Ggra1528.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1528.t1
Unique Name	Ggra1528.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:323016..324887 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G4S8
PFAMs	DEAD,Helicase_C
Max annot lvl	2759\|Eukaryota
Evalue	9.61e-80
EggNOG OGs	COG0513@1\|root,KOG0327@2759\|Eukaryota
Description	helicase activity
COG category	JKL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1528	Ggra1528	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 323016..324887 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1528.t1.stop1	Ggra1528.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 323016..323018 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1528.t1.CDS1	Ggra1528.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 323016..324887 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1528.t1.exon1	Ggra1528.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 323016..324887 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1528.t1.start1	Ggra1528.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 324885..324887 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1528.t1	Ggra1528.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 323016..324887 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:323016..324887-
coding sequence from alignment at tig00000844_pilon:323016..324887-

mRNA sequence

>Ggra1528.t1 ID=Ggra1528.t1|Name=Ggra1528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp
MLVEDDAETVESIGEDEVDGEDEAEGEDEAEGDGEGWDDWYTVIDRISKE
DEVASLTMASNEGDDAIFDLGAVDDNSRKLLTRRCYAGVVDIDIEEGGVL
SEDEDNNDMFCGVGLEALVESEDLVENLKKNFGITTATHVQLAAIPRVTD
GKDIVIQSHTGSGKTLAFLLPVLDEMDVELESTQVLIVAPTRELAMQISR
ECDRLIEGTDIRNLALIGGANPARQVEKLRKKQPHIVVGTPGRLAELHEA
RHLNLRHMQTLVVDEVDQCLQDAFLNHITYLLRATGRAQKVLVSATGDVD
SVRNFAVSNLKEPVLLRVGGSQRIPKTIFHWHYLVPARLRIDALRKLMYS
EPVPQRAIVFVNDPRRVDIVVQRLHQMKVAAGALRGNAHKLERAEVLTAF
RKGRVNMLVTTEVAARGLDVREITHVINLEMPTDGDHYLHRAGRCGRIGG
EGHVISITNSETAFVVTRLARELGIEITRMEPRGGAYRVPLDRSNFVKRG
KDGGMESRQAKDEKTAAQVKKRAQYQKIASSMDKPKRKKVKEELRKSEAK
ERVKTKLKAKEKGEMRAANRMKAKKKEGGPKEGGPKEGGPKEGGSKAETL
SAKEKRRMSVREIAQREGWVGNR*

spliced messenger RNA

>Ggra1528.t1 ID=Ggra1528.t1|Name=Ggra1528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000844_pilon:323016..324887- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTTGAAGATGATGCTGAAACAGTCGAAAGCATAGGCGAAGACGA
GGTCGACGGCGAGGACGAAGCGGAAGGCGAGGACGAAGCGGAAGGCGATG
GGGAAGGGTGGGATGACTGGTACACCGTAATTGACAGAATAAGTAAGGAA
GACGAGGTTGCCAGTCTGACCATGGCGTCGAATGAGGGTGATGATGCCAT
TTTTGACCTAGGAGCTGTGGATGACAACAGCAGGAAGCTACTCACCCGTA
GGTGCTACGCTGGTGTCGTAGACATTGATATTGAAGAAGGCGGTGTTCTT
TCTGAAGATGAGGATAATAATGACATGTTCTGCGGAGTGGGTCTTGAAGC
GCTTGTCGAGTCGGAAGATCTAGTTGAGAACTTGAAGAAGAACTTTGGCA
TCACCACCGCGACGCACGTCCAACTGGCGGCAATTCCCCGTGTGACGGAC
GGGAAAGATATTGTGATACAGAGTCACACTGGGTCTGGGAAGACCTTGGC
GTTCTTACTTCCAGTTTTGGATGAAATGGATGTTGAACTTGAGAGCACGC
AAGTGCTCATCGTGGCTCCTACACGAGAACTTGCAATGCAGATTTCACGT
GAGTGTGATCGATTAATTGAAGGTACTGATATTCGAAACCTGGCTTTGAT
TGGAGGTGCGAACCCTGCGAGACAAGTTGAAAAGCTACGCAAGAAACAAC
CGCACATAGTTGTGGGCACACCAGGGCGTCTTGCAGAACTGCACGAGGCA
AGACATCTGAATCTAAGACATATGCAGACACTCGTGGTCGATGAGGTTGA
TCAATGCCTACAGGACGCGTTTTTGAATCACATCACTTACTTGCTTCGCG
CGACTGGAAGAGCGCAGAAAGTACTTGTTTCCGCAACGGGGGACGTGGAT
TCCGTGCGCAACTTTGCCGTGTCAAACTTGAAAGAGCCGGTTCTACTTCG
AGTTGGTGGCTCACAAAGAATCCCCAAAACGATCTTTCACTGGCATTATC
TGGTACCGGCGCGTTTGCGAATCGACGCTCTGCGAAAGCTCATGTATTCA
GAGCCGGTTCCGCAAAGGGCAATCGTTTTCGTCAACGATCCACGAAGAGT
GGATATCGTGGTACAACGACTGCACCAGATGAAAGTGGCTGCCGGCGCCT
TGCGTGGAAACGCACACAAGCTCGAACGCGCAGAAGTGCTGACTGCATTC
AGGAAGGGGCGCGTGAACATGCTGGTGACAACTGAAGTTGCGGCTAGAGG
ATTGGATGTGCGTGAGATTACGCACGTGATCAATCTGGAGATGCCGACGG
ACGGGGATCATTACTTGCATCGGGCTGGGAGATGCGGACGCATTGGAGGT
GAGGGGCACGTGATAAGCATTACAAACTCTGAGACGGCGTTTGTGGTGAC
GCGATTGGCTCGTGAGCTGGGCATTGAAATCACGAGGATGGAACCGCGAG
GAGGAGCATATCGTGTGCCACTGGACAGAAGCAATTTTGTGAAGCGGGGG
AAGGACGGCGGCATGGAGTCGCGACAGGCCAAAGATGAGAAGACTGCGGC
ACAGGTGAAAAAGCGTGCTCAATATCAGAAGATAGCGAGCAGCATGGACA
AACCGAAGAGGAAGAAGGTGAAGGAGGAGCTGAGAAAAAGCGAGGCAAAA
GAAAGGGTGAAGACCAAGCTGAAAGCAAAGGAGAAGGGCGAGATGCGAGC
CGCCAACAGGATGAAAGCCAAGAAGAAGGAGGGCGGCCCCAAGGAGGGCG
GCCCCAAGGAGGGCGGCCCCAAGGAGGGCGGCTCCAAGGCGGAGACGCTG
AGCGCGAAAGAAAAGCGCAGGATGAGTGTCCGCGAAATAGCGCAGAGGGA
GGGCTGGGTGGGCAATCGCTGA

protein sequence of Ggra1528.t1

>Ggra1528.t1 ID=Ggra1528.t1|Name=Ggra1528.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MLVEDDAETVESIGEDEVDGEDEAEGEDEAEGDGEGWDDWYTVIDRISKE
DEVASLTMASNEGDDAIFDLGAVDDNSRKLLTRRCYAGVVDIDIEEGGVL
SEDEDNNDMFCGVGLEALVESEDLVENLKKNFGITTATHVQLAAIPRVTD
GKDIVIQSHTGSGKTLAFLLPVLDEMDVELESTQVLIVAPTRELAMQISR
ECDRLIEGTDIRNLALIGGANPARQVEKLRKKQPHIVVGTPGRLAELHEA
RHLNLRHMQTLVVDEVDQCLQDAFLNHITYLLRATGRAQKVLVSATGDVD
SVRNFAVSNLKEPVLLRVGGSQRIPKTIFHWHYLVPARLRIDALRKLMYS
EPVPQRAIVFVNDPRRVDIVVQRLHQMKVAAGALRGNAHKLERAEVLTAF
RKGRVNMLVTTEVAARGLDVREITHVINLEMPTDGDHYLHRAGRCGRIGG
EGHVISITNSETAFVVTRLARELGIEITRMEPRGGAYRVPLDRSNFVKRG
KDGGMESRQAKDEKTAAQVKKRAQYQKIASSMDKPKRKKVKEELRKSEAK
ERVKTKLKAKEKGEMRAANRMKAKKKEGGPKEGGPKEGGPKEGGSKAETL
SAKEKRRMSVREIAQREGWVGNR*

mRNA from alignment at tig00000844_pilon:323016..324887-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1528.t1 ID=Ggra1528.t1|Name=Ggra1528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000844_pilon:323016..324887- (Gracilaria gracilis GNS1m male)
ATGTTGGTTGAAGATGATGCTGAAACAGTCGAAAGCATAGGCGAAGACGA
GGTCGACGGCGAGGACGAAGCGGAAGGCGAGGACGAAGCGGAAGGCGATG
GGGAAGGGTGGGATGACTGGTACACCGTAATTGACAGAATAAGTAAGGAA
GACGAGGTTGCCAGTCTGACCATGGCGTCGAATGAGGGTGATGATGCCAT
TTTTGACCTAGGAGCTGTGGATGACAACAGCAGGAAGCTACTCACCCGTA
GGTGCTACGCTGGTGTCGTAGACATTGATATTGAAGAAGGCGGTGTTCTT
TCTGAAGATGAGGATAATAATGACATGTTCTGCGGAGTGGGTCTTGAAGC
GCTTGTCGAGTCGGAAGATCTAGTTGAGAACTTGAAGAAGAACTTTGGCA
TCACCACCGCGACGCACGTCCAACTGGCGGCAATTCCCCGTGTGACGGAC
GGGAAAGATATTGTGATACAGAGTCACACTGGGTCTGGGAAGACCTTGGC
GTTCTTACTTCCAGTTTTGGATGAAATGGATGTTGAACTTGAGAGCACGC
AAGTGCTCATCGTGGCTCCTACACGAGAACTTGCAATGCAGATTTCACGT
GAGTGTGATCGATTAATTGAAGGTACTGATATTCGAAACCTGGCTTTGAT
TGGAGGTGCGAACCCTGCGAGACAAGTTGAAAAGCTACGCAAGAAACAAC
CGCACATAGTTGTGGGCACACCAGGGCGTCTTGCAGAACTGCACGAGGCA
AGACATCTGAATCTAAGACATATGCAGACACTCGTGGTCGATGAGGTTGA
TCAATGCCTACAGGACGCGTTTTTGAATCACATCACTTACTTGCTTCGCG
CGACTGGAAGAGCGCAGAAAGTACTTGTTTCCGCAACGGGGGACGTGGAT
TCCGTGCGCAACTTTGCCGTGTCAAACTTGAAAGAGCCGGTTCTACTTCG
AGTTGGTGGCTCACAAAGAATCCCCAAAACGATCTTTCACTGGCATTATC
TGGTACCGGCGCGTTTGCGAATCGACGCTCTGCGAAAGCTCATGTATTCA
GAGCCGGTTCCGCAAAGGGCAATCGTTTTCGTCAACGATCCACGAAGAGT
GGATATCGTGGTACAACGACTGCACCAGATGAAAGTGGCTGCCGGCGCCT
TGCGTGGAAACGCACACAAGCTCGAACGCGCAGAAGTGCTGACTGCATTC
AGGAAGGGGCGCGTGAACATGCTGGTGACAACTGAAGTTGCGGCTAGAGG
ATTGGATGTGCGTGAGATTACGCACGTGATCAATCTGGAGATGCCGACGG
ACGGGGATCATTACTTGCATCGGGCTGGGAGATGCGGACGCATTGGAGGT
GAGGGGCACGTGATAAGCATTACAAACTCTGAGACGGCGTTTGTGGTGAC
GCGATTGGCTCGTGAGCTGGGCATTGAAATCACGAGGATGGAACCGCGAG
GAGGAGCATATCGTGTGCCACTGGACAGAAGCAATTTTGTGAAGCGGGGG
AAGGACGGCGGCATGGAGTCGCGACAGGCCAAAGATGAGAAGACTGCGGC
ACAGGTGAAAAAGCGTGCTCAATATCAGAAGATAGCGAGCAGCATGGACA
AACCGAAGAGGAAGAAGGTGAAGGAGGAGCTGAGAAAAAGCGAGGCAAAA
GAAAGGGTGAAGACCAAGCTGAAAGCAAAGGAGAAGGGCGAGATGCGAGC
CGCCAACAGGATGAAAGCCAAGAAGAAGGAGGGCGGCCCCAAGGAGGGCG
GCCCCAAGGAGGGCGGCCCCAAGGAGGGCGGCTCCAAGGCGGAGACGCTG
AGCGCGAAAGAAAAGCGCAGGATGAGTGTCCGCGAAATAGCGCAGAGGGA
GGGCTGGGTGGGCAATCGCTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:323016..324887-

>Ggra1528.t1 ID=Ggra1528.t1|Name=Ggra1528.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00000844_pilon:323016..324887- (Gracilaria gracilis GNS1m male)
ATGTTGGTTGAAGATGATGCTGAAACAGTCGAAAGCATAGGCGAAGACGA
GGTCGACGGCGAGGACGAAGCGGAAGGCGAGGACGAAGCGGAAGGCGATG
GGGAAGGGTGGGATGACTGGTACACCGTAATTGACAGAATAAGTAAGGAA
GACGAGGTTGCCAGTCTGACCATGGCGTCGAATGAGGGTGATGATGCCAT
TTTTGACCTAGGAGCTGTGGATGACAACAGCAGGAAGCTACTCACCCGTA
GGTGCTACGCTGGTGTCGTAGACATTGATATTGAAGAAGGCGGTGTTCTT
TCTGAAGATGAGGATAATAATGACATGTTCTGCGGAGTGGGTCTTGAAGC
GCTTGTCGAGTCGGAAGATCTAGTTGAGAACTTGAAGAAGAACTTTGGCA
TCACCACCGCGACGCACGTCCAACTGGCGGCAATTCCCCGTGTGACGGAC
GGGAAAGATATTGTGATACAGAGTCACACTGGGTCTGGGAAGACCTTGGC
GTTCTTACTTCCAGTTTTGGATGAAATGGATGTTGAACTTGAGAGCACGC
AAGTGCTCATCGTGGCTCCTACACGAGAACTTGCAATGCAGATTTCACGT
GAGTGTGATCGATTAATTGAAGGTACTGATATTCGAAACCTGGCTTTGAT
TGGAGGTGCGAACCCTGCGAGACAAGTTGAAAAGCTACGCAAGAAACAAC
CGCACATAGTTGTGGGCACACCAGGGCGTCTTGCAGAACTGCACGAGGCA
AGACATCTGAATCTAAGACATATGCAGACACTCGTGGTCGATGAGGTTGA
TCAATGCCTACAGGACGCGTTTTTGAATCACATCACTTACTTGCTTCGCG
CGACTGGAAGAGCGCAGAAAGTACTTGTTTCCGCAACGGGGGACGTGGAT
TCCGTGCGCAACTTTGCCGTGTCAAACTTGAAAGAGCCGGTTCTACTTCG
AGTTGGTGGCTCACAAAGAATCCCCAAAACGATCTTTCACTGGCATTATC
TGGTACCGGCGCGTTTGCGAATCGACGCTCTGCGAAAGCTCATGTATTCA
GAGCCGGTTCCGCAAAGGGCAATCGTTTTCGTCAACGATCCACGAAGAGT
GGATATCGTGGTACAACGACTGCACCAGATGAAAGTGGCTGCCGGCGCCT
TGCGTGGAAACGCACACAAGCTCGAACGCGCAGAAGTGCTGACTGCATTC
AGGAAGGGGCGCGTGAACATGCTGGTGACAACTGAAGTTGCGGCTAGAGG
ATTGGATGTGCGTGAGATTACGCACGTGATCAATCTGGAGATGCCGACGG
ACGGGGATCATTACTTGCATCGGGCTGGGAGATGCGGACGCATTGGAGGT
GAGGGGCACGTGATAAGCATTACAAACTCTGAGACGGCGTTTGTGGTGAC
GCGATTGGCTCGTGAGCTGGGCATTGAAATCACGAGGATGGAACCGCGAG
GAGGAGCATATCGTGTGCCACTGGACAGAAGCAATTTTGTGAAGCGGGGG
AAGGACGGCGGCATGGAGTCGCGACAGGCCAAAGATGAGAAGACTGCGGC
ACAGGTGAAAAAGCGTGCTCAATATCAGAAGATAGCGAGCAGCATGGACA
AACCGAAGAGGAAGAAGGTGAAGGAGGAGCTGAGAAAAAGCGAGGCAAAA
GAAAGGGTGAAGACCAAGCTGAAAGCAAAGGAGAAGGGCGAGATGCGAGC
CGCCAACAGGATGAAAGCCAAGAAGAAGGAGGGCGGCCCCAAGGAGGGCG
GCCCCAAGGAGGGCGGCCCCAAGGAGGGCGGCTCCAAGGCGGAGACGCTG
AGCGCGAAAGAAAAGCGCAGGATGAGTGTCCGCGAAATAGCGCAGAGGGA
GGGCTGGGTGGGCAATCGCTGA