Ggra1601.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1601.t1
Unique NameGgra1601.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000133_piloncontigtig00000133_pilon:4370..4887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL002387-PA
Preferred nameCDK5RAP3
PFAMsDUF773
Max annot lvl33208|Metazoa
KEGG koko:K20349
KEGG TC9.B.188
GOsGO:0000075,GO:0000077,GO:0000079,GO:0000278,GO:0001932,GO:0001933,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006355,GO:0006357,GO:0006464,GO:0006469,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006974,GO:0006986,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010389,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010921,GO:0010948,GO:0010972,GO:0012501,GO:0012505,GO:0015630,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022402,GO:0022411,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030262,GO:0030332,GO:0030968,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032088,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0033673,GO:0034620,GO:0034976,GO:0035303,GO:0035966,GO:0035967,GO:0036211,GO:0042176,GO:0042177,GO:0042221,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043433,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044387,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0044877,GO:0045595,GO:0045664,GO:0045786,GO:0045859,GO:0045893,GO:0045930,GO:0045935,GO:0045936,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051019,GO:0051059,GO:0051090,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051338,GO:0051348,GO:0051716,GO:0051726,GO:0051960,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0071310,GO:0071569,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080090,GO:0097194,GO:0097371,GO:1900180,GO:1900182,GO:1901564,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902533,GO:1902680,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903322,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904029,GO:2000026,GO:2000112,GO:2001141
Evalue6.89e-11
EggNOG OGsKOG2607@1|root,KOG2607@2759|Eukaryota,39U4T@33154|Opisthokonta,3BGU1@33208|Metazoa,3D12R@33213|Bilateria,41VIK@6656|Arthropoda,3SFMZ@50557|Insecta,451RY@7147|Diptera,45G0Z@7148|Nematocera
DescriptionProtein of unknown function (DUF773)
COG categoryT
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1601Ggra1601Gracilaria gracilis GNS1m malegenetig00000133_pilon 4370..4887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1601.t1.CDS1Ggra1601.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000133_pilon 4370..4887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1601.t1.exon1Ggra1601.t1.exon1Gracilaria gracilis GNS1m maleexontig00000133_pilon 4370..4887 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1601.t1.start1Ggra1601.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000133_pilon 4885..4887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1601.t1Ggra1601.t1Gracilaria gracilis GNS1m malepolypeptidetig00000133_pilon 4370..4887 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1601.t1 ID=Ggra1601.t1|Name=Ggra1601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MSRIAAAEQSLPIDIHYNKLQHWLVDRRAIPSKWALHLSTARTLTRVALF
QTPAALQTALDIPSLTPHQHLPSLTVHQVCQQLTTTPNDPTQSPLPSGPP
LDKDLLGRFKSPLLRAWYAAVSAFEHHATYLVDAAHHLTHNVNHEAPALR
SSIARLSRTISESSRRESQLRQX
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spliced messenger RNA

>Ggra1601.t1 ID=Ggra1601.t1|Name=Ggra1601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp|location=Sequence derived from alignment at tig00000133_pilon:4370..4887- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGCATCGCCGCCGCAGAGCAGTCGTTGCCCATCGACATCCATTA
CAACAAGCTGCAACACTGGCTAGTAGATCGCCGCGCAATCCCTTCCAAAT
GGGCCCTTCATCTTTCCACAGCCCGCACCCTCACCCGCGTCGCCCTTTTC
CAAACGCCCGCCGCCCTTCAAACCGCGCTCGACATCCCCTCTCTCACCCC
GCATCAACATCTGCCTTCTCTCACCGTCCATCAAGTCTGCCAGCAGCTCA
CCACCACCCCGAACGACCCCACCCAATCACCGCTCCCGTCCGGGCCGCCG
CTCGACAAAGATCTGCTCGGTCGCTTCAAATCCCCGCTGCTTCGAGCGTG
GTATGCTGCCGTGTCCGCGTTTGAACACCATGCCACCTATCTTGTTGACG
CTGCACACCATCTCACGCACAACGTCAATCACGAAGCTCCAGCGCTCAGG
TCATCTATTGCTCGTCTCTCTCGCACCATATCCGAATCTTCTCGTCGCGA
ATCACAACTTAGACAAAG
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protein sequence of Ggra1601.t1

>Ggra1601.t1 ID=Ggra1601.t1|Name=Ggra1601.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MSRIAAAEQSLPIDIHYNKLQHWLVDRRAIPSKWALHLSTARTLTRVALF
QTPAALQTALDIPSLTPHQHLPSLTVHQVCQQLTTTPNDPTQSPLPSGPP
LDKDLLGRFKSPLLRAWYAAVSAFEHHATYLVDAAHHLTHNVNHEAPALR
SSIARLSRTISESSRRESQLRQX
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mRNA from alignment at tig00000133_pilon:4370..4887-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1601.t1 ID=Ggra1601.t1|Name=Ggra1601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp|location=Sequence derived from alignment at tig00000133_pilon:4370..4887- (Gracilaria gracilis GNS1m male)
ATGAGCCGCATCGCCGCCGCAGAGCAGTCGTTGCCCATCGACATCCATTA
CAACAAGCTGCAACACTGGCTAGTAGATCGCCGCGCAATCCCTTCCAAAT
GGGCCCTTCATCTTTCCACAGCCCGCACCCTCACCCGCGTCGCCCTTTTC
CAAACGCCCGCCGCCCTTCAAACCGCGCTCGACATCCCCTCTCTCACCCC
GCATCAACATCTGCCTTCTCTCACCGTCCATCAAGTCTGCCAGCAGCTCA
CCACCACCCCGAACGACCCCACCCAATCACCGCTCCCGTCCGGGCCGCCG
CTCGACAAAGATCTGCTCGGTCGCTTCAAATCCCCGCTGCTTCGAGCGTG
GTATGCTGCCGTGTCCGCGTTTGAACACCATGCCACCTATCTTGTTGACG
CTGCACACCATCTCACGCACAACGTCAATCACGAAGCTCCAGCGCTCAGG
TCATCTATTGCTCGTCTCTCTCGCACCATATCCGAATCTTCTCGTCGCGA
ATCACAACTTAGACAAAG
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Coding sequence (CDS) from alignment at tig00000133_pilon:4370..4887-

>Ggra1601.t1 ID=Ggra1601.t1|Name=Ggra1601.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=518bp|location=Sequence derived from alignment at tig00000133_pilon:4370..4887- (Gracilaria gracilis GNS1m male)
ATGAGCCGCATCGCCGCCGCAGAGCAGTCGTTGCCCATCGACATCCATTA
CAACAAGCTGCAACACTGGCTAGTAGATCGCCGCGCAATCCCTTCCAAAT
GGGCCCTTCATCTTTCCACAGCCCGCACCCTCACCCGCGTCGCCCTTTTC
CAAACGCCCGCCGCCCTTCAAACCGCGCTCGACATCCCCTCTCTCACCCC
GCATCAACATCTGCCTTCTCTCACCGTCCATCAAGTCTGCCAGCAGCTCA
CCACCACCCCGAACGACCCCACCCAATCACCGCTCCCGTCCGGGCCGCCG
CTCGACAAAGATCTGCTCGGTCGCTTCAAATCCCCGCTGCTTCGAGCGTG
GTATGCTGCCGTGTCCGCGTTTGAACACCATGCCACCTATCTTGTTGACG
CTGCACACCATCTCACGCACAACGTCAATCACGAAGCTCCAGCGCTCAGG
TCATCTATTGCTCGTCTCTCTCGCACCATATCCGAATCTTCTCGTCGCGA
ATCACAACTTAGACAAAG
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