Ggra1504.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1504.t1
Unique NameGgra1504.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:275233..275629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705559.1
Preferred nameCPN10
PFAMsCpn10
Max annot lvl2759|Eukaryota
KEGG koko:K04078
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0022607,GO:0030150,GO:0031974,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035966,GO:0042026,GO:0042221,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051131,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061077,GO:0065002,GO:0065003,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
Evalue4.74e-19
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1504Ggra1504Gracilaria gracilis GNS1m malegenetig00000844_pilon 275233..275629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1504.t1Ggra1504.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 275233..275629 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1504.t1.stop1Ggra1504.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 275233..275235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1504.t1.CDS1Ggra1504.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 275233..275266 -
Ggra1504.t1.CDS2Ggra1504.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 275354..275538 -
Ggra1504.t1.CDS3Ggra1504.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 275627..275629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1504.t1.exon1Ggra1504.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 275233..275266 -
Ggra1504.t1.exon2Ggra1504.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 275354..275538 -
Ggra1504.t1.exon3Ggra1504.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 275627..275629 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1504.t1.intron1Ggra1504.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 275267..275353 -
Ggra1504.t1.intron2Ggra1504.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 275539..275626 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1504.t1.start1Ggra1504.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 275627..275629 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1504.t1 ID=Ggra1504.t1|Name=Ggra1504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=74bp
MASRIVKRIVPLLDRVLIQKAVAEKTSRGGVILPESAVSKLNEGKVIAVG
PGARTTDGTLIQPDDELLGVIEH*
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spliced messenger RNA

>Ggra1504.t1 ID=Ggra1504.t1|Name=Ggra1504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000844_pilon:275233..275629- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCAGAATTGTGAAAAGAATCGTCCCCCTACTCGATCGGGTTCT
TATTCAGAAAGCAGTCGCAGAGAAGACTAGTCGCGGTGGCGTAATCTTGC
CCGAGTCTGCCGTCAGCAAACTGAATGAAGGAAAAGTGATTGCAGTTGGT
CCGGGCGCGAGGACTACCGATGGCACCTTGATTCAACCAGACGATGAACT
ATTGGGAGTCATCGAGCACTAG
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protein sequence of Ggra1504.t1

>Ggra1504.t1 ID=Ggra1504.t1|Name=Ggra1504.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=74bp
MASRIVKRIVPLLDRVLIQKAVAEKTSRGGVILPESAVSKLNEGKVIAVG
PGARTTDGTLIQPDDELLGVIEH*
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mRNA from alignment at tig00000844_pilon:275233..275629-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1504.t1 ID=Ggra1504.t1|Name=Ggra1504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=397bp|location=Sequence derived from alignment at tig00000844_pilon:275233..275629- (Gracilaria gracilis GNS1m male)
ATGGTACGTAAATCATCCTCTTTCCCTTCCCTCCCTTTTGATCTCCCTAT
GTTGTATCTCAGAAGCCTAACCGTCTTATACCCCTCAATAGGCTTCCAGA
ATTGTGAAAAGAATCGTCCCCCTACTCGATCGGGTTCTTATTCAGAAAGC
AGTCGCAGAGAAGACTAGTCGCGGTGGCGTAATCTTGCCCGAGTCTGCCG
TCAGCAAACTGAATGAAGGAAAAGTGATTGCAGTTGGTCCGGGCGCGAGG
ACTACCGATGGCACCTTGATTCAACCGTCTGTTAAGGAAGGGGATGATGT
CCTTTTGCCGGAATACGGTGGTTCAAAAGTAGTCGTCGACGGCAAAGACT
TCTTTTTGTATAGAGACGATGAACTATTGGGAGTCATCGAGCACTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:275233..275629-

>Ggra1504.t1 ID=Ggra1504.t1|Name=Ggra1504.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000844_pilon:275233..275629- (Gracilaria gracilis GNS1m male)
ATGGCTTCCAGAATTGTGAAAAGAATCGTCCCCCTACTCGATCGGGTTCT
TATTCAGAAAGCAGTCGCAGAGAAGACTAGTCGCGGTGGCGTAATCTTGC
CCGAGTCTGCCGTCAGCAAACTGAATGAAGGAAAAGTGATTGCAGTTGGT
CCGGGCGCGAGGACTACCGATGGCACCTTGATTCAACCAGACGATGAACT
ATTGGGAGTCATCGAGCACTAG
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