Ggra1502.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1502.t1
Unique Name	Ggra1502.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:265872..267935 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109871.XP_006681733.1
Preferred name	vid27
PFAMs	VID27
Max annot lvl	4751\|Fungi
KEGG ko	ko:K15445
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue	7.87e-88
EggNOG OGs	COG5167@1\|root,KOG2395@2759\|Eukaryota,38C12@33154\|Opisthokonta,3NX2R@4751\|Fungi
EC	2.1.1.221
Description	Vacuolar import and degRadation protein
COG category	U
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1502	Ggra1502	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 265872..267935 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1502.t1.stop1	Ggra1502.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 265872..265874 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1502.t1.CDS1	Ggra1502.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 265872..267935 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1502.t1.exon1	Ggra1502.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 265872..267935 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1502.t1.start1	Ggra1502.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 267933..267935 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1502.t1	Ggra1502.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 265872..267935 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:265872..267935-
coding sequence from alignment at tig00000844_pilon:265872..267935-

mRNA sequence

>Ggra1502.t1 ID=Ggra1502.t1|Name=Ggra1502.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=688bp
MLGRIFGFGQTPAYEGNEEVDPVIARADGSLYFTTLSSDGSYEQKVMYLL
CEATIRTTTKRFQSELFVSRANESADEGEIFPPDVIFPIDKSLTLESEEM
RLGWTDRAGKRYNLELEDESASTLFIQAAAIALFRNIHSREPSPEDEEEV
RTILNPPPKASVSDLLETRGELTRVEGELFKYDTERDQFRTMVPEVILSI
NSAVVKEDNSRAYLMIVYRADSGVRMLETEINNQMNAQFYSQTMSVVWVL
RLDSEAGDADSSDPQSQICLSVKFNNVEDFVTTRNQFSVCLYEVIHQASI
DDLKLKDDDMTYIEDTYRDDVEPMDVDEEEPDESDDRQIRESEENRRASI
SNDSDGMINSHLAVSANNDRTFVLRGDKMGVFATNDDGVMFRTTIKFKDQ
DTGSNFNPSNILLHERDQSMIVLDPNDPAKLRRMDLERGEIVDTWSGGLT
GHTPVKAVHRVNKYSNLTDTQEFVGLNKSQLMRMDPRTREFVVQSKRYAA
STRAKLECVATTGSGYLAVASENGDIRLYDQIGKNAKTHLPGLGDPIIGI
DVSEDGNYVLATTKKYLLVIDTRVKGSEKGGFQKSMGKKKPAPRKLTIKN
EDVVKYRMGEIQFTTAHFNTGSSLERSIVTSTGPFVVVWNFRAVKMGRLD
SYRIRRYQDNIIADDFAYDNDGRIVVTLPNDVSVARR*

spliced messenger RNA

>Ggra1502.t1 ID=Ggra1502.t1|Name=Ggra1502.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000844_pilon:265872..267935- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGAAGAATCTTTGGGTTTGGGCAGACGCCTGCGTATGAGGGAAA
TGAGGAAGTTGATCCTGTGATAGCCCGTGCAGACGGCTCCCTCTACTTCA
CCACCTTATCGAGCGATGGTTCATACGAGCAGAAAGTTATGTATCTATTG
TGTGAAGCAACTATTCGTACTACAACGAAAAGATTTCAGTCCGAACTGTT
TGTGTCGAGGGCCAATGAATCTGCGGACGAAGGTGAGATCTTCCCACCGG
ATGTGATTTTCCCTATCGATAAATCACTGACTTTGGAATCAGAAGAAATG
CGCCTGGGGTGGACTGATAGGGCTGGGAAAAGGTACAATCTTGAACTCGA
AGACGAATCCGCTTCTACATTGTTCATACAAGCCGCCGCAATCGCCTTGT
TTCGAAACATCCATTCGCGAGAACCGTCACCAGAGGACGAAGAAGAAGTT
CGTACCATTCTGAACCCTCCTCCGAAAGCAAGTGTATCTGATTTGTTGGA
GACGAGAGGGGAGCTAACAAGAGTCGAAGGAGAACTGTTCAAGTATGACA
CGGAGCGTGACCAGTTTCGGACCATGGTTCCCGAGGTTATACTTTCTATA
AATTCTGCCGTCGTTAAGGAGGACAATTCAAGGGCTTATCTGATGATCGT
TTACAGAGCCGATTCAGGCGTCAGAATGCTTGAGACGGAAATCAACAACC
AAATGAACGCCCAATTCTATTCTCAAACCATGTCAGTAGTTTGGGTACTT
CGGCTGGATTCCGAGGCCGGTGATGCTGATTCATCGGATCCTCAGTCTCA
GATATGTCTCTCTGTCAAGTTCAACAACGTAGAAGACTTTGTTACAACGA
GAAATCAGTTTTCTGTTTGCCTCTATGAAGTTATTCATCAGGCTTCAATT
GACGACCTCAAGCTTAAAGATGATGACATGACTTACATTGAAGACACCTA
TCGTGACGATGTCGAACCGATGGACGTAGATGAAGAGGAACCGGACGAAA
GTGATGACCGTCAGATACGGGAATCCGAAGAGAATCGCCGAGCATCAATT
TCAAACGACAGTGATGGAATGATCAATAGTCATCTCGCAGTGTCGGCCAA
CAACGATCGAACGTTTGTTCTTAGAGGCGACAAAATGGGGGTTTTTGCCA
CAAACGATGACGGGGTGATGTTTAGAACAACCATTAAGTTCAAGGATCAA
GATACCGGATCTAACTTCAATCCTTCGAACATTCTTCTGCATGAGAGGGA
TCAATCGATGATCGTACTCGATCCAAATGACCCGGCCAAACTGCGGAGAA
TGGATCTTGAACGAGGAGAAATCGTCGATACTTGGTCAGGAGGGCTTACA
GGTCATACTCCAGTTAAAGCAGTACACAGAGTCAATAAGTATTCGAATCT
GACAGACACACAAGAGTTTGTTGGACTCAACAAGAGCCAGCTGATGCGCA
TGGATCCACGAACGAGAGAATTTGTTGTGCAAAGTAAGCGATATGCTGCA
AGCACCAGGGCTAAATTAGAGTGCGTGGCGACCACAGGGTCCGGATATCT
TGCTGTTGCTTCGGAGAACGGGGATATCAGATTATATGATCAAATCGGAA
AGAACGCCAAGACGCACCTCCCAGGGCTTGGCGATCCGATAATTGGCATT
GACGTGTCGGAAGATGGCAACTATGTACTTGCGACCACTAAGAAGTACCT
GCTGGTTATTGACACTAGAGTGAAGGGTTCGGAGAAGGGAGGGTTTCAGA
AATCCATGGGTAAGAAGAAGCCGGCCCCCAGGAAACTCACAATCAAGAAT
GAAGATGTCGTAAAGTATAGAATGGGTGAAATCCAGTTCACTACAGCACA
TTTCAACACCGGCTCATCATTAGAAAGAAGCATCGTTACTAGCACAGGCC
CCTTTGTTGTTGTATGGAACTTCCGCGCAGTTAAGATGGGTCGGTTGGAC
AGCTACAGGATCAGAAGGTATCAAGACAACATTATTGCCGATGACTTTGC
TTACGACAACGATGGACGCATTGTGGTAACATTACCCAATGATGTGAGTG
TCGCCAGAAGGTAG

protein sequence of Ggra1502.t1

>Ggra1502.t1 ID=Ggra1502.t1|Name=Ggra1502.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=688bp
MLGRIFGFGQTPAYEGNEEVDPVIARADGSLYFTTLSSDGSYEQKVMYLL
CEATIRTTTKRFQSELFVSRANESADEGEIFPPDVIFPIDKSLTLESEEM
RLGWTDRAGKRYNLELEDESASTLFIQAAAIALFRNIHSREPSPEDEEEV
RTILNPPPKASVSDLLETRGELTRVEGELFKYDTERDQFRTMVPEVILSI
NSAVVKEDNSRAYLMIVYRADSGVRMLETEINNQMNAQFYSQTMSVVWVL
RLDSEAGDADSSDPQSQICLSVKFNNVEDFVTTRNQFSVCLYEVIHQASI
DDLKLKDDDMTYIEDTYRDDVEPMDVDEEEPDESDDRQIRESEENRRASI
SNDSDGMINSHLAVSANNDRTFVLRGDKMGVFATNDDGVMFRTTIKFKDQ
DTGSNFNPSNILLHERDQSMIVLDPNDPAKLRRMDLERGEIVDTWSGGLT
GHTPVKAVHRVNKYSNLTDTQEFVGLNKSQLMRMDPRTREFVVQSKRYAA
STRAKLECVATTGSGYLAVASENGDIRLYDQIGKNAKTHLPGLGDPIIGI
DVSEDGNYVLATTKKYLLVIDTRVKGSEKGGFQKSMGKKKPAPRKLTIKN
EDVVKYRMGEIQFTTAHFNTGSSLERSIVTSTGPFVVVWNFRAVKMGRLD
SYRIRRYQDNIIADDFAYDNDGRIVVTLPNDVSVARR*

mRNA from alignment at tig00000844_pilon:265872..267935-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1502.t1 ID=Ggra1502.t1|Name=Ggra1502.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000844_pilon:265872..267935- (Gracilaria gracilis GNS1m male)
ATGCTCGGAAGAATCTTTGGGTTTGGGCAGACGCCTGCGTATGAGGGAAA
TGAGGAAGTTGATCCTGTGATAGCCCGTGCAGACGGCTCCCTCTACTTCA
CCACCTTATCGAGCGATGGTTCATACGAGCAGAAAGTTATGTATCTATTG
TGTGAAGCAACTATTCGTACTACAACGAAAAGATTTCAGTCCGAACTGTT
TGTGTCGAGGGCCAATGAATCTGCGGACGAAGGTGAGATCTTCCCACCGG
ATGTGATTTTCCCTATCGATAAATCACTGACTTTGGAATCAGAAGAAATG
CGCCTGGGGTGGACTGATAGGGCTGGGAAAAGGTACAATCTTGAACTCGA
AGACGAATCCGCTTCTACATTGTTCATACAAGCCGCCGCAATCGCCTTGT
TTCGAAACATCCATTCGCGAGAACCGTCACCAGAGGACGAAGAAGAAGTT
CGTACCATTCTGAACCCTCCTCCGAAAGCAAGTGTATCTGATTTGTTGGA
GACGAGAGGGGAGCTAACAAGAGTCGAAGGAGAACTGTTCAAGTATGACA
CGGAGCGTGACCAGTTTCGGACCATGGTTCCCGAGGTTATACTTTCTATA
AATTCTGCCGTCGTTAAGGAGGACAATTCAAGGGCTTATCTGATGATCGT
TTACAGAGCCGATTCAGGCGTCAGAATGCTTGAGACGGAAATCAACAACC
AAATGAACGCCCAATTCTATTCTCAAACCATGTCAGTAGTTTGGGTACTT
CGGCTGGATTCCGAGGCCGGTGATGCTGATTCATCGGATCCTCAGTCTCA
GATATGTCTCTCTGTCAAGTTCAACAACGTAGAAGACTTTGTTACAACGA
GAAATCAGTTTTCTGTTTGCCTCTATGAAGTTATTCATCAGGCTTCAATT
GACGACCTCAAGCTTAAAGATGATGACATGACTTACATTGAAGACACCTA
TCGTGACGATGTCGAACCGATGGACGTAGATGAAGAGGAACCGGACGAAA
GTGATGACCGTCAGATACGGGAATCCGAAGAGAATCGCCGAGCATCAATT
TCAAACGACAGTGATGGAATGATCAATAGTCATCTCGCAGTGTCGGCCAA
CAACGATCGAACGTTTGTTCTTAGAGGCGACAAAATGGGGGTTTTTGCCA
CAAACGATGACGGGGTGATGTTTAGAACAACCATTAAGTTCAAGGATCAA
GATACCGGATCTAACTTCAATCCTTCGAACATTCTTCTGCATGAGAGGGA
TCAATCGATGATCGTACTCGATCCAAATGACCCGGCCAAACTGCGGAGAA
TGGATCTTGAACGAGGAGAAATCGTCGATACTTGGTCAGGAGGGCTTACA
GGTCATACTCCAGTTAAAGCAGTACACAGAGTCAATAAGTATTCGAATCT
GACAGACACACAAGAGTTTGTTGGACTCAACAAGAGCCAGCTGATGCGCA
TGGATCCACGAACGAGAGAATTTGTTGTGCAAAGTAAGCGATATGCTGCA
AGCACCAGGGCTAAATTAGAGTGCGTGGCGACCACAGGGTCCGGATATCT
TGCTGTTGCTTCGGAGAACGGGGATATCAGATTATATGATCAAATCGGAA
AGAACGCCAAGACGCACCTCCCAGGGCTTGGCGATCCGATAATTGGCATT
GACGTGTCGGAAGATGGCAACTATGTACTTGCGACCACTAAGAAGTACCT
GCTGGTTATTGACACTAGAGTGAAGGGTTCGGAGAAGGGAGGGTTTCAGA
AATCCATGGGTAAGAAGAAGCCGGCCCCCAGGAAACTCACAATCAAGAAT
GAAGATGTCGTAAAGTATAGAATGGGTGAAATCCAGTTCACTACAGCACA
TTTCAACACCGGCTCATCATTAGAAAGAAGCATCGTTACTAGCACAGGCC
CCTTTGTTGTTGTATGGAACTTCCGCGCAGTTAAGATGGGTCGGTTGGAC
AGCTACAGGATCAGAAGGTATCAAGACAACATTATTGCCGATGACTTTGC
TTACGACAACGATGGACGCATTGTGGTAACATTACCCAATGATGTGAGTG
TCGCCAGAAGGTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:265872..267935-

>Ggra1502.t1 ID=Ggra1502.t1|Name=Ggra1502.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2064bp|location=Sequence derived from alignment at tig00000844_pilon:265872..267935- (Gracilaria gracilis GNS1m male)
ATGCTCGGAAGAATCTTTGGGTTTGGGCAGACGCCTGCGTATGAGGGAAA
TGAGGAAGTTGATCCTGTGATAGCCCGTGCAGACGGCTCCCTCTACTTCA
CCACCTTATCGAGCGATGGTTCATACGAGCAGAAAGTTATGTATCTATTG
TGTGAAGCAACTATTCGTACTACAACGAAAAGATTTCAGTCCGAACTGTT
TGTGTCGAGGGCCAATGAATCTGCGGACGAAGGTGAGATCTTCCCACCGG
ATGTGATTTTCCCTATCGATAAATCACTGACTTTGGAATCAGAAGAAATG
CGCCTGGGGTGGACTGATAGGGCTGGGAAAAGGTACAATCTTGAACTCGA
AGACGAATCCGCTTCTACATTGTTCATACAAGCCGCCGCAATCGCCTTGT
TTCGAAACATCCATTCGCGAGAACCGTCACCAGAGGACGAAGAAGAAGTT
CGTACCATTCTGAACCCTCCTCCGAAAGCAAGTGTATCTGATTTGTTGGA
GACGAGAGGGGAGCTAACAAGAGTCGAAGGAGAACTGTTCAAGTATGACA
CGGAGCGTGACCAGTTTCGGACCATGGTTCCCGAGGTTATACTTTCTATA
AATTCTGCCGTCGTTAAGGAGGACAATTCAAGGGCTTATCTGATGATCGT
TTACAGAGCCGATTCAGGCGTCAGAATGCTTGAGACGGAAATCAACAACC
AAATGAACGCCCAATTCTATTCTCAAACCATGTCAGTAGTTTGGGTACTT
CGGCTGGATTCCGAGGCCGGTGATGCTGATTCATCGGATCCTCAGTCTCA
GATATGTCTCTCTGTCAAGTTCAACAACGTAGAAGACTTTGTTACAACGA
GAAATCAGTTTTCTGTTTGCCTCTATGAAGTTATTCATCAGGCTTCAATT
GACGACCTCAAGCTTAAAGATGATGACATGACTTACATTGAAGACACCTA
TCGTGACGATGTCGAACCGATGGACGTAGATGAAGAGGAACCGGACGAAA
GTGATGACCGTCAGATACGGGAATCCGAAGAGAATCGCCGAGCATCAATT
TCAAACGACAGTGATGGAATGATCAATAGTCATCTCGCAGTGTCGGCCAA
CAACGATCGAACGTTTGTTCTTAGAGGCGACAAAATGGGGGTTTTTGCCA
CAAACGATGACGGGGTGATGTTTAGAACAACCATTAAGTTCAAGGATCAA
GATACCGGATCTAACTTCAATCCTTCGAACATTCTTCTGCATGAGAGGGA
TCAATCGATGATCGTACTCGATCCAAATGACCCGGCCAAACTGCGGAGAA
TGGATCTTGAACGAGGAGAAATCGTCGATACTTGGTCAGGAGGGCTTACA
GGTCATACTCCAGTTAAAGCAGTACACAGAGTCAATAAGTATTCGAATCT
GACAGACACACAAGAGTTTGTTGGACTCAACAAGAGCCAGCTGATGCGCA
TGGATCCACGAACGAGAGAATTTGTTGTGCAAAGTAAGCGATATGCTGCA
AGCACCAGGGCTAAATTAGAGTGCGTGGCGACCACAGGGTCCGGATATCT
TGCTGTTGCTTCGGAGAACGGGGATATCAGATTATATGATCAAATCGGAA
AGAACGCCAAGACGCACCTCCCAGGGCTTGGCGATCCGATAATTGGCATT
GACGTGTCGGAAGATGGCAACTATGTACTTGCGACCACTAAGAAGTACCT
GCTGGTTATTGACACTAGAGTGAAGGGTTCGGAGAAGGGAGGGTTTCAGA
AATCCATGGGTAAGAAGAAGCCGGCCCCCAGGAAACTCACAATCAAGAAT
GAAGATGTCGTAAAGTATAGAATGGGTGAAATCCAGTTCACTACAGCACA
TTTCAACACCGGCTCATCATTAGAAAGAAGCATCGTTACTAGCACAGGCC
CCTTTGTTGTTGTATGGAACTTCCGCGCAGTTAAGATGGGTCGGTTGGAC
AGCTACAGGATCAGAAGGTATCAAGACAACATTATTGCCGATGACTTTGC
TTACGACAACGATGGACGCATTGTGGTAACATTACCCAATGATGTGAGTG
TCGCCAGAAGGTAG