Ggra1563.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1563.t1
Unique NameGgra1563.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:468182..469237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15704247
PFAMsRVT_1
Max annot lvl33154|Opisthokonta
Evalue0.000119
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1563Ggra1563Gracilaria gracilis GNS1m malegenetig00000844_pilon 468182..469237 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1563.t1.stop1Ggra1563.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 468182..468184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1563.t1.CDS1Ggra1563.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 468182..469237 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1563.t1.exon1Ggra1563.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 468182..469237 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1563.t1.start1Ggra1563.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 469235..469237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1563.t1Ggra1563.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 468182..469237 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1563.t1 ID=Ggra1563.t1|Name=Ggra1563.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MAAWSLINSQIQQALQPFAVVPSHFMRLAQIANVIKDSYALSHEFAFDSL
TARADENGSIAKLQHLYQDAIIDHLASLNAPPRTETYTHRLQRARLKSVS
TVEASLCFTSFIHPTSNPSPAPEIMKTMIDLRLGERLFSNTTCMSCAGSN
AVSVPLLDPLGYHAMVCPVGLGATRRHNALRDVFYNCLKQPPLCLQVSRE
WKFPSQQHLDENAQWRMDLLIDDIRFHAKPIGVDVTVVSPGSRNYTLAAS
RNAAAAATKAEALKRTKYDAICADNNVQFVPFAFDVHGGLGDSAKQFARR
IAEYVSSVRGSNPITEYHTLALRLERTVLQLTAAAVNRRRWTLSTQAHAT
A*
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spliced messenger RNA

>Ggra1563.t1 ID=Ggra1563.t1|Name=Ggra1563.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000844_pilon:468182..469237- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCCTGGTCATTAATCAACTCCCAGATACAGCAAGCTCTCCAGCC
ATTTGCGGTGGTACCCTCTCACTTCATGCGTTTGGCGCAAATCGCCAATG
TCATCAAAGACTCGTACGCGCTGTCACACGAATTTGCGTTCGACTCTTTG
ACAGCCAGAGCGGACGAGAATGGCAGCATCGCCAAGTTGCAGCATTTGTA
TCAAGATGCGATCATAGATCACTTAGCTTCACTGAACGCCCCTCCCCGAA
CGGAGACCTACACTCATCGTCTCCAACGTGCGCGCCTCAAATCTGTCTCC
ACAGTAGAGGCGTCGCTTTGTTTTACTTCTTTCATCCATCCCACATCAAA
CCCGTCACCAGCTCCAGAAATCATGAAAACCATGATAGATCTTCGTCTTG
GCGAAAGACTTTTCTCCAACACAACCTGTATGTCATGCGCTGGATCAAAC
GCCGTCTCCGTTCCACTGTTAGATCCACTGGGTTACCATGCTATGGTATG
CCCAGTAGGACTAGGTGCCACCCGACGCCATAACGCCCTTCGAGATGTGT
TCTACAACTGCTTGAAACAACCTCCTCTTTGCCTGCAAGTCTCCAGAGAA
TGGAAGTTTCCATCCCAGCAGCACCTTGACGAAAACGCTCAGTGGCGAAT
GGACTTGCTCATTGACGATATAAGATTTCATGCGAAACCCATCGGCGTTG
ATGTTACAGTGGTGAGCCCGGGTAGCCGCAATTACACCCTCGCAGCATCA
CGAAACGCAGCGGCGGCTGCAACGAAAGCCGAAGCTTTAAAGCGCACCAA
ATACGACGCAATCTGCGCGGATAACAACGTTCAGTTTGTCCCCTTTGCGT
TTGACGTTCATGGAGGCCTTGGAGACTCCGCAAAACAGTTCGCCCGCCGC
ATAGCTGAGTACGTTAGCAGTGTACGTGGGTCTAACCCGATCACCGAGTA
CCACACGCTGGCCCTACGCCTCGAACGAACCGTTCTTCAGCTAACAGCCG
CTGCCGTAAACCGGCGACGCTGGACGCTGTCCACCCAGGCACACGCAACT
GCGTGA
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protein sequence of Ggra1563.t1

>Ggra1563.t1 ID=Ggra1563.t1|Name=Ggra1563.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MAAWSLINSQIQQALQPFAVVPSHFMRLAQIANVIKDSYALSHEFAFDSL
TARADENGSIAKLQHLYQDAIIDHLASLNAPPRTETYTHRLQRARLKSVS
TVEASLCFTSFIHPTSNPSPAPEIMKTMIDLRLGERLFSNTTCMSCAGSN
AVSVPLLDPLGYHAMVCPVGLGATRRHNALRDVFYNCLKQPPLCLQVSRE
WKFPSQQHLDENAQWRMDLLIDDIRFHAKPIGVDVTVVSPGSRNYTLAAS
RNAAAAATKAEALKRTKYDAICADNNVQFVPFAFDVHGGLGDSAKQFARR
IAEYVSSVRGSNPITEYHTLALRLERTVLQLTAAAVNRRRWTLSTQAHAT
A*
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mRNA from alignment at tig00000844_pilon:468182..469237-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1563.t1 ID=Ggra1563.t1|Name=Ggra1563.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000844_pilon:468182..469237- (Gracilaria gracilis GNS1m male)
ATGGCAGCCTGGTCATTAATCAACTCCCAGATACAGCAAGCTCTCCAGCC
ATTTGCGGTGGTACCCTCTCACTTCATGCGTTTGGCGCAAATCGCCAATG
TCATCAAAGACTCGTACGCGCTGTCACACGAATTTGCGTTCGACTCTTTG
ACAGCCAGAGCGGACGAGAATGGCAGCATCGCCAAGTTGCAGCATTTGTA
TCAAGATGCGATCATAGATCACTTAGCTTCACTGAACGCCCCTCCCCGAA
CGGAGACCTACACTCATCGTCTCCAACGTGCGCGCCTCAAATCTGTCTCC
ACAGTAGAGGCGTCGCTTTGTTTTACTTCTTTCATCCATCCCACATCAAA
CCCGTCACCAGCTCCAGAAATCATGAAAACCATGATAGATCTTCGTCTTG
GCGAAAGACTTTTCTCCAACACAACCTGTATGTCATGCGCTGGATCAAAC
GCCGTCTCCGTTCCACTGTTAGATCCACTGGGTTACCATGCTATGGTATG
CCCAGTAGGACTAGGTGCCACCCGACGCCATAACGCCCTTCGAGATGTGT
TCTACAACTGCTTGAAACAACCTCCTCTTTGCCTGCAAGTCTCCAGAGAA
TGGAAGTTTCCATCCCAGCAGCACCTTGACGAAAACGCTCAGTGGCGAAT
GGACTTGCTCATTGACGATATAAGATTTCATGCGAAACCCATCGGCGTTG
ATGTTACAGTGGTGAGCCCGGGTAGCCGCAATTACACCCTCGCAGCATCA
CGAAACGCAGCGGCGGCTGCAACGAAAGCCGAAGCTTTAAAGCGCACCAA
ATACGACGCAATCTGCGCGGATAACAACGTTCAGTTTGTCCCCTTTGCGT
TTGACGTTCATGGAGGCCTTGGAGACTCCGCAAAACAGTTCGCCCGCCGC
ATAGCTGAGTACGTTAGCAGTGTACGTGGGTCTAACCCGATCACCGAGTA
CCACACGCTGGCCCTACGCCTCGAACGAACCGTTCTTCAGCTAACAGCCG
CTGCCGTAAACCGGCGACGCTGGACGCTGTCCACCCAGGCACACGCAACT
GCGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:468182..469237-

>Ggra1563.t1 ID=Ggra1563.t1|Name=Ggra1563.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000844_pilon:468182..469237- (Gracilaria gracilis GNS1m male)
ATGGCAGCCTGGTCATTAATCAACTCCCAGATACAGCAAGCTCTCCAGCC
ATTTGCGGTGGTACCCTCTCACTTCATGCGTTTGGCGCAAATCGCCAATG
TCATCAAAGACTCGTACGCGCTGTCACACGAATTTGCGTTCGACTCTTTG
ACAGCCAGAGCGGACGAGAATGGCAGCATCGCCAAGTTGCAGCATTTGTA
TCAAGATGCGATCATAGATCACTTAGCTTCACTGAACGCCCCTCCCCGAA
CGGAGACCTACACTCATCGTCTCCAACGTGCGCGCCTCAAATCTGTCTCC
ACAGTAGAGGCGTCGCTTTGTTTTACTTCTTTCATCCATCCCACATCAAA
CCCGTCACCAGCTCCAGAAATCATGAAAACCATGATAGATCTTCGTCTTG
GCGAAAGACTTTTCTCCAACACAACCTGTATGTCATGCGCTGGATCAAAC
GCCGTCTCCGTTCCACTGTTAGATCCACTGGGTTACCATGCTATGGTATG
CCCAGTAGGACTAGGTGCCACCCGACGCCATAACGCCCTTCGAGATGTGT
TCTACAACTGCTTGAAACAACCTCCTCTTTGCCTGCAAGTCTCCAGAGAA
TGGAAGTTTCCATCCCAGCAGCACCTTGACGAAAACGCTCAGTGGCGAAT
GGACTTGCTCATTGACGATATAAGATTTCATGCGAAACCCATCGGCGTTG
ATGTTACAGTGGTGAGCCCGGGTAGCCGCAATTACACCCTCGCAGCATCA
CGAAACGCAGCGGCGGCTGCAACGAAAGCCGAAGCTTTAAAGCGCACCAA
ATACGACGCAATCTGCGCGGATAACAACGTTCAGTTTGTCCCCTTTGCGT
TTGACGTTCATGGAGGCCTTGGAGACTCCGCAAAACAGTTCGCCCGCCGC
ATAGCTGAGTACGTTAGCAGTGTACGTGGGTCTAACCCGATCACCGAGTA
CCACACGCTGGCCCTACGCCTCGAACGAACCGTTCTTCAGCTAACAGCCG
CTGCCGTAAACCGGCGACGCTGGACGCTGTCCACCCAGGCACACGCAACT
GCGTGA
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