGVDISDEFVRRYRARHAPGDVDVRVADAVTLAPFEAAQFD
AVFSNKVLHHLSEEDLVRSLSRQAVLLRAGGVLFHTLWRGDKEEFIHGMR
FRYYTPQRFEALLPAPLQLRCCETYKEMETDDSFVAVVHKPP*
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spliced messenger RNA

>Ggra1606.t1 ID=Ggra1606.t1|Name=Ggra1606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000146_pilon:35653..36231- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCTACAACGCCAAGGAGAACGTGGACTGGTACGAGAGCATGGT
GAAGGACTACGACGCGTCGCCCATGCTGACGCGCTTCAGCGCGCACGTCG
AAGCCGGCGCGCGCGTGCTGGAGCTGGGCGTGGGCCCCGGGCTGGACCAC
GACGCGCTACGCGCGTCGTACCGCATGGCGGGCGTCGACATCTCCGACGA
GTTTGTGCGCCGCTACCGCGCGCGCCACGCGCCCGGCGACGTCGACGTGC
GCGTGGCGGACGCCGTAACGCTGGCGCCGTTCGAAGCCGCGCAGTTCGAC
GCCGTGTTCTCCAACAAGGTGCTGCACCACCTCAGCGAGGAAGACCTGGT
GCGCTCGCTGAGCCGTCAGGCGGTGCTGCTGCGCGCCGGCGGCGTGCTGT
TTCACACGCTGTGGCGCGGCGATAAGGAGGAGTTCATCCACGGGATGCGC
TTCCGGTACTACACGCCGCAGCGCTTCGAGGCGCTGCTGCCGGCGCCGCT
GCAGCTCCGCTGCTGTGAAACGTACAAGGAGATGGAGACAGACGATTCGT
TCGTCGCCGTGGTGCACAAGCCGCCGTGA
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protein sequence of Ggra1606.t1

>Ggra1606.t1 ID=Ggra1606.t1|Name=Ggra1606.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MEFYNAKENVDWYESMVKDYDASPMLTRFSAHVEAGARVLELGVGPGLDH
DALRASYRMAGVDISDEFVRRYRARHAPGDVDVRVADAVTLAPFEAAQFD
AVFSNKVLHHLSEEDLVRSLSRQAVLLRAGGVLFHTLWRGDKEEFIHGMR
FRYYTPQRFEALLPAPLQLRCCETYKEMETDDSFVAVVHKPP*
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mRNA from alignment at tig00000146_pilon:35653..36231-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1606.t1 ID=Ggra1606.t1|Name=Ggra1606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000146_pilon:35653..36231- (Gracilaria gracilis GNS1m male)
ATGGAGTTCTACAACGCCAAGGAGAACGTGGACTGGTACGAGAGCATGGT
GAAGGACTACGACGCGTCGCCCATGCTGACGCGCTTCAGCGCGCACGTCG
AAGCCGGCGCGCGCGTGCTGGAGCTGGGCGTGGGCCCCGGGCTGGACCAC
GACGCGCTACGCGCGTCGTACCGCATGGCGGGCGTCGACATCTCCGACGA
GTTTGTGCGCCGCTACCGCGCGCGCCACGCGCCCGGCGACGTCGACGTGC
GCGTGGCGGACGCCGTAACGCTGGCGCCGTTCGAAGCCGCGCAGTTCGAC
GCCGTGTTCTCCAACAAGGTGCTGCACCACCTCAGCGAGGAAGACCTGGT
GCGCTCGCTGAGCCGTCAGGCGGTGCTGCTGCGCGCCGGCGGCGTGCTGT
TTCACACGCTGTGGCGCGGCGATAAGGAGGAGTTCATCCACGGGATGCGC
TTCCGGTACTACACGCCGCAGCGCTTCGAGGCGCTGCTGCCGGCGCCGCT
GCAGCTCCGCTGCTGTGAAACGTACAAGGAGATGGAGACAGACGATTCGT
TCGTCGCCGTGGTGCACAAGCCGCCGTGA
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Coding sequence (CDS) from alignment at tig00000146_pilon:35653..36231-

>Ggra1606.t1 ID=Ggra1606.t1|Name=Ggra1606.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00000146_pilon:35653..36231- (Gracilaria gracilis GNS1m male)
ATGGAGTTCTACAACGCCAAGGAGAACGTGGACTGGTACGAGAGCATGGT
GAAGGACTACGACGCGTCGCCCATGCTGACGCGCTTCAGCGCGCACGTCG
AAGCCGGCGCGCGCGTGCTGGAGCTGGGCGTGGGCCCCGGGCTGGACCAC
GACGCGCTACGCGCGTCGTACCGCATGGCGGGCGTCGACATCTCCGACGA
GTTTGTGCGCCGCTACCGCGCGCGCCACGCGCCCGGCGACGTCGACGTGC
GCGTGGCGGACGCCGTAACGCTGGCGCCGTTCGAAGCCGCGCAGTTCGAC
GCCGTGTTCTCCAACAAGGTGCTGCACCACCTCAGCGAGGAAGACCTGGT
GCGCTCGCTGAGCCGTCAGGCGGTGCTGCTGCGCGCCGGCGGCGTGCTGT
TTCACACGCTGTGGCGCGGCGATAAGGAGGAGTTCATCCACGGGATGCGC
TTCCGGTACTACACGCCGCAGCGCTTCGAGGCGCTGCTGCCGGCGCCGCT
GCAGCTCCGCTGCTGTGAAACGTACAAGGAGATGGAGACAGACGATTCGT
TCGTCGCCGTGGTGCACAAGCCGCCGTGA
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