Ggra1538.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1538.t1
Unique Name	Ggra1538.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:404399..405895 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1538	Ggra1538	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 404399..405895 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1538.t1.stop1	Ggra1538.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 404399..404401 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1538.t1.CDS1	Ggra1538.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 404399..405895 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1538.t1.exon1	Ggra1538.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 404399..405895 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1538.t1.start1	Ggra1538.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 405893..405895 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1538.t1	Ggra1538.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 404399..405895 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:404399..405895-
coding sequence from alignment at tig00000844_pilon:404399..405895-

mRNA sequence

>Ggra1538.t1 ID=Ggra1538.t1|Name=Ggra1538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp
MKHPIANAVIPTIAAVVGVSAARFYYVEKIKSLKFESLKNLSFVKHDNVR
LTKIIQHRERELTKVSLALRESEQESCVLRRNCLNAKDQNDEMVQELQKI
RNEKTVFVEELRDAKEQNIVVAKELRDVKKQNIVVAKELRDVKKQNIVLV
KQLRDVKGQKNNAVKQLRDAEDQNVIAAKELRDVKEQNTNIAKKLRDARD
QKSIAAKELQDVQARNNIAVKQIRDVKKLNTIAVKALQDVEAQNANAAKE
FQVLKEQHFKAIKELQNTRNQVQRTEGKLKHVKEQLLNSNNRIRNLEWEK
EKRNNLRTRVLEKEKGEATQRARSAEKSKQGWKEEKNVWGGRNETLMKIA
EFRGEERKDTELEDARRATENEGNKRLESDMEALRTENMSLRTIIAMRSE
HAHAYVNAIRQLHDYLTDQNQEIATLKSRKAELVQMFREAQLYFARLQSE
LSQAREQSIRLVRKLEAINEENDKIQNAQNPHEGLLKQNPEGSDQWSF*

spliced messenger RNA

>Ggra1538.t1 ID=Ggra1538.t1|Name=Ggra1538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000844_pilon:404399..405895- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACACCCTATCGCGAATGCCGTCATACCGACGATTGCTGCTGTTGT
TGGAGTATCCGCAGCCCGGTTCTACTATGTCGAGAAGATAAAGTCTCTCA
AATTCGAAAGCTTGAAGAATCTTAGTTTTGTCAAGCATGACAACGTGCGC
CTAACGAAGATCATACAACACCGTGAAAGAGAGCTTACAAAAGTTTCACT
AGCTCTTAGAGAATCAGAGCAAGAGAGCTGTGTGCTGCGCCGCAACTGCT
TAAACGCCAAAGACCAAAACGATGAGATGGTACAGGAACTTCAGAAAATC
AGAAACGAGAAAACTGTGTTTGTGGAAGAGCTTCGAGATGCCAAGGAGCA
AAACATTGTTGTTGCGAAAGAGCTTCGAGATGTCAAGAAGCAAAACATTG
TTGTTGCGAAAGAGCTTCGAGATGTCAAGAAGCAAAACATTGTTCTTGTG
AAGCAGCTTCGAGATGTGAAAGGGCAAAAGAATAATGCTGTGAAACAGCT
TCGAGATGCCGAAGATCAGAACGTAATTGCTGCGAAAGAGCTTCGAGATG
TGAAAGAGCAGAACACTAACATTGCAAAAAAGCTTCGAGATGCCAGAGAT
CAGAAATCAATTGCCGCGAAAGAGCTTCAAGATGTCCAAGCGCGCAACAA
CATAGCTGTGAAACAGATTCGAGATGTCAAAAAGCTGAACACCATTGCTG
TAAAAGCGCTTCAAGATGTCGAAGCGCAAAATGCCAATGCTGCGAAAGAG
TTTCAAGTTCTTAAAGAACAACACTTTAAAGCGATAAAAGAGCTCCAGAA
CACCAGAAACCAAGTACAAAGAACCGAAGGCAAACTCAAGCATGTCAAAG
AGCAGCTACTGAACTCCAACAATCGAATCAGGAATCTCGAATGGGAGAAA
GAAAAGCGAAACAACTTGCGAACAAGAGTCCTTGAGAAGGAAAAGGGAGA
GGCCACACAGAGAGCCAGAAGTGCTGAAAAGTCAAAACAGGGATGGAAGG
AGGAAAAGAATGTCTGGGGAGGAAGGAATGAGACTTTGATGAAAATCGCG
GAGTTTCGTGGAGAAGAAAGGAAGGATACAGAACTTGAGGATGCAAGAAG
GGCAACAGAAAACGAAGGAAACAAACGACTGGAGAGTGACATGGAAGCAC
TGAGAACGGAAAACATGAGCTTGCGAACGATTATAGCTATGCGGAGTGAG
CATGCCCATGCGTATGTGAACGCAATCAGGCAGCTACACGATTATCTAAC
AGACCAGAATCAGGAGATTGCAACTCTCAAAAGCAGGAAAGCGGAACTGG
TGCAAATGTTTCGTGAAGCTCAACTATACTTTGCTCGACTGCAGTCCGAG
CTTTCGCAGGCAAGAGAACAATCAATTCGTCTTGTCAGGAAACTGGAGGC
TATTAATGAAGAGAATGATAAGATTCAGAACGCCCAAAACCCCCATGAAG
GTCTCCTGAAGCAAAACCCCGAAGGAAGCGATCAATGGTCCTTTTGA

protein sequence of Ggra1538.t1

>Ggra1538.t1 ID=Ggra1538.t1|Name=Ggra1538.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=499bp
MKHPIANAVIPTIAAVVGVSAARFYYVEKIKSLKFESLKNLSFVKHDNVR
LTKIIQHRERELTKVSLALRESEQESCVLRRNCLNAKDQNDEMVQELQKI
RNEKTVFVEELRDAKEQNIVVAKELRDVKKQNIVVAKELRDVKKQNIVLV
KQLRDVKGQKNNAVKQLRDAEDQNVIAAKELRDVKEQNTNIAKKLRDARD
QKSIAAKELQDVQARNNIAVKQIRDVKKLNTIAVKALQDVEAQNANAAKE
FQVLKEQHFKAIKELQNTRNQVQRTEGKLKHVKEQLLNSNNRIRNLEWEK
EKRNNLRTRVLEKEKGEATQRARSAEKSKQGWKEEKNVWGGRNETLMKIA
EFRGEERKDTELEDARRATENEGNKRLESDMEALRTENMSLRTIIAMRSE
HAHAYVNAIRQLHDYLTDQNQEIATLKSRKAELVQMFREAQLYFARLQSE
LSQAREQSIRLVRKLEAINEENDKIQNAQNPHEGLLKQNPEGSDQWSF*

mRNA from alignment at tig00000844_pilon:404399..405895-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1538.t1 ID=Ggra1538.t1|Name=Ggra1538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000844_pilon:404399..405895- (Gracilaria gracilis GNS1m male)
ATGAAACACCCTATCGCGAATGCCGTCATACCGACGATTGCTGCTGTTGT
TGGAGTATCCGCAGCCCGGTTCTACTATGTCGAGAAGATAAAGTCTCTCA
AATTCGAAAGCTTGAAGAATCTTAGTTTTGTCAAGCATGACAACGTGCGC
CTAACGAAGATCATACAACACCGTGAAAGAGAGCTTACAAAAGTTTCACT
AGCTCTTAGAGAATCAGAGCAAGAGAGCTGTGTGCTGCGCCGCAACTGCT
TAAACGCCAAAGACCAAAACGATGAGATGGTACAGGAACTTCAGAAAATC
AGAAACGAGAAAACTGTGTTTGTGGAAGAGCTTCGAGATGCCAAGGAGCA
AAACATTGTTGTTGCGAAAGAGCTTCGAGATGTCAAGAAGCAAAACATTG
TTGTTGCGAAAGAGCTTCGAGATGTCAAGAAGCAAAACATTGTTCTTGTG
AAGCAGCTTCGAGATGTGAAAGGGCAAAAGAATAATGCTGTGAAACAGCT
TCGAGATGCCGAAGATCAGAACGTAATTGCTGCGAAAGAGCTTCGAGATG
TGAAAGAGCAGAACACTAACATTGCAAAAAAGCTTCGAGATGCCAGAGAT
CAGAAATCAATTGCCGCGAAAGAGCTTCAAGATGTCCAAGCGCGCAACAA
CATAGCTGTGAAACAGATTCGAGATGTCAAAAAGCTGAACACCATTGCTG
TAAAAGCGCTTCAAGATGTCGAAGCGCAAAATGCCAATGCTGCGAAAGAG
TTTCAAGTTCTTAAAGAACAACACTTTAAAGCGATAAAAGAGCTCCAGAA
CACCAGAAACCAAGTACAAAGAACCGAAGGCAAACTCAAGCATGTCAAAG
AGCAGCTACTGAACTCCAACAATCGAATCAGGAATCTCGAATGGGAGAAA
GAAAAGCGAAACAACTTGCGAACAAGAGTCCTTGAGAAGGAAAAGGGAGA
GGCCACACAGAGAGCCAGAAGTGCTGAAAAGTCAAAACAGGGATGGAAGG
AGGAAAAGAATGTCTGGGGAGGAAGGAATGAGACTTTGATGAAAATCGCG
GAGTTTCGTGGAGAAGAAAGGAAGGATACAGAACTTGAGGATGCAAGAAG
GGCAACAGAAAACGAAGGAAACAAACGACTGGAGAGTGACATGGAAGCAC
TGAGAACGGAAAACATGAGCTTGCGAACGATTATAGCTATGCGGAGTGAG
CATGCCCATGCGTATGTGAACGCAATCAGGCAGCTACACGATTATCTAAC
AGACCAGAATCAGGAGATTGCAACTCTCAAAAGCAGGAAAGCGGAACTGG
TGCAAATGTTTCGTGAAGCTCAACTATACTTTGCTCGACTGCAGTCCGAG
CTTTCGCAGGCAAGAGAACAATCAATTCGTCTTGTCAGGAAACTGGAGGC
TATTAATGAAGAGAATGATAAGATTCAGAACGCCCAAAACCCCCATGAAG
GTCTCCTGAAGCAAAACCCCGAAGGAAGCGATCAATGGTCCTTTTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:404399..405895-

>Ggra1538.t1 ID=Ggra1538.t1|Name=Ggra1538.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00000844_pilon:404399..405895- (Gracilaria gracilis GNS1m male)
ATGAAACACCCTATCGCGAATGCCGTCATACCGACGATTGCTGCTGTTGT
TGGAGTATCCGCAGCCCGGTTCTACTATGTCGAGAAGATAAAGTCTCTCA
AATTCGAAAGCTTGAAGAATCTTAGTTTTGTCAAGCATGACAACGTGCGC
CTAACGAAGATCATACAACACCGTGAAAGAGAGCTTACAAAAGTTTCACT
AGCTCTTAGAGAATCAGAGCAAGAGAGCTGTGTGCTGCGCCGCAACTGCT
TAAACGCCAAAGACCAAAACGATGAGATGGTACAGGAACTTCAGAAAATC
AGAAACGAGAAAACTGTGTTTGTGGAAGAGCTTCGAGATGCCAAGGAGCA
AAACATTGTTGTTGCGAAAGAGCTTCGAGATGTCAAGAAGCAAAACATTG
TTGTTGCGAAAGAGCTTCGAGATGTCAAGAAGCAAAACATTGTTCTTGTG
AAGCAGCTTCGAGATGTGAAAGGGCAAAAGAATAATGCTGTGAAACAGCT
TCGAGATGCCGAAGATCAGAACGTAATTGCTGCGAAAGAGCTTCGAGATG
TGAAAGAGCAGAACACTAACATTGCAAAAAAGCTTCGAGATGCCAGAGAT
CAGAAATCAATTGCCGCGAAAGAGCTTCAAGATGTCCAAGCGCGCAACAA
CATAGCTGTGAAACAGATTCGAGATGTCAAAAAGCTGAACACCATTGCTG
TAAAAGCGCTTCAAGATGTCGAAGCGCAAAATGCCAATGCTGCGAAAGAG
TTTCAAGTTCTTAAAGAACAACACTTTAAAGCGATAAAAGAGCTCCAGAA
CACCAGAAACCAAGTACAAAGAACCGAAGGCAAACTCAAGCATGTCAAAG
AGCAGCTACTGAACTCCAACAATCGAATCAGGAATCTCGAATGGGAGAAA
GAAAAGCGAAACAACTTGCGAACAAGAGTCCTTGAGAAGGAAAAGGGAGA
GGCCACACAGAGAGCCAGAAGTGCTGAAAAGTCAAAACAGGGATGGAAGG
AGGAAAAGAATGTCTGGGGAGGAAGGAATGAGACTTTGATGAAAATCGCG
GAGTTTCGTGGAGAAGAAAGGAAGGATACAGAACTTGAGGATGCAAGAAG
GGCAACAGAAAACGAAGGAAACAAACGACTGGAGAGTGACATGGAAGCAC
TGAGAACGGAAAACATGAGCTTGCGAACGATTATAGCTATGCGGAGTGAG
CATGCCCATGCGTATGTGAACGCAATCAGGCAGCTACACGATTATCTAAC
AGACCAGAATCAGGAGATTGCAACTCTCAAAAGCAGGAAAGCGGAACTGG
TGCAAATGTTTCGTGAAGCTCAACTATACTTTGCTCGACTGCAGTCCGAG
CTTTCGCAGGCAAGAGAACAATCAATTCGTCTTGTCAGGAAACTGGAGGC
TATTAATGAAGAGAATGATAAGATTCAGAACGCCCAAAACCCCCATGAAG
GTCTCCTGAAGCAAAACCCCGAAGGAAGCGATCAATGGTCCTTTTGA