Ggra1556.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1556.t1
Unique NameGgra1556.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:456153..456575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5011.R4XAK6
PFAMsMAPEG
Max annot lvl4751|Fungi
Evalue5.14e-09
EggNOG OGs2E07R@1|root,2S7P4@2759|Eukaryota,3A961@33154|Opisthokonta,3P6QZ@4751|Fungi,3QWXE@4890|Ascomycota
DescriptionMAPEG family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1556Ggra1556Gracilaria gracilis GNS1m malegenetig00000844_pilon 456153..456575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1556.t1.stop1Ggra1556.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 456153..456155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1556.t1.CDS1Ggra1556.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 456153..456575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1556.t1.exon1Ggra1556.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 456153..456575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1556.t1.start1Ggra1556.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 456573..456575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1556.t1Ggra1556.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 456153..456575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1556.t1 ID=Ggra1556.t1|Name=Ggra1556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MPFSWPFFSVIVATALAYVPYFTRVVLLRKFGKFDNTAPRDYDGQFRSLA
KDKQALAKRLMGCHINQIEMLGVYAAGVAVNLSSRRNDSILIAITALYVV
FRIAYIAAYAGPQYLGGYVRSGMFVGSMVMIMLLWVRAAF*
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spliced messenger RNA

>Ggra1556.t1 ID=Ggra1556.t1|Name=Ggra1556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000844_pilon:456153..456575- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTCTCCTGGCCATTCTTCTCAGTCATCGTGGCAACCGCTCTGGC
ATACGTTCCATATTTCACTCGAGTAGTGCTTCTTCGCAAGTTTGGCAAGT
TTGATAACACTGCTCCAAGAGATTATGATGGACAATTCCGGTCTTTGGCG
AAAGATAAACAGGCTTTGGCAAAACGTTTGATGGGATGTCATATTAACCA
AATCGAAATGCTTGGCGTGTATGCTGCGGGCGTAGCCGTAAATCTTTCGT
CCCGTCGCAATGATTCTATACTGATTGCTATCACTGCCCTCTATGTCGTA
TTTCGTATCGCATATATCGCTGCGTACGCTGGACCCCAGTATTTGGGTGG
ATACGTAAGATCGGGCATGTTTGTTGGAAGCATGGTAATGATCATGTTAC
TGTGGGTTAGGGCTGCTTTTTGA
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protein sequence of Ggra1556.t1

>Ggra1556.t1 ID=Ggra1556.t1|Name=Ggra1556.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MPFSWPFFSVIVATALAYVPYFTRVVLLRKFGKFDNTAPRDYDGQFRSLA
KDKQALAKRLMGCHINQIEMLGVYAAGVAVNLSSRRNDSILIAITALYVV
FRIAYIAAYAGPQYLGGYVRSGMFVGSMVMIMLLWVRAAF*
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mRNA from alignment at tig00000844_pilon:456153..456575-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1556.t1 ID=Ggra1556.t1|Name=Ggra1556.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000844_pilon:456153..456575- (Gracilaria gracilis GNS1m male)
ATGCCTTTCTCCTGGCCATTCTTCTCAGTCATCGTGGCAACCGCTCTGGC
ATACGTTCCATATTTCACTCGAGTAGTGCTTCTTCGCAAGTTTGGCAAGT
TTGATAACACTGCTCCAAGAGATTATGATGGACAATTCCGGTCTTTGGCG
AAAGATAAACAGGCTTTGGCAAAACGTTTGATGGGATGTCATATTAACCA
AATCGAAATGCTTGGCGTGTATGCTGCGGGCGTAGCCGTAAATCTTTCGT
CCCGTCGCAATGATTCTATACTGATTGCTATCACTGCCCTCTATGTCGTA
TTTCGTATCGCATATATCGCTGCGTACGCTGGACCCCAGTATTTGGGTGG
ATACGTAAGATCGGGCATGTTTGTTGGAAGCATGGTAATGATCATGTTAC
TGTGGGTTAGGGCTGCTTTTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:456153..456575-

>Ggra1556.t1 ID=Ggra1556.t1|Name=Ggra1556.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000844_pilon:456153..456575- (Gracilaria gracilis GNS1m male)
ATGCCTTTCTCCTGGCCATTCTTCTCAGTCATCGTGGCAACCGCTCTGGC
ATACGTTCCATATTTCACTCGAGTAGTGCTTCTTCGCAAGTTTGGCAAGT
TTGATAACACTGCTCCAAGAGATTATGATGGACAATTCCGGTCTTTGGCG
AAAGATAAACAGGCTTTGGCAAAACGTTTGATGGGATGTCATATTAACCA
AATCGAAATGCTTGGCGTGTATGCTGCGGGCGTAGCCGTAAATCTTTCGT
CCCGTCGCAATGATTCTATACTGATTGCTATCACTGCCCTCTATGTCGTA
TTTCGTATCGCATATATCGCTGCGTACGCTGGACCCCAGTATTTGGGTGG
ATACGTAAGATCGGGCATGTTTGTTGGAAGCATGGTAATGATCATGTTAC
TGTGGGTTAGGGCTGCTTTTTGA
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