Ggra1591.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1591.t1
Unique Name	Ggra1591.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:688200..691238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005849688.1
Max annot lvl	3041\|Chlorophyta
Evalue	0.000596
EggNOG OGs	29I7E@1\|root,2RREH@2759\|Eukaryota,382EP@33090\|Viridiplantae,34NWA@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1591	Ggra1591	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 688200..691238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1591.t1	Ggra1591.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 688200..691238 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1591.t1.start1	Ggra1591.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 688200..688202 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1591.t1.CDS1	Ggra1591.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 688200..689589 +
Ggra1591.t1.CDS2	Ggra1591.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 690598..691238 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1591.t1.exon1	Ggra1591.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 688200..689589 +
Ggra1591.t1.exon2	Ggra1591.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 690598..691238 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1591.t1.intron1	Ggra1591.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000844_pilon 689590..690597 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1591.t1.stop1	Ggra1591.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 691236..691238 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:688200..691238+
coding sequence from alignment at tig00000844_pilon:688200..691238+

mRNA sequence

>Ggra1591.t1 ID=Ggra1591.t1|Name=Ggra1591.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=677bp
MAPTDRDTMQRLYRSADIFFALRDSFAEEGSHKGRPREAGFRTIAQYAAE
NHERLDLARQFLETKVQSPNLGNFEIEDLKETVIRKKPLEQMYMVCRILD
VTDDSSDTRTRDLMKMISRSPHALPIRCYLTPFLRSFTAVVKSQSDMFFR
TFRSPTRFGILLYLSNLLYIMREKESRRQNKKRRLTTGAAPGIFLEGFPN
FSKETCQRTGFAVERTIYAWDIFARGLGFDDVESMIYPYIMFDTNNMMFK
VLDNRSIGYCPLSHHTRVEENVEPTMKRGGVVAAFSDDVDSNLRILAKEF
LDDVHGMCTHERLYTLQGQNKHERWVTLEQLTPDMDRKARDPSHTRDEQF
PERFDRLAEDLWKPILDATGCARAEASNADVEMVQAPVNLVSSDEDDFEP
APVPIRSKFDTLDRTVEPPKVAKGRFLPNAMKQLNELMRTSYSVLYNCNQ
KDLVVTHESLGMETVGDWPEKYRGALDRVDSRSLLAQDASCSSVTVAKST
IKHPKAGLGVFATTAFKENDVICHFYGTLVYHNLSNRDETHTTYGKGMLG
VTAERFRKYCIETELEGDVFLILTGNSGGDRKKPVVWVVPAPFCAAGYIN
DARYVEGDPEKDGLVPPRGWRDNNASIERTKRGTTSLRNLEAPQLLSIIA
ARDIEEGEEIFMDYGRPYDWAKQLSS*

spliced messenger RNA

>Ggra1591.t1 ID=Ggra1591.t1|Name=Ggra1591.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000844_pilon:688200..691238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTACAGATCGTGACACTATGCAACGATTGTATCGGTCCGCTGA
CATTTTCTTCGCTTTGCGGGACTCCTTCGCCGAGGAGGGGTCCCACAAAG
GGCGCCCTAGAGAAGCCGGTTTTCGTACAATTGCCCAATACGCAGCAGAG
AACCACGAACGTCTGGACCTTGCACGACAGTTTCTCGAGACAAAAGTGCA
GTCTCCCAACCTCGGGAACTTCGAAATCGAAGATTTAAAGGAGACGGTGA
TCCGAAAGAAACCATTGGAGCAGATGTACATGGTTTGCAGAATTCTGGAC
GTAACCGATGACAGTTCTGATACACGTACGAGGGATTTAATGAAGATGAT
ATCGAGGTCTCCGCACGCCTTACCGATTCGATGTTATTTGACCCCGTTTC
TCAGATCATTCACGGCTGTAGTGAAAAGTCAATCGGATATGTTTTTTAGA
ACGTTTAGAAGCCCTACTCGCTTCGGTATTCTTTTATACCTTTCAAACCT
TCTTTACATTATGAGGGAAAAAGAAAGCCGGAGGCAGAATAAGAAACGTC
GTCTTACAACCGGTGCAGCTCCTGGCATCTTCTTGGAGGGCTTTCCCAAC
TTCTCGAAGGAGACCTGTCAACGTACTGGATTCGCCGTGGAGAGGACGAT
TTACGCTTGGGACATTTTTGCTAGGGGCCTTGGCTTTGACGACGTTGAGA
GTATGATATACCCGTACATCATGTTCGACACAAACAACATGATGTTTAAG
GTGTTAGACAATCGGTCTATTGGATACTGCCCTCTCAGTCATCATACTCG
TGTTGAGGAGAACGTGGAGCCTACGATGAAAAGAGGGGGTGTCGTGGCCG
CCTTCAGTGATGATGTGGATTCGAATCTTCGCATTCTGGCCAAAGAATTC
TTGGATGACGTACATGGTATGTGTACTCATGAACGCCTGTATACGCTGCA
AGGACAAAACAAGCATGAGCGCTGGGTTACGCTAGAACAACTCACTCCTG
ACATGGACCGTAAAGCGCGAGACCCAAGCCACACCCGTGATGAACAGTTC
CCTGAACGGTTCGATAGGTTGGCAGAAGACCTGTGGAAACCCATTCTGGA
CGCCACAGGCTGTGCTAGGGCTGAGGCATCGAATGCGGATGTAGAAATGG
TACAGGCACCCGTGAACTTGGTGTCTTCAGACGAAGATGATTTCGAACCA
GCTCCTGTTCCCATTCGTTCAAAGTTTGACACTCTGGATAGAACTGTCGA
GCCTCCAAAGGTCGCAAAGGGTCGTTTTCTGCCAAATGCAATGAAGCAGC
TGAACGAATTGATGAGGACCTCTTACTCTGTTTTATACAATTGCAACCAG
AAAGACCTAGTTGTCACGCACGAGTCTTTGGGAATGGAGACTGTTGGTGA
CTGGCCCGAGAAATACCGCGGGGCTCTCGATCGTGTGGACAGTCGGTCTC
TTCTCGCGCAGGATGCAAGTTGTTCCTCTGTGACTGTAGCGAAGTCTACC
ATCAAACACCCCAAAGCCGGTTTGGGCGTGTTTGCCACTACCGCTTTCAA
AGAAAATGATGTCATTTGTCATTTCTATGGTACATTAGTGTATCACAACC
TAAGTAACCGTGATGAGACTCATACGACATACGGAAAAGGAATGCTTGGC
GTCACGGCGGAACGCTTTCGCAAGTATTGTATCGAAACGGAATTGGAAGG
GGATGTGTTTCTCATACTCACTGGAAATAGCGGTGGAGACAGGAAGAAAC
CTGTGGTATGGGTGGTTCCTGCACCTTTTTGTGCAGCTGGTTATATCAAT
GACGCCAGGTACGTTGAAGGGGACCCCGAGAAAGATGGTCTGGTACCTCC
TAGAGGATGGAGGGATAACAATGCCTCCATCGAGAGAACAAAGAGAGGAA
CGACGTCCTTGAGGAATTTGGAAGCTCCTCAACTTCTTTCTATTATAGCA
GCACGAGATATTGAAGAAGGAGAGGAGATATTTATGGACTATGGACGACC
GTATGATTGGGCGAAGCAACTTTCCTCTTAA

protein sequence of Ggra1591.t1

>Ggra1591.t1 ID=Ggra1591.t1|Name=Ggra1591.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=677bp
MAPTDRDTMQRLYRSADIFFALRDSFAEEGSHKGRPREAGFRTIAQYAAE
NHERLDLARQFLETKVQSPNLGNFEIEDLKETVIRKKPLEQMYMVCRILD
VTDDSSDTRTRDLMKMISRSPHALPIRCYLTPFLRSFTAVVKSQSDMFFR
TFRSPTRFGILLYLSNLLYIMREKESRRQNKKRRLTTGAAPGIFLEGFPN
FSKETCQRTGFAVERTIYAWDIFARGLGFDDVESMIYPYIMFDTNNMMFK
VLDNRSIGYCPLSHHTRVEENVEPTMKRGGVVAAFSDDVDSNLRILAKEF
LDDVHGMCTHERLYTLQGQNKHERWVTLEQLTPDMDRKARDPSHTRDEQF
PERFDRLAEDLWKPILDATGCARAEASNADVEMVQAPVNLVSSDEDDFEP
APVPIRSKFDTLDRTVEPPKVAKGRFLPNAMKQLNELMRTSYSVLYNCNQ
KDLVVTHESLGMETVGDWPEKYRGALDRVDSRSLLAQDASCSSVTVAKST
IKHPKAGLGVFATTAFKENDVICHFYGTLVYHNLSNRDETHTTYGKGMLG
VTAERFRKYCIETELEGDVFLILTGNSGGDRKKPVVWVVPAPFCAAGYIN
DARYVEGDPEKDGLVPPRGWRDNNASIERTKRGTTSLRNLEAPQLLSIIA
ARDIEEGEEIFMDYGRPYDWAKQLSS*

mRNA from alignment at tig00000844_pilon:688200..691238+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1591.t1 ID=Ggra1591.t1|Name=Ggra1591.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3039bp|location=Sequence derived from alignment at tig00000844_pilon:688200..691238+ (Gracilaria gracilis GNS1m male)
ATGGCGCCTACAGATCGTGACACTATGCAACGATTGTATCGGTCCGCTGA
CATTTTCTTCGCTTTGCGGGACTCCTTCGCCGAGGAGGGGTCCCACAAAG
GGCGCCCTAGAGAAGCCGGTTTTCGTACAATTGCCCAATACGCAGCAGAG
AACCACGAACGTCTGGACCTTGCACGACAGTTTCTCGAGACAAAAGTGCA
GTCTCCCAACCTCGGGAACTTCGAAATCGAAGATTTAAAGGAGACGGTGA
TCCGAAAGAAACCATTGGAGCAGATGTACATGGTTTGCAGAATTCTGGAC
GTAACCGATGACAGTTCTGATACACGTACGAGGGATTTAATGAAGATGAT
ATCGAGGTCTCCGCACGCCTTACCGATTCGATGTTATTTGACCCCGTTTC
TCAGATCATTCACGGCTGTAGTGAAAAGTCAATCGGATATGTTTTTTAGA
ACGTTTAGAAGCCCTACTCGCTTCGGTATTCTTTTATACCTTTCAAACCT
TCTTTACATTATGAGGGAAAAAGAAAGCCGGAGGCAGAATAAGAAACGTC
GTCTTACAACCGGTGCAGCTCCTGGCATCTTCTTGGAGGGCTTTCCCAAC
TTCTCGAAGGAGACCTGTCAACGTACTGGATTCGCCGTGGAGAGGACGAT
TTACGCTTGGGACATTTTTGCTAGGGGCCTTGGCTTTGACGACGTTGAGA
GTATGATATACCCGTACATCATGTTCGACACAAACAACATGATGTTTAAG
GTGTTAGACAATCGGTCTATTGGATACTGCCCTCTCAGTCATCATACTCG
TGTTGAGGAGAACGTGGAGCCTACGATGAAAAGAGGGGGTGTCGTGGCCG
CCTTCAGTGATGATGTGGATTCGAATCTTCGCATTCTGGCCAAAGAATTC
TTGGATGACGTACATGGTATGTGTACTCATGAACGCCTGTATACGCTGCA
AGGACAAAACAAGCATGAGCGCTGGGTTACGCTAGAACAACTCACTCCTG
ACATGGACCGTAAAGCGCGAGACCCAAGCCACACCCGTGATGAACAGTTC
CCTGAACGGTTCGATAGGTTGGCAGAAGACCTGTGGAAACCCATTCTGGA
CGCCACAGGCTGTGCTAGGGCTGAGGCATCGAATGCGGATGTAGAAATGG
TACAGGCACCCGTGAACTTGGTGTCTTCAGACGAAGATGATTTCGAACCA
GCTCCTGTTCCCATTCGTTCAAAGTTTGACACTCTGGATAGAACTGTCGA
GCCTCCAAAGGTCGCAAAGGGTCGTTTTCTGCCAAATGCAATGAAGCAGC
TGAACGAATTGATGAGGACCTCTTACTCTGTTTTATACAATTGCAACCAG
AAAGACCTAGTTGTCACGCACGAGTCTTTGGGAATGGAGAGTACCCTCAC
TCTgggagatgctcagctcgttctgacggacccaccgttcaatacgcggc
gtcgccaaggaaagagcaacagcgaccatgatgtcctcactgaaaaggat
atggagcgagcggctggcacgatcaatgatgtcctgcgccctgggggaca
tttcataatcttctgtgcagtggagcagtttctaaagtggtttgaaatta
tgaatgacacggtgaggaaggagagagtagctgttgttcgaaatggaaag
cgcgtcaacgaggaaagattcaaacctatattccgtgtggacaagactcc
aatcgtgtttatacgggaacctgggaatcacaatcagaatcccacccgtg
tttcttcactgatgtcagtcacggagtatgctatccatggtttgaaaaga
ggtcttacttcggaggaggaacggagtatggtgtctttagaaagttttca
ctacgtcccgtctacagtcgaaccatacaaaaatgtggtgaataacgtcc
cgaagaggtctaaaggagaactgttgacttggagagtgaagaagaaggat
gggtggaagacccagatcatccggccggaacagaagtcgagagagctcat
gaaggaactcatatcccgatttacaaagccaggggacaaggtagttgacc
catttgctggaacatgcaccactggaatggcatgtttgtcactaccgaag
cacaggaagttcatagggtgcgagctagacggtgcatgcattgaacatgc
TACCCATCATATGACGCTACACCTTGCCCGTGTCATCAACGATGGAACCA
CGGATATTTCCGTTGATCAAAGCACGTTGCAATCGGCATCGCGTGTGGTT
GAAGCCTACCCGCTGACGACAAGGGTCAGCAAAGCATGGAGACCACCTGG
CAAGTTTCCTCAGTATCAACGTCTTCCTCTACATATACTTGTATTCTTAC
AAAAATTGTGGTTGGATAAGTCTTTCTTTCACTTGGCGTGTAACAAAGCT
GTTGGTGACTGGCCCGAGAAATACCGCGGGGCTCTCGATCGTGTGGACAG
TCGGTCTCTTCTCGCGCAGGATGCAAGTTGTTCCTCTGTGACTGTAGCGA
AGTCTACCATCAAACACCCCAAAGCCGGTTTGGGCGTGTTTGCCACTACC
GCTTTCAAAGAAAATGATGTCATTTGTCATTTCTATGGTACATTAGTGTA
TCACAACCTAAGTAACCGTGATGAGACTCATACGACATACGGAAAAGGAA
TGCTTGGCGTCACGGCGGAACGCTTTCGCAAGTATTGTATCGAAACGGAA
TTGGAAGGGGATGTGTTTCTCATACTCACTGGAAATAGCGGTGGAGACAG
GAAGAAACCTGTGGTATGGGTGGTTCCTGCACCTTTTTGTGCAGCTGGTT
ATATCAATGACGCCAGGTACGTTGAAGGGGACCCCGAGAAAGATGGTCTG
GTACCTCCTAGAGGATGGAGGGATAACAATGCCTCCATCGAGAGAACAAA
GAGAGGAACGACGTCCTTGAGGAATTTGGAAGCTCCTCAACTTCTTTCTA
TTATAGCAGCACGAGATATTGAAGAAGGAGAGGAGATATTTATGGACTAT
GGACGACCGTATGATTGGGCGAAGCAACTTTCCTCTTAA

Coding sequence (CDS) from alignment at tig00000844_pilon:688200..691238+

>Ggra1591.t1 ID=Ggra1591.t1|Name=Ggra1591.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00000844_pilon:688200..691238+ (Gracilaria gracilis GNS1m male)
ATGGCGCCTACAGATCGTGACACTATGCAACGATTGTATCGGTCCGCTGA
CATTTTCTTCGCTTTGCGGGACTCCTTCGCCGAGGAGGGGTCCCACAAAG
GGCGCCCTAGAGAAGCCGGTTTTCGTACAATTGCCCAATACGCAGCAGAG
AACCACGAACGTCTGGACCTTGCACGACAGTTTCTCGAGACAAAAGTGCA
GTCTCCCAACCTCGGGAACTTCGAAATCGAAGATTTAAAGGAGACGGTGA
TCCGAAAGAAACCATTGGAGCAGATGTACATGGTTTGCAGAATTCTGGAC
GTAACCGATGACAGTTCTGATACACGTACGAGGGATTTAATGAAGATGAT
ATCGAGGTCTCCGCACGCCTTACCGATTCGATGTTATTTGACCCCGTTTC
TCAGATCATTCACGGCTGTAGTGAAAAGTCAATCGGATATGTTTTTTAGA
ACGTTTAGAAGCCCTACTCGCTTCGGTATTCTTTTATACCTTTCAAACCT
TCTTTACATTATGAGGGAAAAAGAAAGCCGGAGGCAGAATAAGAAACGTC
GTCTTACAACCGGTGCAGCTCCTGGCATCTTCTTGGAGGGCTTTCCCAAC
TTCTCGAAGGAGACCTGTCAACGTACTGGATTCGCCGTGGAGAGGACGAT
TTACGCTTGGGACATTTTTGCTAGGGGCCTTGGCTTTGACGACGTTGAGA
GTATGATATACCCGTACATCATGTTCGACACAAACAACATGATGTTTAAG
GTGTTAGACAATCGGTCTATTGGATACTGCCCTCTCAGTCATCATACTCG
TGTTGAGGAGAACGTGGAGCCTACGATGAAAAGAGGGGGTGTCGTGGCCG
CCTTCAGTGATGATGTGGATTCGAATCTTCGCATTCTGGCCAAAGAATTC
TTGGATGACGTACATGGTATGTGTACTCATGAACGCCTGTATACGCTGCA
AGGACAAAACAAGCATGAGCGCTGGGTTACGCTAGAACAACTCACTCCTG
ACATGGACCGTAAAGCGCGAGACCCAAGCCACACCCGTGATGAACAGTTC
CCTGAACGGTTCGATAGGTTGGCAGAAGACCTGTGGAAACCCATTCTGGA
CGCCACAGGCTGTGCTAGGGCTGAGGCATCGAATGCGGATGTAGAAATGG
TACAGGCACCCGTGAACTTGGTGTCTTCAGACGAAGATGATTTCGAACCA
GCTCCTGTTCCCATTCGTTCAAAGTTTGACACTCTGGATAGAACTGTCGA
GCCTCCAAAGGTCGCAAAGGGTCGTTTTCTGCCAAATGCAATGAAGCAGC
TGAACGAATTGATGAGGACCTCTTACTCTGTTTTATACAATTGCAACCAG
AAAGACCTAGTTGTCACGCACGAGTCTTTGGGAATGGAGACTGTTGGTGA
CTGGCCCGAGAAATACCGCGGGGCTCTCGATCGTGTGGACAGTCGGTCTC
TTCTCGCGCAGGATGCAAGTTGTTCCTCTGTGACTGTAGCGAAGTCTACC
ATCAAACACCCCAAAGCCGGTTTGGGCGTGTTTGCCACTACCGCTTTCAA
AGAAAATGATGTCATTTGTCATTTCTATGGTACATTAGTGTATCACAACC
TAAGTAACCGTGATGAGACTCATACGACATACGGAAAAGGAATGCTTGGC
GTCACGGCGGAACGCTTTCGCAAGTATTGTATCGAAACGGAATTGGAAGG
GGATGTGTTTCTCATACTCACTGGAAATAGCGGTGGAGACAGGAAGAAAC
CTGTGGTATGGGTGGTTCCTGCACCTTTTTGTGCAGCTGGTTATATCAAT
GACGCCAGGTACGTTGAAGGGGACCCCGAGAAAGATGGTCTGGTACCTCC
TAGAGGATGGAGGGATAACAATGCCTCCATCGAGAGAACAAAGAGAGGAA
CGACGTCCTTGAGGAATTTGGAAGCTCCTCAACTTCTTTCTATTATAGCA
GCACGAGATATTGAAGAAGGAGAGGAGATATTTATGGACTATGGACGACC
GTATGATTGGGCGAAGCAACTTTCCTCTTAA