Ggra1508.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1508.t1
Unique NameGgra1508.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:280386..281807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709265.1
Preferred namekes1
PFAMsOxysterol_BP
Max annot lvl2759|Eukaryota
KEGG koko:K05012,ko:K20465,ko:K22285
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8,2.D.1.1
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005933,GO:0005935,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006892,GO:0006897,GO:0006914,GO:0007163,GO:0008142,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009893,GO:0009987,GO:0010562,GO:0010876,GO:0010921,GO:0010922,GO:0012505,GO:0015248,GO:0015850,GO:0015918,GO:0016020,GO:0016043,GO:0016192,GO:0016237,GO:0019220,GO:0019222,GO:0019898,GO:0030011,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031984,GO:0032365,GO:0032934,GO:0032940,GO:0033036,GO:0034727,GO:0035091,GO:0035303,GO:0035306,GO:0035621,GO:0035627,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045937,GO:0046903,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0065007,GO:0065009,GO:0070273,GO:0070300,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0120009,GO:0120011,GO:1901564,GO:1901981,GO:1902936
Evalue2.78e-93
EggNOG OGsKOG2210@1|root,KOG2210@2759|Eukaryota
Descriptionlipid transport
COG categoryP
BRITEko00000,ko02000,ko04040,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1508Ggra1508Gracilaria gracilis GNS1m malegenetig00000844_pilon 280386..281807 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1508.t1.stop1Ggra1508.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 280386..280388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1508.t1.CDS1Ggra1508.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 280386..281807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1508.t1.exon1Ggra1508.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 280386..281807 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1508.t1.start1Ggra1508.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 281805..281807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1508.t1Ggra1508.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 280386..281807 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1508.t1 ID=Ggra1508.t1|Name=Ggra1508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MSPPLTPPSPPLLAVDFISDEDAYFDARDTLSSSDRSSPRPPPMIPVRYS
RLQPLASPQPPPDAELSLFKLAKEVLTSVKPGADVTNINLPASILDPVST
LEKAKKSMQRGELLQDLCSCDDADARMLNIIRFNLSGLAKERFGKKPYNP
VLGEVYRCAFVHKANAGETLLVAEQVSHHPPITALHLHNDTLGFQLESHT
APEPRFWGNSLEVKLKGEIRIELSRYEDEQYVITRPYVYMSGFLAGRQRL
EFNGTSTFTCKRTGLGAEIEFHRAKGHLNSRVDMNAISGRVFKLASEETL
YTIDGHWDNKVNITCTKSKQQRVLFDYDAVVAEKSMVAVYPPLEDEEPSY
STRVWAECSAAINNADTAQANAQKRKVEDHQRRLKKERIAAGLAWNYRYF
VDRDDGDGYQLRPELRKQQLVKLMLQPHEVEGLRSGDLMRQMHAELMKDV
EAGDAKGRVGMRRKLLARSRNKA*
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spliced messenger RNA

>Ggra1508.t1 ID=Ggra1508.t1|Name=Ggra1508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000844_pilon:280386..281807- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGCCTCTCACACCGCCCAGCCCGCCCTTGCTCGCCGTCGACTT
CATCTCCGACGAGGACGCGTACTTCGACGCCAGGGACACGCTCTCGTCCT
CGGACCGCTCGTCGCCGCGCCCACCCCCAATGATCCCCGTGCGTTACTCG
CGTCTGCAGCCGTTGGCGTCGCCGCAGCCGCCGCCCGACGCCGAGCTCTC
GCTCTTCAAGCTCGCCAAGGAGGTGCTCACCAGTGTCAAGCCCGGCGCCG
ATGTCACCAATATCAACCTGCCTGCCAGCATTCTGGACCCCGTCTCCACG
CTGGAGAAGGCGAAAAAGTCCATGCAGCGCGGCGAACTGCTGCAGGACTT
GTGCAGCTGTGACGATGCGGACGCGCGCATGCTCAATATCATTCGCTTCA
ACCTGTCGGGGCTGGCCAAGGAGCGCTTCGGCAAGAAGCCGTACAACCCC
GTGTTGGGCGAGGTGTATCGCTGCGCCTTCGTGCACAAAGCCAACGCCGG
CGAGACGCTACTGGTGGCCGAACAGGTTTCGCATCACCCGCCCATCACCG
CGCTGCACCTGCACAACGACACGCTTGGCTTTCAGCTCGAGTCGCACACC
GCGCCGGAGCCCCGTTTCTGGGGCAACAGTCTGGAGGTGAAGCTCAAAGG
CGAGATCCGCATCGAACTCTCTCGCTACGAGGATGAGCAGTACGTTATCA
CGCGCCCTTATGTGTATATGAGTGGTTTTCTTGCTGGCCGACAACGGCTC
GAGTTCAACGGAACTTCCACCTTCACCTGCAAACGCACGGGACTGGGCGC
CGAGATTGAGTTCCACCGCGCGAAGGGCCACCTCAACTCACGCGTGGACA
TGAACGCCATCAGCGGTCGAGTTTTCAAACTTGCAAGCGAAGAAACTTTG
TATACCATTGATGGACACTGGGACAATAAGGTGAATATCACCTGCACGAA
GAGCAAGCAGCAACGCGTGCTATTCGACTACGACGCAGTGGTTGCTGAAA
AGTCTATGGTAGCCGTCTACCCGCCGCTGGAGGACGAAGAGCCTTCGTAC
AGCACACGTGTTTGGGCAGAGTGCTCGGCGGCAATTAACAACGCAGACAC
AGCTCAGGCAAACGCGCAGAAGCGCAAGGTGGAAGACCATCAGCGGCGGC
TCAAGAAGGAACGAATCGCTGCTGGACTGGCGTGGAACTACCGCTATTTT
GTGGACCGCGATGACGGCGACGGATACCAACTTCGACCGGAACTACGGAA
ACAACAACTGGTCAAGCTGATGCTACAGCCGCACGAAGTGGAGGGTTTGA
GATCGGGCGACTTGATGAGGCAAATGCATGCCGAGCTGATGAAGGACGTG
GAGGCGGGTGACGCCAAGGGACGCGTGGGAATGAGAAGAAAACTTCTGGC
GAGAAGTCGCAACAAGGCGTGA
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protein sequence of Ggra1508.t1

>Ggra1508.t1 ID=Ggra1508.t1|Name=Ggra1508.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MSPPLTPPSPPLLAVDFISDEDAYFDARDTLSSSDRSSPRPPPMIPVRYS
RLQPLASPQPPPDAELSLFKLAKEVLTSVKPGADVTNINLPASILDPVST
LEKAKKSMQRGELLQDLCSCDDADARMLNIIRFNLSGLAKERFGKKPYNP
VLGEVYRCAFVHKANAGETLLVAEQVSHHPPITALHLHNDTLGFQLESHT
APEPRFWGNSLEVKLKGEIRIELSRYEDEQYVITRPYVYMSGFLAGRQRL
EFNGTSTFTCKRTGLGAEIEFHRAKGHLNSRVDMNAISGRVFKLASEETL
YTIDGHWDNKVNITCTKSKQQRVLFDYDAVVAEKSMVAVYPPLEDEEPSY
STRVWAECSAAINNADTAQANAQKRKVEDHQRRLKKERIAAGLAWNYRYF
VDRDDGDGYQLRPELRKQQLVKLMLQPHEVEGLRSGDLMRQMHAELMKDV
EAGDAKGRVGMRRKLLARSRNKA*
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mRNA from alignment at tig00000844_pilon:280386..281807-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1508.t1 ID=Ggra1508.t1|Name=Ggra1508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000844_pilon:280386..281807- (Gracilaria gracilis GNS1m male)
ATGTCGCCGCCTCTCACACCGCCCAGCCCGCCCTTGCTCGCCGTCGACTT
CATCTCCGACGAGGACGCGTACTTCGACGCCAGGGACACGCTCTCGTCCT
CGGACCGCTCGTCGCCGCGCCCACCCCCAATGATCCCCGTGCGTTACTCG
CGTCTGCAGCCGTTGGCGTCGCCGCAGCCGCCGCCCGACGCCGAGCTCTC
GCTCTTCAAGCTCGCCAAGGAGGTGCTCACCAGTGTCAAGCCCGGCGCCG
ATGTCACCAATATCAACCTGCCTGCCAGCATTCTGGACCCCGTCTCCACG
CTGGAGAAGGCGAAAAAGTCCATGCAGCGCGGCGAACTGCTGCAGGACTT
GTGCAGCTGTGACGATGCGGACGCGCGCATGCTCAATATCATTCGCTTCA
ACCTGTCGGGGCTGGCCAAGGAGCGCTTCGGCAAGAAGCCGTACAACCCC
GTGTTGGGCGAGGTGTATCGCTGCGCCTTCGTGCACAAAGCCAACGCCGG
CGAGACGCTACTGGTGGCCGAACAGGTTTCGCATCACCCGCCCATCACCG
CGCTGCACCTGCACAACGACACGCTTGGCTTTCAGCTCGAGTCGCACACC
GCGCCGGAGCCCCGTTTCTGGGGCAACAGTCTGGAGGTGAAGCTCAAAGG
CGAGATCCGCATCGAACTCTCTCGCTACGAGGATGAGCAGTACGTTATCA
CGCGCCCTTATGTGTATATGAGTGGTTTTCTTGCTGGCCGACAACGGCTC
GAGTTCAACGGAACTTCCACCTTCACCTGCAAACGCACGGGACTGGGCGC
CGAGATTGAGTTCCACCGCGCGAAGGGCCACCTCAACTCACGCGTGGACA
TGAACGCCATCAGCGGTCGAGTTTTCAAACTTGCAAGCGAAGAAACTTTG
TATACCATTGATGGACACTGGGACAATAAGGTGAATATCACCTGCACGAA
GAGCAAGCAGCAACGCGTGCTATTCGACTACGACGCAGTGGTTGCTGAAA
AGTCTATGGTAGCCGTCTACCCGCCGCTGGAGGACGAAGAGCCTTCGTAC
AGCACACGTGTTTGGGCAGAGTGCTCGGCGGCAATTAACAACGCAGACAC
AGCTCAGGCAAACGCGCAGAAGCGCAAGGTGGAAGACCATCAGCGGCGGC
TCAAGAAGGAACGAATCGCTGCTGGACTGGCGTGGAACTACCGCTATTTT
GTGGACCGCGATGACGGCGACGGATACCAACTTCGACCGGAACTACGGAA
ACAACAACTGGTCAAGCTGATGCTACAGCCGCACGAAGTGGAGGGTTTGA
GATCGGGCGACTTGATGAGGCAAATGCATGCCGAGCTGATGAAGGACGTG
GAGGCGGGTGACGCCAAGGGACGCGTGGGAATGAGAAGAAAACTTCTGGC
GAGAAGTCGCAACAAGGCGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:280386..281807-

>Ggra1508.t1 ID=Ggra1508.t1|Name=Ggra1508.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000844_pilon:280386..281807- (Gracilaria gracilis GNS1m male)
ATGTCGCCGCCTCTCACACCGCCCAGCCCGCCCTTGCTCGCCGTCGACTT
CATCTCCGACGAGGACGCGTACTTCGACGCCAGGGACACGCTCTCGTCCT
CGGACCGCTCGTCGCCGCGCCCACCCCCAATGATCCCCGTGCGTTACTCG
CGTCTGCAGCCGTTGGCGTCGCCGCAGCCGCCGCCCGACGCCGAGCTCTC
GCTCTTCAAGCTCGCCAAGGAGGTGCTCACCAGTGTCAAGCCCGGCGCCG
ATGTCACCAATATCAACCTGCCTGCCAGCATTCTGGACCCCGTCTCCACG
CTGGAGAAGGCGAAAAAGTCCATGCAGCGCGGCGAACTGCTGCAGGACTT
GTGCAGCTGTGACGATGCGGACGCGCGCATGCTCAATATCATTCGCTTCA
ACCTGTCGGGGCTGGCCAAGGAGCGCTTCGGCAAGAAGCCGTACAACCCC
GTGTTGGGCGAGGTGTATCGCTGCGCCTTCGTGCACAAAGCCAACGCCGG
CGAGACGCTACTGGTGGCCGAACAGGTTTCGCATCACCCGCCCATCACCG
CGCTGCACCTGCACAACGACACGCTTGGCTTTCAGCTCGAGTCGCACACC
GCGCCGGAGCCCCGTTTCTGGGGCAACAGTCTGGAGGTGAAGCTCAAAGG
CGAGATCCGCATCGAACTCTCTCGCTACGAGGATGAGCAGTACGTTATCA
CGCGCCCTTATGTGTATATGAGTGGTTTTCTTGCTGGCCGACAACGGCTC
GAGTTCAACGGAACTTCCACCTTCACCTGCAAACGCACGGGACTGGGCGC
CGAGATTGAGTTCCACCGCGCGAAGGGCCACCTCAACTCACGCGTGGACA
TGAACGCCATCAGCGGTCGAGTTTTCAAACTTGCAAGCGAAGAAACTTTG
TATACCATTGATGGACACTGGGACAATAAGGTGAATATCACCTGCACGAA
GAGCAAGCAGCAACGCGTGCTATTCGACTACGACGCAGTGGTTGCTGAAA
AGTCTATGGTAGCCGTCTACCCGCCGCTGGAGGACGAAGAGCCTTCGTAC
AGCACACGTGTTTGGGCAGAGTGCTCGGCGGCAATTAACAACGCAGACAC
AGCTCAGGCAAACGCGCAGAAGCGCAAGGTGGAAGACCATCAGCGGCGGC
TCAAGAAGGAACGAATCGCTGCTGGACTGGCGTGGAACTACCGCTATTTT
GTGGACCGCGATGACGGCGACGGATACCAACTTCGACCGGAACTACGGAA
ACAACAACTGGTCAAGCTGATGCTACAGCCGCACGAAGTGGAGGGTTTGA
GATCGGGCGACTTGATGAGGCAAATGCATGCCGAGCTGATGAAGGACGTG
GAGGCGGGTGACGCCAAGGGACGCGTGGGAATGAGAAGAAAACTTCTGGC
GAGAAGTCGCAACAAGGCGTGA
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