Ggra1512.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1512.t1
Unique Name	Ggra1512.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	461

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:291843..293225 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1279017.AQYJ01000029_gene3508
Max annot lvl	1224\|Proteobacteria
Evalue	2.7e-38
EggNOG OGs	2F92Y@1\|root,341EJ@2\|Bacteria,1NYJZ@1224\|Proteobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1512	Ggra1512	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 291843..293225 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1512.t1.start1	Ggra1512.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 291843..291845 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1512.t1.CDS1	Ggra1512.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 291843..293225 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1512.t1.exon1	Ggra1512.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 291843..293225 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1512.t1.stop1	Ggra1512.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 293223..293225 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1512.t1	Ggra1512.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 291843..293225 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:291843..293225+
coding sequence from alignment at tig00000844_pilon:291843..293225+

mRNA sequence

>Ggra1512.t1 ID=Ggra1512.t1|Name=Ggra1512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=461bp
MYVKSAIVGSDGDRGWPKTVQSRGSGCVRAPSLPRGVTACFYRSSSYDLP
KHIVDSFCTDDGNANAVSMLKHAVGNDACELTPTVAKVPCVTDNSDKLSD
PIEADDDVEPNEGPQCPVPSSPIELPTTITLDRIRRCRNKWFCNSVVTKA
EYHIFGAKKMSKKHQKKVYISQVNVPQKEKTKNIVFAVAGQQFDRPLKKE
GYSSGVTGQYQSYKKGFKKKVGSLQKGIDSNSLVSRIMRSGYFSLDDTFV
GLVFDARFNYEFSKKKKNRNENGYYHYLLQRLGNDVGTIYLAGHSRGGCL
VMRLASRLNAQFPKARIIVHNFDGVCTKPGFFASSEFGVSKSPTRANPLK
NGWFVYTTDMNERFSNRKCLSILSVLSGEQPVEVKLANGILKQFRAFGHR
GFATSSQLVENLEDEQGRVWYQELMNPFKHDQVDNTYHPYAASHLGNAMQ
SISCDCDAHN*

spliced messenger RNA

>Ggra1512.t1 ID=Ggra1512.t1|Name=Ggra1512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000844_pilon:291843..293225+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGTGAAATCAGCAATTGTGGGATCTGACGGAGATAGAGGATGGCC
GAAGACCGTTCAATCAAGGGGCAGCGGTTGTGTACGCGCACCGTCTCTCC
CAAGAGGTGTTACGGCATGTTTTTATAGAAGTTCTTCATATGATTTGCCG
AAGCACATTGTGGATAGTTTCTGCACGGATGATGGAAATGCAAACGCTGT
CTCTATGCTCAAACATGCAGTTGGAAATGATGCCTGTGAACTTACACCAA
CTGTCGCCAAGGTGCCATGCGTGACTGATAACTCCGATAAGCTCAGTGAC
CCTATAGAGGCTGATGACGACGTTGAGCCTAATGAAGGACCACAGTGTCC
GGTACCAAGTTCACCGATTGAGCTTCCAACTACCATAACTTTGGATCGCA
TTCGAAGGTGTAGAAACAAGTGGTTCTGCAATTCAGTAGTAACCAAAGCT
GAGTATCATATTTTTGGAGCAAAAAAGATGAGTAAGAAACATCAGAAAAA
GGTGTACATCTCTCAAGTGAATGTTCCACAAAAAGAGAAGACGAAGAACA
TTGTTTTCGCAGTTGCAGGACAGCAGTTTGACAGGCCCTTAAAAAAGGAA
GGTTATAGCAGTGGCGTAACCGGACAATACCAAAGTTACAAGAAAGGATT
CAAAAAAAAGGTTGGTTCGTTGCAAAAGGGAATCGATTCCAATAGCCTTG
TTTCACGCATTATGAGAAGTGGATACTTTTCATTGGATGACACCTTTGTT
GGACTTGTGTTCGATGCAAGATTCAATTACGAGTTTAGCAAGAAGAAAAA
GAATCGAAATGAAAATGGATACTATCACTACCTTTTGCAGCGCCTGGGAA
ATGATGTCGGAACAATTTATCTTGCTGGGCATAGTCGAGGTGGATGTCTA
GTGATGCGGCTGGCGTCACGATTAAATGCCCAGTTCCCAAAAGCAAGAAT
CATCGTTCATAACTTTGACGGTGTGTGCACTAAGCCTGGGTTTTTCGCAT
CAAGTGAGTTTGGTGTATCCAAATCGCCGACGCGGGCGAATCCTTTGAAA
AATGGATGGTTTGTATATACAACCGACATGAACGAACGCTTTAGCAACAG
AAAATGTTTGTCGATTCTAAGTGTTCTTTCCGGAGAGCAGCCTGTTGAGG
TCAAACTAGCAAATGGCATATTGAAGCAATTCCGTGCCTTTGGGCATCGG
GGATTTGCGACAAGCTCCCAGCTTGTTGAGAATTTAGAAGACGAGCAAGG
TCGGGTTTGGTATCAAGAACTGATGAATCCTTTTAAACATGATCAGGTGG
ATAATACATATCACCCTTACGCAGCATCTCATTTGGGAAATGCTATGCAA
TCAATTTCATGTGATTGTGATGCTCATAACTGA

protein sequence of Ggra1512.t1

>Ggra1512.t1 ID=Ggra1512.t1|Name=Ggra1512.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MYVKSAIVGSDGDRGWPKTVQSRGSGCVRAPSLPRGVTACFYRSSSYDLP
KHIVDSFCTDDGNANAVSMLKHAVGNDACELTPTVAKVPCVTDNSDKLSD
PIEADDDVEPNEGPQCPVPSSPIELPTTITLDRIRRCRNKWFCNSVVTKA
EYHIFGAKKMSKKHQKKVYISQVNVPQKEKTKNIVFAVAGQQFDRPLKKE
GYSSGVTGQYQSYKKGFKKKVGSLQKGIDSNSLVSRIMRSGYFSLDDTFV
GLVFDARFNYEFSKKKKNRNENGYYHYLLQRLGNDVGTIYLAGHSRGGCL
VMRLASRLNAQFPKARIIVHNFDGVCTKPGFFASSEFGVSKSPTRANPLK
NGWFVYTTDMNERFSNRKCLSILSVLSGEQPVEVKLANGILKQFRAFGHR
GFATSSQLVENLEDEQGRVWYQELMNPFKHDQVDNTYHPYAASHLGNAMQ
SISCDCDAHN*

mRNA from alignment at tig00000844_pilon:291843..293225+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1512.t1 ID=Ggra1512.t1|Name=Ggra1512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000844_pilon:291843..293225+ (Gracilaria gracilis GNS1m male)
ATGTATGTGAAATCAGCAATTGTGGGATCTGACGGAGATAGAGGATGGCC
GAAGACCGTTCAATCAAGGGGCAGCGGTTGTGTACGCGCACCGTCTCTCC
CAAGAGGTGTTACGGCATGTTTTTATAGAAGTTCTTCATATGATTTGCCG
AAGCACATTGTGGATAGTTTCTGCACGGATGATGGAAATGCAAACGCTGT
CTCTATGCTCAAACATGCAGTTGGAAATGATGCCTGTGAACTTACACCAA
CTGTCGCCAAGGTGCCATGCGTGACTGATAACTCCGATAAGCTCAGTGAC
CCTATAGAGGCTGATGACGACGTTGAGCCTAATGAAGGACCACAGTGTCC
GGTACCAAGTTCACCGATTGAGCTTCCAACTACCATAACTTTGGATCGCA
TTCGAAGGTGTAGAAACAAGTGGTTCTGCAATTCAGTAGTAACCAAAGCT
GAGTATCATATTTTTGGAGCAAAAAAGATGAGTAAGAAACATCAGAAAAA
GGTGTACATCTCTCAAGTGAATGTTCCACAAAAAGAGAAGACGAAGAACA
TTGTTTTCGCAGTTGCAGGACAGCAGTTTGACAGGCCCTTAAAAAAGGAA
GGTTATAGCAGTGGCGTAACCGGACAATACCAAAGTTACAAGAAAGGATT
CAAAAAAAAGGTTGGTTCGTTGCAAAAGGGAATCGATTCCAATAGCCTTG
TTTCACGCATTATGAGAAGTGGATACTTTTCATTGGATGACACCTTTGTT
GGACTTGTGTTCGATGCAAGATTCAATTACGAGTTTAGCAAGAAGAAAAA
GAATCGAAATGAAAATGGATACTATCACTACCTTTTGCAGCGCCTGGGAA
ATGATGTCGGAACAATTTATCTTGCTGGGCATAGTCGAGGTGGATGTCTA
GTGATGCGGCTGGCGTCACGATTAAATGCCCAGTTCCCAAAAGCAAGAAT
CATCGTTCATAACTTTGACGGTGTGTGCACTAAGCCTGGGTTTTTCGCAT
CAAGTGAGTTTGGTGTATCCAAATCGCCGACGCGGGCGAATCCTTTGAAA
AATGGATGGTTTGTATATACAACCGACATGAACGAACGCTTTAGCAACAG
AAAATGTTTGTCGATTCTAAGTGTTCTTTCCGGAGAGCAGCCTGTTGAGG
TCAAACTAGCAAATGGCATATTGAAGCAATTCCGTGCCTTTGGGCATCGG
GGATTTGCGACAAGCTCCCAGCTTGTTGAGAATTTAGAAGACGAGCAAGG
TCGGGTTTGGTATCAAGAACTGATGAATCCTTTTAAACATGATCAGGTGG
ATAATACATATCACCCTTACGCAGCATCTCATTTGGGAAATGCTATGCAA
TCAATTTCATGTGATTGTGATGCTCATAACTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:291843..293225+

>Ggra1512.t1 ID=Ggra1512.t1|Name=Ggra1512.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00000844_pilon:291843..293225+ (Gracilaria gracilis GNS1m male)
ATGTATGTGAAATCAGCAATTGTGGGATCTGACGGAGATAGAGGATGGCC
GAAGACCGTTCAATCAAGGGGCAGCGGTTGTGTACGCGCACCGTCTCTCC
CAAGAGGTGTTACGGCATGTTTTTATAGAAGTTCTTCATATGATTTGCCG
AAGCACATTGTGGATAGTTTCTGCACGGATGATGGAAATGCAAACGCTGT
CTCTATGCTCAAACATGCAGTTGGAAATGATGCCTGTGAACTTACACCAA
CTGTCGCCAAGGTGCCATGCGTGACTGATAACTCCGATAAGCTCAGTGAC
CCTATAGAGGCTGATGACGACGTTGAGCCTAATGAAGGACCACAGTGTCC
GGTACCAAGTTCACCGATTGAGCTTCCAACTACCATAACTTTGGATCGCA
TTCGAAGGTGTAGAAACAAGTGGTTCTGCAATTCAGTAGTAACCAAAGCT
GAGTATCATATTTTTGGAGCAAAAAAGATGAGTAAGAAACATCAGAAAAA
GGTGTACATCTCTCAAGTGAATGTTCCACAAAAAGAGAAGACGAAGAACA
TTGTTTTCGCAGTTGCAGGACAGCAGTTTGACAGGCCCTTAAAAAAGGAA
GGTTATAGCAGTGGCGTAACCGGACAATACCAAAGTTACAAGAAAGGATT
CAAAAAAAAGGTTGGTTCGTTGCAAAAGGGAATCGATTCCAATAGCCTTG
TTTCACGCATTATGAGAAGTGGATACTTTTCATTGGATGACACCTTTGTT
GGACTTGTGTTCGATGCAAGATTCAATTACGAGTTTAGCAAGAAGAAAAA
GAATCGAAATGAAAATGGATACTATCACTACCTTTTGCAGCGCCTGGGAA
ATGATGTCGGAACAATTTATCTTGCTGGGCATAGTCGAGGTGGATGTCTA
GTGATGCGGCTGGCGTCACGATTAAATGCCCAGTTCCCAAAAGCAAGAAT
CATCGTTCATAACTTTGACGGTGTGTGCACTAAGCCTGGGTTTTTCGCAT
CAAGTGAGTTTGGTGTATCCAAATCGCCGACGCGGGCGAATCCTTTGAAA
AATGGATGGTTTGTATATACAACCGACATGAACGAACGCTTTAGCAACAG
AAAATGTTTGTCGATTCTAAGTGTTCTTTCCGGAGAGCAGCCTGTTGAGG
TCAAACTAGCAAATGGCATATTGAAGCAATTCCGTGCCTTTGGGCATCGG
GGATTTGCGACAAGCTCCCAGCTTGTTGAGAATTTAGAAGACGAGCAAGG
TCGGGTTTGGTATCAAGAACTGATGAATCCTTTTAAACATGATCAGGTGG
ATAATACATATCACCCTTACGCAGCATCTCATTTGGGAAATGCTATGCAA
TCAATTTCATGTGATTGTGATGCTCATAACTGA