Ggra1599.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1599.t1
Unique NameGgra1599.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:759478..760390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1157634.KB912946_gene2997
PFAMsLCM
Max annot lvl201174|Actinobacteria
Evalue1.16e-10
EggNOG OGsCOG3315@1|root,COG3315@2|Bacteria,2ICBN@201174|Actinobacteria
DescriptionExhibits S-adenosyl-L-methionine-dependent methyltransferase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1599Ggra1599Gracilaria gracilis GNS1m malegenetig00000844_pilon 759478..760390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1599.t1Ggra1599.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 759478..760390 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1599.t1.stop1Ggra1599.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 759478..759480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1599.t1.CDS1Ggra1599.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 759478..759503 -
Ggra1599.t1.CDS2Ggra1599.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 759625..760390 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1599.t1.exon1Ggra1599.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 759478..759503 -
Ggra1599.t1.exon2Ggra1599.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 759625..760390 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1599.t1.intron1Ggra1599.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 759504..759624 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1599.t1.start1Ggra1599.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 760388..760390 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1599.t1 ID=Ggra1599.t1|Name=Ggra1599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MFSAMWRAPARDAPSPPCCCERADTYLNSALLNAACRAVETHSPRALVED
PLADALTTPFIRRRVEQGQPQYVQPVIHARYRRDFVAKHLCSPFDKRVQL
VSLGTGFDAAPANSGGGDGAALVEVFELDVLPFVAQKRRLLSEARFEQRG
VHAKSLAVDHVRERPDWPIKLLANGFDTCVHTVWLLDYTSPLLSDVQLDK
LLSDVRALSRPGSMLLLQVCRRHNAQLLTDARRVFRRLGFVVMDVHHVGD
AHASYDIYLRLHL*
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spliced messenger RNA

>Ggra1599.t1 ID=Ggra1599.t1|Name=Ggra1599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000844_pilon:759478..760390- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCCGCCATGTGGCGCGCGCCCGCGCGCGACGCGCCGTCGCCGCC
GTGCTGCTGCGAGCGCGCCGACACGTACCTCAACTCGGCGCTGCTCAACG
CCGCGTGTCGCGCCGTGGAGACGCACTCGCCGCGCGCGCTCGTTGAAGAC
CCGTTGGCCGACGCGCTCACCACGCCGTTCATCCGCCGCCGCGTGGAGCA
GGGCCAGCCGCAGTACGTGCAGCCCGTCATTCACGCGCGCTACCGCCGCG
ACTTTGTTGCAAAGCACCTGTGCTCGCCGTTTGATAAGCGCGTGCAGCTG
GTTTCGCTGGGTACGGGCTTTGATGCCGCGCCTGCTAACAGTGGCGGCGG
CGACGGTGCGGCGCTCGTCGAGGTGTTTGAACTGGATGTGCTCCCATTCG
TTGCACAGAAGCGCCGGCTGTTGAGTGAGGCGCGCTTCGAGCAGCGCGGT
GTGCACGCCAAGAGTTTGGCGGTGGATCATGTGCGTGAACGCCCCGATTG
GCCCATCAAACTGCTGGCGAATGGCTTTGATACTTGTGTTCACACCGTGT
GGTTGTTGGATTACACCTCGCCCTTGCTCAGCGACGTCCAACTGGACAAG
CTTTTGAGCGACGTCAGAGCGCTCAGTCGCCCTGGAAGTATGCTGTTGTT
GCAGGTTTGTCGCCGACATAACGCGCAGCTGTTGACGGATGCGCGCCGCG
TGTTTCGCCGCTTGGGGTTTGTGGTTATGGATGTGCATCATGTGGGTGAT
GCTCACGCCTCTTACGACATCTATCTGCGCCTGCACCTTTGA
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protein sequence of Ggra1599.t1

>Ggra1599.t1 ID=Ggra1599.t1|Name=Ggra1599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MFSAMWRAPARDAPSPPCCCERADTYLNSALLNAACRAVETHSPRALVED
PLADALTTPFIRRRVEQGQPQYVQPVIHARYRRDFVAKHLCSPFDKRVQL
VSLGTGFDAAPANSGGGDGAALVEVFELDVLPFVAQKRRLLSEARFEQRG
VHAKSLAVDHVRERPDWPIKLLANGFDTCVHTVWLLDYTSPLLSDVQLDK
LLSDVRALSRPGSMLLLQVCRRHNAQLLTDARRVFRRLGFVVMDVHHVGD
AHASYDIYLRLHL*
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mRNA from alignment at tig00000844_pilon:759478..760390-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1599.t1 ID=Ggra1599.t1|Name=Ggra1599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=913bp|location=Sequence derived from alignment at tig00000844_pilon:759478..760390- (Gracilaria gracilis GNS1m male)
ATGTTCTCCGCCATGTGGCGCGCGCCCGCGCGCGACGCGCCGTCGCCGCC
GTGCTGCTGCGAGCGCGCCGACACGTACCTCAACTCGGCGCTGCTCAACG
CCGCGTGTCGCGCCGTGGAGACGCACTCGCCGCGCGCGCTCGTTGAAGAC
CCGTTGGCCGACGCGCTCACCACGCCGTTCATCCGCCGCCGCGTGGAGCA
GGGCCAGCCGCAGTACGTGCAGCCCGTCATTCACGCGCGCTACCGCCGCG
ACTTTGTTGCAAAGCACCTGTGCTCGCCGTTTGATAAGCGCGTGCAGCTG
GTTTCGCTGGGTACGGGCTTTGATGCCGCGCCTGCTAACAGTGGCGGCGG
CGACGGTGCGGCGCTCGTCGAGGTGTTTGAACTGGATGTGCTCCCATTCG
TTGCACAGAAGCGCCGGCTGTTGAGTGAGGCGCGCTTCGAGCAGCGCGGT
GTGCACGCCAAGAGTTTGGCGGTGGATCATGTGCGTGAACGCCCCGATTG
GCCCATCAAACTGCTGGCGAATGGCTTTGATACTTGTGTTCACACCGTGT
GGTTGTTGGATTACACCTCGCCCTTGCTCAGCGACGTCCAACTGGACAAG
CTTTTGAGCGACGTCAGAGCGCTCAGTCGCCCTGGAAGTATGCTGTTGTT
GCAGGTTTGTCGCCGACATAACGCGCAGCTGTTGACGGATGCGCGCCGCG
TGTTTCGCCGCTTGGGGTTTGTGGTTATGGATGTGCATCATGTGGGTGAT
GCTCACGCCTCTTACGGTAGGTGGTGCTTTGATACCCCAGCCTCATCTGC
CTTTATTACCGCGTCGAAGACCTGTGTGTAGATTCACTCTTGGCCTACGA
CCATTTACTTTCCGCACCTACTCACATGCCGTTTCAGACATCTATCTGCG
CCTGCACCTTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:759478..760390-

>Ggra1599.t1 ID=Ggra1599.t1|Name=Ggra1599.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000844_pilon:759478..760390- (Gracilaria gracilis GNS1m male)
ATGTTCTCCGCCATGTGGCGCGCGCCCGCGCGCGACGCGCCGTCGCCGCC
GTGCTGCTGCGAGCGCGCCGACACGTACCTCAACTCGGCGCTGCTCAACG
CCGCGTGTCGCGCCGTGGAGACGCACTCGCCGCGCGCGCTCGTTGAAGAC
CCGTTGGCCGACGCGCTCACCACGCCGTTCATCCGCCGCCGCGTGGAGCA
GGGCCAGCCGCAGTACGTGCAGCCCGTCATTCACGCGCGCTACCGCCGCG
ACTTTGTTGCAAAGCACCTGTGCTCGCCGTTTGATAAGCGCGTGCAGCTG
GTTTCGCTGGGTACGGGCTTTGATGCCGCGCCTGCTAACAGTGGCGGCGG
CGACGGTGCGGCGCTCGTCGAGGTGTTTGAACTGGATGTGCTCCCATTCG
TTGCACAGAAGCGCCGGCTGTTGAGTGAGGCGCGCTTCGAGCAGCGCGGT
GTGCACGCCAAGAGTTTGGCGGTGGATCATGTGCGTGAACGCCCCGATTG
GCCCATCAAACTGCTGGCGAATGGCTTTGATACTTGTGTTCACACCGTGT
GGTTGTTGGATTACACCTCGCCCTTGCTCAGCGACGTCCAACTGGACAAG
CTTTTGAGCGACGTCAGAGCGCTCAGTCGCCCTGGAAGTATGCTGTTGTT
GCAGGTTTGTCGCCGACATAACGCGCAGCTGTTGACGGATGCGCGCCGCG
TGTTTCGCCGCTTGGGGTTTGTGGTTATGGATGTGCATCATGTGGGTGAT
GCTCACGCCTCTTACGACATCTATCTGCGCCTGCACCTTTGA
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