Ggra1605.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1605.t1
Unique NameGgra1605.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:33708..35051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES81181
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K00924
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009931,GO:0009987,GO:0010033,GO:0010857,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0032870,GO:0033993,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071944,GO:0097305,GO:0097306,GO:0140096,GO:1901564,GO:1901700,GO:1901701
Evalue3.48e-20
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,37R9X@33090|Viridiplantae,3GG32@35493|Streptophyta,4JGXT@91835|fabids
DescriptionCDPK-related kinase
COG categoryT
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1605Ggra1605Gracilaria gracilis GNS1m malegenetig00000146_pilon 33708..35051 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1605.t1.start1Ggra1605.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 33708..33710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1605.t1.CDS1Ggra1605.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 33708..35051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1605.t1.exon1Ggra1605.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 33708..35051 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1605.t1.stop1Ggra1605.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 35049..35051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1605.t1Ggra1605.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 33708..35051 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1605.t1 ID=Ggra1605.t1|Name=Ggra1605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=448bp
MIYPTVVEKNAQMYDCIGWVRVRESFFSRGKTWYMRLHGSTLTLHKSIDT
SMVLEYSVVGCEVKTGLFPRCFTLKLPERKKLRVSCDFPSEAETWKQSLS
KASSTIFQDEFELLEEVEDMGGCTLFSAVQKSDNSKVSVRRIAVDEEQHL
DLKTAKSLHRQLYAVRQLYHYTLMGATRVFSEVGYAYMVGKTVGGKRLTQ
VLSEHGGTLPESMARIITIQLVQALQFMHSKGFVHRKVALESLRFDGSDP
SDPRVVLGNFEAVAFVDDDEDLRMRGQVGNALYQAPEMVRGASYSASVDM
YALGVCVYRMLSGSFPVQGSGLGRDGVEEAAFDGERWNNISAEAKSFVKA
LLKPCYLSRLTAKAAEDDGWFRIHLIDVEEQWSLTGCADAASEAAASERS
VGYVEEAGESVAVVHRMSNAKAHVTPLMRLLSPVTAEAPQSLRSVVG*
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spliced messenger RNA

>Ggra1605.t1 ID=Ggra1605.t1|Name=Ggra1605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000146_pilon:33708..35051+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTATCCGACGGTGGTCGAGAAGAACGCGCAGATGTATGACTGCAT
CGGATGGGTCCGAGTGCGCGAATCGTTCTTTTCGCGTGGCAAGACTTGGT
ACATGCGGTTGCATGGTTCAACTCTAACCCTGCACAAGTCAATTGACACG
AGCATGGTGTTGGAGTATTCAGTGGTTGGGTGCGAGGTGAAGACCGGCCT
CTTTCCCCGGTGCTTTACCCTTAAGCTTCCCGAGAGAAAGAAACTTCGGG
TGTCTTGTGATTTCCCGAGCGAAGCAGAAACTTGGAAGCAGTCGCTATCA
AAGGCTTCCAGTACAATCTTCCAGGATGAGTTCGAACTGCTCGAGGAAGT
GGAAGACATGGGCGGATGCACGTTGTTCAGCGCCGTTCAAAAGTCTGACA
ACTCCAAAGTGTCAGTACGGCGCATAGCGGTGGATGAAGAGCAGCACTTG
GATTTAAAGACAGCTAAGTCACTCCACCGCCAGCTGTATGCCGTCCGCCA
GCTATATCACTACACCTTGATGGGCGCCACAAGAGTGTTCAGTGAGGTGG
GTTATGCGTACATGGTGGGCAAAACCGTAGGTGGGAAACGGCTCACGCAA
GTGCTTTCCGAGCATGGCGGTACGCTGCCGGAAAGTATGGCGCGGATCAT
CACGatccaactggtgcaggcgctgcagttcatgcacagcaaggggtttg
tgcaccgcaaggtggcgctggaaagtctgcgcttcgacggCTCAGACCCG
TCGGACCCCAGGGTTGTGCTGGGCAACTTTGAGGCAGTGGCATTCGTGGA
CGATGACGAAGACCTCCGCATGCGTGGGCAGGTGGGCAACGCGTTGTACC
AAGCGCCGGAGATGGTGCGGGGCGCGagctacagcgcgtctgtggatatg
tatgcgctgggagtatgtgtgtaccgcatgCTGAGCGGATCGTTTCCGGT
GCAAGGAAGTGGGCTTGGGCGGGATGGAGTTGAGGAGGCTGCCTTTGATG
GGGAAAGGtggaacaatatctcggcggaggccaagtcttttgtgaaggct
cttctcaagccgtgctacttgagTCGGCTGACGGCTAAAGCGGCGGAGGA
TGACGGATGGTTCAGAATCCACTTAATCGATGTGGAGGAGCAGTGGAGCT
TGACTGGTTGCGCGGATGCGGCAAGCGAAGCGGCGGCGTCTGAAAGATCA
GTGGGGTATGTGGAAGAGGCGGGAGAGAGTGTGGCGGTGGTGCACCGCAT
GAGCAATGCCAAGGCGCATGTGACGCCGTTGATGCGACTGCTGAGTCCGG
TGACGGCCGAAGCGCCTCAAAGTTTGCGGTCGGTTGTTGGCTAA
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protein sequence of Ggra1605.t1

>Ggra1605.t1 ID=Ggra1605.t1|Name=Ggra1605.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=448bp
MIYPTVVEKNAQMYDCIGWVRVRESFFSRGKTWYMRLHGSTLTLHKSIDT
SMVLEYSVVGCEVKTGLFPRCFTLKLPERKKLRVSCDFPSEAETWKQSLS
KASSTIFQDEFELLEEVEDMGGCTLFSAVQKSDNSKVSVRRIAVDEEQHL
DLKTAKSLHRQLYAVRQLYHYTLMGATRVFSEVGYAYMVGKTVGGKRLTQ
VLSEHGGTLPESMARIITIQLVQALQFMHSKGFVHRKVALESLRFDGSDP
SDPRVVLGNFEAVAFVDDDEDLRMRGQVGNALYQAPEMVRGASYSASVDM
YALGVCVYRMLSGSFPVQGSGLGRDGVEEAAFDGERWNNISAEAKSFVKA
LLKPCYLSRLTAKAAEDDGWFRIHLIDVEEQWSLTGCADAASEAAASERS
VGYVEEAGESVAVVHRMSNAKAHVTPLMRLLSPVTAEAPQSLRSVVG*
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mRNA from alignment at tig00000146_pilon:33708..35051+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1605.t1 ID=Ggra1605.t1|Name=Ggra1605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000146_pilon:33708..35051+ (Gracilaria gracilis GNS1m male)
ATGATCTATCCGACGGTGGTCGAGAAGAACGCGCAGATGTATGACTGCAT
CGGATGGGTCCGAGTGCGCGAATCGTTCTTTTCGCGTGGCAAGACTTGGT
ACATGCGGTTGCATGGTTCAACTCTAACCCTGCACAAGTCAATTGACACG
AGCATGGTGTTGGAGTATTCAGTGGTTGGGTGCGAGGTGAAGACCGGCCT
CTTTCCCCGGTGCTTTACCCTTAAGCTTCCCGAGAGAAAGAAACTTCGGG
TGTCTTGTGATTTCCCGAGCGAAGCAGAAACTTGGAAGCAGTCGCTATCA
AAGGCTTCCAGTACAATCTTCCAGGATGAGTTCGAACTGCTCGAGGAAGT
GGAAGACATGGGCGGATGCACGTTGTTCAGCGCCGTTCAAAAGTCTGACA
ACTCCAAAGTGTCAGTACGGCGCATAGCGGTGGATGAAGAGCAGCACTTG
GATTTAAAGACAGCTAAGTCACTCCACCGCCAGCTGTATGCCGTCCGCCA
GCTATATCACTACACCTTGATGGGCGCCACAAGAGTGTTCAGTGAGGTGG
GTTATGCGTACATGGTGGGCAAAACCGTAGGTGGGAAACGGCTCACGCAA
GTGCTTTCCGAGCATGGCGGTACGCTGCCGGAAAGTATGGCGCGGATCAT
CACGatccaactggtgcaggcgctgcagttcatgcacagcaaggggtttg
tgcaccgcaaggtggcgctggaaagtctgcgcttcgacggCTCAGACCCG
TCGGACCCCAGGGTTGTGCTGGGCAACTTTGAGGCAGTGGCATTCGTGGA
CGATGACGAAGACCTCCGCATGCGTGGGCAGGTGGGCAACGCGTTGTACC
AAGCGCCGGAGATGGTGCGGGGCGCGagctacagcgcgtctgtggatatg
tatgcgctgggagtatgtgtgtaccgcatgCTGAGCGGATCGTTTCCGGT
GCAAGGAAGTGGGCTTGGGCGGGATGGAGTTGAGGAGGCTGCCTTTGATG
GGGAAAGGtggaacaatatctcggcggaggccaagtcttttgtgaaggct
cttctcaagccgtgctacttgagTCGGCTGACGGCTAAAGCGGCGGAGGA
TGACGGATGGTTCAGAATCCACTTAATCGATGTGGAGGAGCAGTGGAGCT
TGACTGGTTGCGCGGATGCGGCAAGCGAAGCGGCGGCGTCTGAAAGATCA
GTGGGGTATGTGGAAGAGGCGGGAGAGAGTGTGGCGGTGGTGCACCGCAT
GAGCAATGCCAAGGCGCATGTGACGCCGTTGATGCGACTGCTGAGTCCGG
TGACGGCCGAAGCGCCTCAAAGTTTGCGGTCGGTTGTTGGCTAA
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Coding sequence (CDS) from alignment at tig00000146_pilon:33708..35051+

>Ggra1605.t1 ID=Ggra1605.t1|Name=Ggra1605.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000146_pilon:33708..35051+ (Gracilaria gracilis GNS1m male)
ATGATCTATCCGACGGTGGTCGAGAAGAACGCGCAGATGTATGACTGCAT
CGGATGGGTCCGAGTGCGCGAATCGTTCTTTTCGCGTGGCAAGACTTGGT
ACATGCGGTTGCATGGTTCAACTCTAACCCTGCACAAGTCAATTGACACG
AGCATGGTGTTGGAGTATTCAGTGGTTGGGTGCGAGGTGAAGACCGGCCT
CTTTCCCCGGTGCTTTACCCTTAAGCTTCCCGAGAGAAAGAAACTTCGGG
TGTCTTGTGATTTCCCGAGCGAAGCAGAAACTTGGAAGCAGTCGCTATCA
AAGGCTTCCAGTACAATCTTCCAGGATGAGTTCGAACTGCTCGAGGAAGT
GGAAGACATGGGCGGATGCACGTTGTTCAGCGCCGTTCAAAAGTCTGACA
ACTCCAAAGTGTCAGTACGGCGCATAGCGGTGGATGAAGAGCAGCACTTG
GATTTAAAGACAGCTAAGTCACTCCACCGCCAGCTGTATGCCGTCCGCCA
GCTATATCACTACACCTTGATGGGCGCCACAAGAGTGTTCAGTGAGGTGG
GTTATGCGTACATGGTGGGCAAAACCGTAGGTGGGAAACGGCTCACGCAA
GTGCTTTCCGAGCATGGCGGTACGCTGCCGGAAAGTATGGCGCGGATCAT
CACGatccaactggtgcaggcgctgcagttcatgcacagcaaggggtttg
tgcaccgcaaggtggcgctggaaagtctgcgcttcgacggCTCAGACCCG
TCGGACCCCAGGGTTGTGCTGGGCAACTTTGAGGCAGTGGCATTCGTGGA
CGATGACGAAGACCTCCGCATGCGTGGGCAGGTGGGCAACGCGTTGTACC
AAGCGCCGGAGATGGTGCGGGGCGCGagctacagcgcgtctgtggatatg
tatgcgctgggagtatgtgtgtaccgcatgCTGAGCGGATCGTTTCCGGT
GCAAGGAAGTGGGCTTGGGCGGGATGGAGTTGAGGAGGCTGCCTTTGATG
GGGAAAGGtggaacaatatctcggcggaggccaagtcttttgtgaaggct
cttctcaagccgtgctacttgagTCGGCTGACGGCTAAAGCGGCGGAGGA
TGACGGATGGTTCAGAATCCACTTAATCGATGTGGAGGAGCAGTGGAGCT
TGACTGGTTGCGCGGATGCGGCAAGCGAAGCGGCGGCGTCTGAAAGATCA
GTGGGGTATGTGGAAGAGGCGGGAGAGAGTGTGGCGGTGGTGCACCGCAT
GAGCAATGCCAAGGCGCATGTGACGCCGTTGATGCGACTGCTGAGTCCGG
TGACGGCCGAAGCGCCTCAAAGTTTGCGGTCGGTTGTTGGCTAA
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