Ggra1564.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1564.t1
Unique Name	Ggra1564.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	805

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:470510..472924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1564	Ggra1564	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 470510..472924 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1564.t1.start1	Ggra1564.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 470510..470512 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1564.t1.CDS1	Ggra1564.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 470510..472924 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1564.t1.exon1	Ggra1564.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 470510..472924 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1564.t1.stop1	Ggra1564.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 472922..472924 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1564.t1	Ggra1564.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 470510..472924 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:470510..472924+
coding sequence from alignment at tig00000844_pilon:470510..472924+

mRNA sequence

>Ggra1564.t1 ID=Ggra1564.t1|Name=Ggra1564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=805bp
MVTPDPYLNHMGSPGTSVRARTRSGTRRLSVPHVGQSDAVTSRDGAPSAT
NADALMVEPAWGPERVEVLSISSSDSPIVDKKPIRFTPAVECSPSQPLPR
GTHHTMSGAGPSRGRGSGIAKSGSRGAALYHSRIQTGFRSQPVPSSSNQP
QGIHEGIRDPYGPEPEIPRGISYYGLEPFTTADWNVSQHGTFGVDPRMVS
QATLYRRNWPVAPGNTSLPGVLRRPTLDTYLGLFRWDCERLRSVPQTLHR
RDKESQPRQGRVECYDSRQRHTPMRYFIPPLYPGDLPYVRIEPELHYYRR
LVVKICQYDSLPQQYLPASPHLVCFDRPYNTIHWANRRRWGVDAATEARI
RTRSSFNRVMHGFHNVEFFSQPNKGRTSWYVARPEWWNAYEVPMSLSVPT
PPVLAYFGSYITRNHDRYYLIWSIALAEWAVLVAILALQAARDGIDWDCR
SREAEIYRDGVQPPGRMFFIPPRVIRNIRLFGIGTIVAGTDYSIEQLESL
LTQVESFPWGAKQGWEVFDPVSWKVVSRAEQRYPGAPTDQGPPGSPEPFP
TVVESPAATPVVTSAPTPAPEGRNTPAHTGATPLLPSTTRVDGPPRAILG
GVMAAAAAPVPSQVDSQAISGLMARVRQACVVNFQRAGPTSVVEALTLLE
SILPRHAQYMRSFSQIGEFRNRFQVELYQMATNQVAGLATAMGPTPTNPL
EDPLFGASLNPGLLAATQAPLHIGSSAPPSVAQASAPPPMGADVMPGVSV
PTSTPVGHGSAPSQAPGQAHLFQPWPGAHQNTTPGRGSSAGGSSGPHFAT
HPSG*

spliced messenger RNA

>Ggra1564.t1 ID=Ggra1564.t1|Name=Ggra1564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2415bp|location=Sequence derived from alignment at tig00000844_pilon:470510..472924+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggtgacccccgatccttatttgaaccacatgggtagccctggtaccag
cgtgcgggctcgcacccgtagcggtacacggcgattgtcggttccccatg
ttggtcaatcggacgcggtaacctcaagggacggcgcgccatcggcgacc
aatgccgatgccttaatggttgaaccagcatggggccccgaacgggtgga
ggttttgagcatcagctctagtgactcacccattgtggataaaaagccga
ttcgcttcacccctgcggtcgaatgctcgccgtctcaaccactccctcgc
ggtactcatcacaccatgtcgggtgccggtccctcgcgcggccgcggaag
cggcattgccaagtctggttctcggggtgctgctttgtaccattcccgca
tccaaactggttttcggagccagccggttccgtcttcctcaaatcaacct
caagggattcacgaagggatccgggacccgtatggtccggagcccgagat
tcctcgtggtatttcctattatggtttggagccgttcaccacggccgact
ggaacgtgtcccaacatggtaccttcggggtcgatccgagaatggtgtcg
caagcgacgctgtaccgtcggaactggccagtggcgccggggaacacatc
gcttcccggcgtcttgcgccgtccgactttggatacctacttgggtttgt
ttcgttgggattgcgagcgtctccgctccgtcccccaaacgctccaccgt
cgggataaggaatctcaacctcgtcagggtcgggtggagtgctatgacag
ccgccagcgacacacaccaatgaggtatttcatccccccgctttatcccg
gcgatctgccgtatgttcgtattgaaccggagctccattattaccgacgt
ctggttgtgaagatctgtcagtacgactcccttccgcagcagtaccttcc
ggcttcaccacatttggtttgcttcgataggccttacaataccatccatt
gggctaaccgtcgtaggtggggggtggatgctgccaccgaggctcgcatt
cgcacccggtccagcttcaaccgcgtcatgcatgggttccataatgtgga
gtttttctcacaacctaataagggaagaacctcttggtatgtggcccgac
ctgaatggtggaatgcctatgaggtaccgatgtcgcttagcgtcccaacc
ccaccggtattggcttacttcgggagctacatcacccgtaaccacgatcg
gtattacctcatttggtcgattgccctcgcggaatgggccgtattggtgg
ccatcttggctctgcaggctgcccgtgacggtattgactgggattgtcgt
tctcgagaagccgagatttaccgtgacggtgtgcaacctcctggtcgtat
gttcttcattcccccgagggtcattcgcaacattcgcctatttggaatcg
gaaccattgtggcaggtacggactactctatcgagcagctggaatcgttg
cttacccaagtggagagtttcccgtggggagccaagcaggggtgggaggt
tttcgatccggtgtcctggaaggttgtatcccgcgcggagcagcgctatc
ccggggctccgaccgatcagggacctccagggagtcccgagccattccca
accgtggtggaatcgccagcagctacccctgtggtcacttcagcgcctac
tcccgctccagagggacgcaatacgcctgcccatactggtgccactcctc
ttctccctagtaccacacgggttgatgggcctccgcgggctatcctcggg
ggtgtcatggctgcggctgcggcgcctgtcccctctcaggtggactccca
ggccatttcaggtttaatggctcgggtccgccaagcctgtgtggtgaact
tccagcgggcgggtcctacctctgtggtcgaagctcttacccttctggaa
agcatcctgcctcgtcatgcacagtacatgcgatccttttcccaaattgg
tgagttccggaaccggttccaggtcgagctctaccagatggctaccaacc
aggtggcaggcctagcgacggccatgggcccgacgcctacaaaccctttg
gaggatcccctatttggtgctagcctgaaccccggccttctagccgctac
gcaggctcctctccacatcgggtcgtcggcacctccgtcggttgcgcagg
cgagcgcgccacctccgatgggtgccgacgtgatgccaggcgtcagcgtg
cctactagtacccccgtgggtcatggtagcgcgcctagccaggctccagg
ccaggctcacctcttccagccttggccgggagcccatcagaacaccactc
cgggtcggggatcctcagctggaggctcctcggggcctcactttgccact
cacccatcaggttga

protein sequence of Ggra1564.t1

>Ggra1564.t1 ID=Ggra1564.t1|Name=Ggra1564.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=805bp
MVTPDPYLNHMGSPGTSVRARTRSGTRRLSVPHVGQSDAVTSRDGAPSAT
NADALMVEPAWGPERVEVLSISSSDSPIVDKKPIRFTPAVECSPSQPLPR
GTHHTMSGAGPSRGRGSGIAKSGSRGAALYHSRIQTGFRSQPVPSSSNQP
QGIHEGIRDPYGPEPEIPRGISYYGLEPFTTADWNVSQHGTFGVDPRMVS
QATLYRRNWPVAPGNTSLPGVLRRPTLDTYLGLFRWDCERLRSVPQTLHR
RDKESQPRQGRVECYDSRQRHTPMRYFIPPLYPGDLPYVRIEPELHYYRR
LVVKICQYDSLPQQYLPASPHLVCFDRPYNTIHWANRRRWGVDAATEARI
RTRSSFNRVMHGFHNVEFFSQPNKGRTSWYVARPEWWNAYEVPMSLSVPT
PPVLAYFGSYITRNHDRYYLIWSIALAEWAVLVAILALQAARDGIDWDCR
SREAEIYRDGVQPPGRMFFIPPRVIRNIRLFGIGTIVAGTDYSIEQLESL
LTQVESFPWGAKQGWEVFDPVSWKVVSRAEQRYPGAPTDQGPPGSPEPFP
TVVESPAATPVVTSAPTPAPEGRNTPAHTGATPLLPSTTRVDGPPRAILG
GVMAAAAAPVPSQVDSQAISGLMARVRQACVVNFQRAGPTSVVEALTLLE
SILPRHAQYMRSFSQIGEFRNRFQVELYQMATNQVAGLATAMGPTPTNPL
EDPLFGASLNPGLLAATQAPLHIGSSAPPSVAQASAPPPMGADVMPGVSV
PTSTPVGHGSAPSQAPGQAHLFQPWPGAHQNTTPGRGSSAGGSSGPHFAT
HPSG*

mRNA from alignment at tig00000844_pilon:470510..472924+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1564.t1 ID=Ggra1564.t1|Name=Ggra1564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2415bp|location=Sequence derived from alignment at tig00000844_pilon:470510..472924+ (Gracilaria gracilis GNS1m male)
atggtgacccccgatccttatttgaaccacatgggtagccctggtaccag
cgtgcgggctcgcacccgtagcggtacacggcgattgtcggttccccatg
ttggtcaatcggacgcggtaacctcaagggacggcgcgccatcggcgacc
aatgccgatgccttaatggttgaaccagcatggggccccgaacgggtgga
ggttttgagcatcagctctagtgactcacccattgtggataaaaagccga
ttcgcttcacccctgcggtcgaatgctcgccgtctcaaccactccctcgc
ggtactcatcacaccatgtcgggtgccggtccctcgcgcggccgcggaag
cggcattgccaagtctggttctcggggtgctgctttgtaccattcccgca
tccaaactggttttcggagccagccggttccgtcttcctcaaatcaacct
caagggattcacgaagggatccgggacccgtatggtccggagcccgagat
tcctcgtggtatttcctattatggtttggagccgttcaccacggccgact
ggaacgtgtcccaacatggtaccttcggggtcgatccgagaatggtgtcg
caagcgacgctgtaccgtcggaactggccagtggcgccggggaacacatc
gcttcccggcgtcttgcgccgtccgactttggatacctacttgggtttgt
ttcgttgggattgcgagcgtctccgctccgtcccccaaacgctccaccgt
cgggataaggaatctcaacctcgtcagggtcgggtggagtgctatgacag
ccgccagcgacacacaccaatgaggtatttcatccccccgctttatcccg
gcgatctgccgtatgttcgtattgaaccggagctccattattaccgacgt
ctggttgtgaagatctgtcagtacgactcccttccgcagcagtaccttcc
ggcttcaccacatttggtttgcttcgataggccttacaataccatccatt
gggctaaccgtcgtaggtggggggtggatgctgccaccgaggctcgcatt
cgcacccggtccagcttcaaccgcgtcatgcatgggttccataatgtgga
gtttttctcacaacctaataagggaagaacctcttggtatgtggcccgac
ctgaatggtggaatgcctatgaggtaccgatgtcgcttagcgtcccaacc
ccaccggtattggcttacttcgggagctacatcacccgtaaccacgatcg
gtattacctcatttggtcgattgccctcgcggaatgggccgtattggtgg
ccatcttggctctgcaggctgcccgtgacggtattgactgggattgtcgt
tctcgagaagccgagatttaccgtgacggtgtgcaacctcctggtcgtat
gttcttcattcccccgagggtcattcgcaacattcgcctatttggaatcg
gaaccattgtggcaggtacggactactctatcgagcagctggaatcgttg
cttacccaagtggagagtttcccgtggggagccaagcaggggtgggaggt
tttcgatccggtgtcctggaaggttgtatcccgcgcggagcagcgctatc
ccggggctccgaccgatcagggacctccagggagtcccgagccattccca
accgtggtggaatcgccagcagctacccctgtggtcacttcagcgcctac
tcccgctccagagggacgcaatacgcctgcccatactggtgccactcctc
ttctccctagtaccacacgggttgatgggcctccgcgggctatcctcggg
ggtgtcatggctgcggctgcggcgcctgtcccctctcaggtggactccca
ggccatttcaggtttaatggctcgggtccgccaagcctgtgtggtgaact
tccagcgggcgggtcctacctctgtggtcgaagctcttacccttctggaa
agcatcctgcctcgtcatgcacagtacatgcgatccttttcccaaattgg
tgagttccggaaccggttccaggtcgagctctaccagatggctaccaacc
aggtggcaggcctagcgacggccatgggcccgacgcctacaaaccctttg
gaggatcccctatttggtgctagcctgaaccccggccttctagccgctac
gcaggctcctctccacatcgggtcgtcggcacctccgtcggttgcgcagg
cgagcgcgccacctccgatgggtgccgacgtgatgccaggcgtcagcgtg
cctactagtacccccgtgggtcatggtagcgcgcctagccaggctccagg
ccaggctcacctcttccagccttggccgggagcccatcagaacaccactc
cgggtcggggatcctcagctggaggctcctcggggcctcactttgccact
cacccatcaggttga

Coding sequence (CDS) from alignment at tig00000844_pilon:470510..472924+

>Ggra1564.t1 ID=Ggra1564.t1|Name=Ggra1564.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2415bp|location=Sequence derived from alignment at tig00000844_pilon:470510..472924+ (Gracilaria gracilis GNS1m male)
atggtgacccccgatccttatttgaaccacatgggtagccctggtaccag
cgtgcgggctcgcacccgtagcggtacacggcgattgtcggttccccatg
ttggtcaatcggacgcggtaacctcaagggacggcgcgccatcggcgacc
aatgccgatgccttaatggttgaaccagcatggggccccgaacgggtgga
ggttttgagcatcagctctagtgactcacccattgtggataaaaagccga
ttcgcttcacccctgcggtcgaatgctcgccgtctcaaccactccctcgc
ggtactcatcacaccatgtcgggtgccggtccctcgcgcggccgcggaag
cggcattgccaagtctggttctcggggtgctgctttgtaccattcccgca
tccaaactggttttcggagccagccggttccgtcttcctcaaatcaacct
caagggattcacgaagggatccgggacccgtatggtccggagcccgagat
tcctcgtggtatttcctattatggtttggagccgttcaccacggccgact
ggaacgtgtcccaacatggtaccttcggggtcgatccgagaatggtgtcg
caagcgacgctgtaccgtcggaactggccagtggcgccggggaacacatc
gcttcccggcgtcttgcgccgtccgactttggatacctacttgggtttgt
ttcgttgggattgcgagcgtctccgctccgtcccccaaacgctccaccgt
cgggataaggaatctcaacctcgtcagggtcgggtggagtgctatgacag
ccgccagcgacacacaccaatgaggtatttcatccccccgctttatcccg
gcgatctgccgtatgttcgtattgaaccggagctccattattaccgacgt
ctggttgtgaagatctgtcagtacgactcccttccgcagcagtaccttcc
ggcttcaccacatttggtttgcttcgataggccttacaataccatccatt
gggctaaccgtcgtaggtggggggtggatgctgccaccgaggctcgcatt
cgcacccggtccagcttcaaccgcgtcatgcatgggttccataatgtgga
gtttttctcacaacctaataagggaagaacctcttggtatgtggcccgac
ctgaatggtggaatgcctatgaggtaccgatgtcgcttagcgtcccaacc
ccaccggtattggcttacttcgggagctacatcacccgtaaccacgatcg
gtattacctcatttggtcgattgccctcgcggaatgggccgtattggtgg
ccatcttggctctgcaggctgcccgtgacggtattgactgggattgtcgt
tctcgagaagccgagatttaccgtgacggtgtgcaacctcctggtcgtat
gttcttcattcccccgagggtcattcgcaacattcgcctatttggaatcg
gaaccattgtggcaggtacggactactctatcgagcagctggaatcgttg
cttacccaagtggagagtttcccgtggggagccaagcaggggtgggaggt
tttcgatccggtgtcctggaaggttgtatcccgcgcggagcagcgctatc
ccggggctccgaccgatcagggacctccagggagtcccgagccattccca
accgtggtggaatcgccagcagctacccctgtggtcacttcagcgcctac
tcccgctccagagggacgcaatacgcctgcccatactggtgccactcctc
ttctccctagtaccacacgggttgatgggcctccgcgggctatcctcggg
ggtgtcatggctgcggctgcggcgcctgtcccctctcaggtggactccca
ggccatttcaggtttaatggctcgggtccgccaagcctgtgtggtgaact
tccagcgggcgggtcctacctctgtggtcgaagctcttacccttctggaa
agcatcctgcctcgtcatgcacagtacatgcgatccttttcccaaattgg
tgagttccggaaccggttccaggtcgagctctaccagatggctaccaacc
aggtggcaggcctagcgacggccatgggcccgacgcctacaaaccctttg
gaggatcccctatttggtgctagcctgaaccccggccttctagccgctac
gcaggctcctctccacatcgggtcgtcggcacctccgtcggttgcgcagg
cgagcgcgccacctccgatgggtgccgacgtgatgccaggcgtcagcgtg
cctactagtacccccgtgggtcatggtagcgcgcctagccaggctccagg
ccaggctcacctcttccagccttggccgggagcccatcagaacaccactc
cgggtcggggatcctcagctggaggctcctcggggcctcactttgccact
cacccatcaggttga