Ggra1550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1550.t1
Unique NameGgra1550.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:432422..433644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1550Ggra1550Gracilaria gracilis GNS1m malegenetig00000844_pilon 432422..433644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1550.t1Ggra1550.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 432422..433644 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1550.t1.stop1Ggra1550.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 432422..432424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1550.t1.CDS1Ggra1550.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 432422..432624 -
Ggra1550.t1.CDS2Ggra1550.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 432854..433119 -
Ggra1550.t1.CDS3Ggra1550.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 433266..433572 -
Ggra1550.t1.CDS4Ggra1550.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000844_pilon 433620..433644 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1550.t1.exon1Ggra1550.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 432422..432624 -
Ggra1550.t1.exon2Ggra1550.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 432854..433119 -
Ggra1550.t1.exon3Ggra1550.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 433266..433572 -
Ggra1550.t1.exon4Ggra1550.t1.exon4Gracilaria gracilis GNS1m maleexontig00000844_pilon 433620..433644 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1550.t1.intron1Ggra1550.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 432625..432853 -
Ggra1550.t1.intron2Ggra1550.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 433120..433265 -
Ggra1550.t1.intron3Ggra1550.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000844_pilon 433573..433619 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1550.t1.start1Ggra1550.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 433642..433644 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1550.t1 ID=Ggra1550.t1|Name=Ggra1550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MERSITYQLELPDVQRQHIEVELRGAQLRITGRRFKSGEVVVEEHEEDTE
QNDDSGVKMAEGKKASLEYELQIKVGESTDEAGIKAEHRDGILKILIPLK
TTTVARKISITTVAHGRNTNGEAVEEAASSASTQTDPLPRLTNHPPMKEE
LRVSGKQLEQLGADQRELLSQFDSLTKLCDDFLSKEKREDFEETAEPSTV
LEELRSEEAEMRSLMNFMAREGSAADKNKLLTQRNTAVIENLLNDCANIG
IRNGNAVVRGKSLVLG*
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spliced messenger RNA

>Ggra1550.t1 ID=Ggra1550.t1|Name=Ggra1550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000844_pilon:432422..433644- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCAGCATCACGTACCAACTGGAGTTGCCCGATGTCCAGCGTCA
ACACATCGAAGTTGAGCTTCGTGGAGCACAGCTGCGCATCACTGGACGGC
GCTTCAAGTCGGGCGAGGTGGTGGTTGAGGAACACGAGGAGGACACTGAG
CAGAACGACGACAGTGGGGTGAAGATGGCGGAAGGAAAGAAGGCTAGTTT
GGAGTACGAGTTACAGATTAAGGTGGGTGAGAGTACGGATGAAGCAGGAA
TCAAGGCTGAGCACAGGGATGGGATTCTGAAGATATTGATTCCTCTGAAG
ACGACGACTGTCGCCCGAAAGATTTCTATCACTACGGTTGCACACGGGCG
GAATACCAATGGTGAGGCCGTCGAAGAAGCAGCGTCATCTGCTTCAACGC
AAACAGATCCGTTGCCACGGCTGACAAACCATCCTCCTATGAAGGAGGAG
CTTCGGGTCTCGGGGAAACAACTGGAGCAACTAGGAGCTGATCAACGAGA
GCTTCTCAGTCAATTTGACTCGCTCACCAAACTGTGTGACGATTTCTTGT
CCAAGGAGAAACGCGAAGACTTTGAAGAGACTGCTGAGCCCTCAACGGTG
TTGGAGGAACTGCGTAGTGAGGAAGCGGAAATGAGGTCGTTGATGAACTT
CATGGCTCGTGAGGGATCTGCGGCTGACAAGAACAAGTTGCTCACACAGA
GGAACACGGCGGTTATTGAAAACTTGTTGAACGACTGTGCAAACATTGGG
ATTCGAAATGGCAATGCCGTTGTGAGAGGGAAGTCTCTGGTGCTTGGATG
A
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protein sequence of Ggra1550.t1

>Ggra1550.t1 ID=Ggra1550.t1|Name=Ggra1550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MERSITYQLELPDVQRQHIEVELRGAQLRITGRRFKSGEVVVEEHEEDTE
QNDDSGVKMAEGKKASLEYELQIKVGESTDEAGIKAEHRDGILKILIPLK
TTTVARKISITTVAHGRNTNGEAVEEAASSASTQTDPLPRLTNHPPMKEE
LRVSGKQLEQLGADQRELLSQFDSLTKLCDDFLSKEKREDFEETAEPSTV
LEELRSEEAEMRSLMNFMAREGSAADKNKLLTQRNTAVIENLLNDCANIG
IRNGNAVVRGKSLVLG*
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mRNA from alignment at tig00000844_pilon:432422..433644-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1550.t1 ID=Ggra1550.t1|Name=Ggra1550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1223bp|location=Sequence derived from alignment at tig00000844_pilon:432422..433644- (Gracilaria gracilis GNS1m male)
ATGGAACGCAGCATCACGTACCAACGTACGAGTAACTTTATCGTCGACAA
CAGGATAACATCCATCTGAAAGTGGAGTTGCCCGATGTCCAGCGTCAACA
CATCGAAGTTGAGCTTCGTGGAGCACAGCTGCGCATCACTGGACGGCGCT
TCAAGTCGGGCGAGGTGGTGGTTGAGGAACACGAGGAGGACACTGAGCAG
AACGACGACAGTGGGGTGAAGATGGCGGAAGGAAAGAAGGCTAGTTTGGA
GTACGAGTTACAGATTAAGGTGGGTGAGAGTACGGATGAAGCAGGAATCA
AGGCTGAGCACAGGGATGGGATTCTGAAGATATTGATTCCTCTGAAGACG
ACGACTGTCGCCCGAAAGATTTCTATCACGTAGGGCTTTCGACTGTGTGC
GTAAAGATAATTTGTTCGTTTATGAATAGCTTAGATGTATATGGATTGCA
GAATAAAGAGATGTTTGGTTTGATGGTTTCGTGACGAAGCACAGCTCACT
TCTCGAGGAATTTTGCGCGATATAGTACGGTTGCACACGGGCGGAATACC
AATGGTGAGGCCGTCGAAGAAGCAGCGTCATCTGCTTCAACGCAAACAGA
TCCGTTGCCACGGCTGACAAACCATCCTCCTATGAAGGAGGAGCTTCGGG
TCTCGGGGAAACAACTGGAGCAACTAGGAGCTGATCAACGAGAGCTTCTC
AGTCAATTTGACTCGCTCACCAAACTGTGTGACGATTTCTTGTCCAAGGA
GAAACGCGAAGACTTTGAAGAGACTGCTGAGCCCTCAACGGGTTCTTCAA
ATTTTGTCTGAAGAAAGAAACGGAAATGTGTTTGCGAAAACATACGCATC
GTCACTGGGCGGAAACAAGAAAAGAGGTGTTGACCAAGCACACATATTTC
GCTCGACAGTTTTGGACGCAGCATATATCGGAGTTGGAGAAACTAGAGGA
GGCACGCGACCAGTTCGCTTTTTTTCCCTTTAGGTTCAAGATGTACGGGC
GTATGTTCATTTTGCAACAGTGTTGGAGGAACTGCGTAGTGAGGAAGCGG
AAATGAGGTCGTTGATGAACTTCATGGCTCGTGAGGGATCTGCGGCTGAC
AAGAACAAGTTGCTCACACAGAGGAACACGGCGGTTATTGAAAACTTGTT
GAACGACTGTGCAAACATTGGGATTCGAAATGGCAATGCCGTTGTGAGAG
GGAAGTCTCTGGTGCTTGGATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:432422..433644-

>Ggra1550.t1 ID=Ggra1550.t1|Name=Ggra1550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000844_pilon:432422..433644- (Gracilaria gracilis GNS1m male)
ATGGAACGCAGCATCACGTACCAACTGGAGTTGCCCGATGTCCAGCGTCA
ACACATCGAAGTTGAGCTTCGTGGAGCACAGCTGCGCATCACTGGACGGC
GCTTCAAGTCGGGCGAGGTGGTGGTTGAGGAACACGAGGAGGACACTGAG
CAGAACGACGACAGTGGGGTGAAGATGGCGGAAGGAAAGAAGGCTAGTTT
GGAGTACGAGTTACAGATTAAGGTGGGTGAGAGTACGGATGAAGCAGGAA
TCAAGGCTGAGCACAGGGATGGGATTCTGAAGATATTGATTCCTCTGAAG
ACGACGACTGTCGCCCGAAAGATTTCTATCACTACGGTTGCACACGGGCG
GAATACCAATGGTGAGGCCGTCGAAGAAGCAGCGTCATCTGCTTCAACGC
AAACAGATCCGTTGCCACGGCTGACAAACCATCCTCCTATGAAGGAGGAG
CTTCGGGTCTCGGGGAAACAACTGGAGCAACTAGGAGCTGATCAACGAGA
GCTTCTCAGTCAATTTGACTCGCTCACCAAACTGTGTGACGATTTCTTGT
CCAAGGAGAAACGCGAAGACTTTGAAGAGACTGCTGAGCCCTCAACGGTG
TTGGAGGAACTGCGTAGTGAGGAAGCGGAAATGAGGTCGTTGATGAACTT
CATGGCTCGTGAGGGATCTGCGGCTGACAAGAACAAGTTGCTCACACAGA
GGAACACGGCGGTTATTGAAAACTTGTTGAACGACTGTGCAAACATTGGG
ATTCGAAATGGCAATGCCGTTGTGAGAGGGAAGTCTCTGGTGCTTGGATG
A
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