Ggra1372.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1372.t1
Unique Name	Ggra1372.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:396331..397926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1372	Ggra1372	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 396331..397926 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1372.t1.start1	Ggra1372.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 396331..396333 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1372.t1.CDS1	Ggra1372.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 396331..397926 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1372.t1.exon1	Ggra1372.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 396331..397926 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1372.t1.stop1	Ggra1372.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 397924..397926 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1372.t1	Ggra1372.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 396331..397926 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:396331..397926+
coding sequence from alignment at tig00000092_pilon:396331..397926+

mRNA sequence

>Ggra1372.t1 ID=Ggra1372.t1|Name=Ggra1372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MPPRRRAVELRAARAPWTVSRCAQRPVTSAARGARSRSGAVQVALSTWRR
ASAAWRTCRAPTATSRAALCVSTRRRRWVSPQPDAPSAIMDEDAVAGGGS
GGGSGGDGGGGGGSSSSCAGAFAPRALQAALTHATYAAVAPMLPALRVRA
ALRAAIALWLFTVAALAPRRVPRVAALAAPLAPLLVALRAPVELALLVAG
AAAVAQQRALVERAAPRHMLATRLALLHSAIAAAAVVAPPLAAATVAWPW
LLFALLAAVHLGLLPTTLRSVRKEMHGEATPRHALPAHVSSPFPSFRRHP
RLVLVLLTMFASAATSSFLRPLLAVHLVDVHNNSSVMFVALLFSLHAVAA
FLAETLVPPMLSQQIGLRSAVLIGVLTSLAGFAFVHHAFLVTGVFFVALG
SSTSLVLAVSDLAATTNQTLTSVSDPIAVLASRTFSLGEGFGILLAGALA
QSLGFSFAVMVWYRVLIVVAVLAIVPHVLAALIACCKPFSFLVATSMSSS
LAVDESTPLLSTPASDDPPSTVTLDSDFSRV*

spliced messenger RNA

>Ggra1372.t1 ID=Ggra1372.t1|Name=Ggra1372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000092_pilon:396331..397926+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCGGCGCAGAGCCGTTGAGCTACGAGCTGCGCGCGCGCCGTG
GACAGTGAGCCGTTGCGCGCAGCGGCCCGTTACATCCGCCGCTCGCGGCG
CTCGCTCGCGCAGTGGCGCCGTGCAAGTGGCGCTGTCCACGTGGCGCCGC
GCCAGTGCCGCGTGGCGCACGTGCCGTGCGCCAACAGCAACAAGTCGTGC
CGCGCTTTGCGTATCGACGCGGAGGCGCCGCTGGGTCTCGCCGCAGCCGG
ACGCACCGAGCGCCATCATGGACGAAGACGCCGTGGCcggcggcggcagc
ggcggcggcagcggcggcgacggcggcggcggcggTGGCAGCAGCAGCAG
CTGCGCGGGCGCCTTCGCGCCGCGCGCGCTGCAGGCCGCGCTCACGCACG
CGACGTACGCCGCCGTGGCGCCCATGCTGCCGGCGCTGCGCGTGCGCGCC
GCGCTGCGCGCCGCCATCGCGCTGTGGCTCTTCACCGTCGCCGCGCTGGC
GCCGCGCCGCGTGCCGCGCGTCGCCGCGCTCGCCGCGCCGCTGGCGCCGC
TGCTGGTCGCGCTGCGCGCGCCCGTCGAGCTCGCGCTGCTCGTGGCCGGC
GCCGCCGCCGTCGCGCAGCAGCGCGCGCTGGTGGAGCGCGCCGCGCCCAG
ACACATGTTGGCCACGCGCTTGGCGCTGCTGCACTCGGCCATTGCGGCCG
CGGCGGTTGTGGCGCCGCCACTGGCGGCTGCTACCGTCGCGTGGCCGTGG
CTGCTGTTCGCGCTGTTGGCGGCCGTGCATTTGGGCTTGTTGCCGACGAC
GCTTCGCTCCGTGAGGAAGGAGATGCATGGCGAGGCGACGCCACGCCACG
CGCTGCCTGCGCATGTTTCGTCGCCGTTTCCGTCGTTTCGCCGCCACCCG
CGGCTAGTTTTGGTGCTGCTCACCATGTTTGCCTCCGCCGCCACGTCGTC
GTTCCTGCGCCCGCTGCTGGCCGTGCATCTCGTCGACGTGCACAATAACA
GCTCGGTTATGTTTGTGGCGTTGCTCTTCTCGTTGCATGCGGTGGCGGCC
TTTCTGGCGGAGACGCTTGTGCCGCCCATGCTCAGTCAGCAGATTGGGCT
ACGATCCGCCGTGCTTATTGGCGTGCTTACTTCCTTGGCGGGCTTTGCCT
TTGTGCATCATGCCTTTCTTGTCACGGGCGTGTTCTTCGTTGCATTGGGT
TCCTCCACTTCACTCGTGCTCGCCGTGTCCGACCTCGCCGCTACCACCAA
CCAGACCCTCACCTCCGTCTCCGACCCGATTGCAGTGCTGGCGTCGCGCA
CCTTCTCGCTGGGCGAGGGGTTTGGCATCTTGCTGGCCGGCGCGCTTGCG
CAGTCGCTCGGCTTTTCGTTCGCCGTCATGGTGTGGTATAGGGTGCTCAT
CGTGGTGGCCGTTCTTGCCATTGTGCCGCATGTGCTGGCGGCGCTTATTG
CGTGTTGTAAGCCGTTTAGCTTTCTTGTGGCTACTAGCATGTCTTCTTCT
CTCGCTGTCGATGAGAGCACGCCCTTGTTGTCTACGCCCGCTTCTGATGA
TCCGCCGTCTACTGTTACGCTCGATTCTGACTTTTCTCGCGTTTGA

protein sequence of Ggra1372.t1

>Ggra1372.t1 ID=Ggra1372.t1|Name=Ggra1372.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MPPRRRAVELRAARAPWTVSRCAQRPVTSAARGARSRSGAVQVALSTWRR
ASAAWRTCRAPTATSRAALCVSTRRRRWVSPQPDAPSAIMDEDAVAGGGS
GGGSGGDGGGGGGSSSSCAGAFAPRALQAALTHATYAAVAPMLPALRVRA
ALRAAIALWLFTVAALAPRRVPRVAALAAPLAPLLVALRAPVELALLVAG
AAAVAQQRALVERAAPRHMLATRLALLHSAIAAAAVVAPPLAAATVAWPW
LLFALLAAVHLGLLPTTLRSVRKEMHGEATPRHALPAHVSSPFPSFRRHP
RLVLVLLTMFASAATSSFLRPLLAVHLVDVHNNSSVMFVALLFSLHAVAA
FLAETLVPPMLSQQIGLRSAVLIGVLTSLAGFAFVHHAFLVTGVFFVALG
SSTSLVLAVSDLAATTNQTLTSVSDPIAVLASRTFSLGEGFGILLAGALA
QSLGFSFAVMVWYRVLIVVAVLAIVPHVLAALIACCKPFSFLVATSMSSS
LAVDESTPLLSTPASDDPPSTVTLDSDFSRV*

mRNA from alignment at tig00000092_pilon:396331..397926+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1372.t1 ID=Ggra1372.t1|Name=Ggra1372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000092_pilon:396331..397926+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGCGGCGCAGAGCCGTTGAGCTACGAGCTGCGCGCGCGCCGTG
GACAGTGAGCCGTTGCGCGCAGCGGCCCGTTACATCCGCCGCTCGCGGCG
CTCGCTCGCGCAGTGGCGCCGTGCAAGTGGCGCTGTCCACGTGGCGCCGC
GCCAGTGCCGCGTGGCGCACGTGCCGTGCGCCAACAGCAACAAGTCGTGC
CGCGCTTTGCGTATCGACGCGGAGGCGCCGCTGGGTCTCGCCGCAGCCGG
ACGCACCGAGCGCCATCATGGACGAAGACGCCGTGGCcggcggcggcagc
ggcggcggcagcggcggcgacggcggcggcggcggTGGCAGCAGCAGCAG
CTGCGCGGGCGCCTTCGCGCCGCGCGCGCTGCAGGCCGCGCTCACGCACG
CGACGTACGCCGCCGTGGCGCCCATGCTGCCGGCGCTGCGCGTGCGCGCC
GCGCTGCGCGCCGCCATCGCGCTGTGGCTCTTCACCGTCGCCGCGCTGGC
GCCGCGCCGCGTGCCGCGCGTCGCCGCGCTCGCCGCGCCGCTGGCGCCGC
TGCTGGTCGCGCTGCGCGCGCCCGTCGAGCTCGCGCTGCTCGTGGCCGGC
GCCGCCGCCGTCGCGCAGCAGCGCGCGCTGGTGGAGCGCGCCGCGCCCAG
ACACATGTTGGCCACGCGCTTGGCGCTGCTGCACTCGGCCATTGCGGCCG
CGGCGGTTGTGGCGCCGCCACTGGCGGCTGCTACCGTCGCGTGGCCGTGG
CTGCTGTTCGCGCTGTTGGCGGCCGTGCATTTGGGCTTGTTGCCGACGAC
GCTTCGCTCCGTGAGGAAGGAGATGCATGGCGAGGCGACGCCACGCCACG
CGCTGCCTGCGCATGTTTCGTCGCCGTTTCCGTCGTTTCGCCGCCACCCG
CGGCTAGTTTTGGTGCTGCTCACCATGTTTGCCTCCGCCGCCACGTCGTC
GTTCCTGCGCCCGCTGCTGGCCGTGCATCTCGTCGACGTGCACAATAACA
GCTCGGTTATGTTTGTGGCGTTGCTCTTCTCGTTGCATGCGGTGGCGGCC
TTTCTGGCGGAGACGCTTGTGCCGCCCATGCTCAGTCAGCAGATTGGGCT
ACGATCCGCCGTGCTTATTGGCGTGCTTACTTCCTTGGCGGGCTTTGCCT
TTGTGCATCATGCCTTTCTTGTCACGGGCGTGTTCTTCGTTGCATTGGGT
TCCTCCACTTCACTCGTGCTCGCCGTGTCCGACCTCGCCGCTACCACCAA
CCAGACCCTCACCTCCGTCTCCGACCCGATTGCAGTGCTGGCGTCGCGCA
CCTTCTCGCTGGGCGAGGGGTTTGGCATCTTGCTGGCCGGCGCGCTTGCG
CAGTCGCTCGGCTTTTCGTTCGCCGTCATGGTGTGGTATAGGGTGCTCAT
CGTGGTGGCCGTTCTTGCCATTGTGCCGCATGTGCTGGCGGCGCTTATTG
CGTGTTGTAAGCCGTTTAGCTTTCTTGTGGCTACTAGCATGTCTTCTTCT
CTCGCTGTCGATGAGAGCACGCCCTTGTTGTCTACGCCCGCTTCTGATGA
TCCGCCGTCTACTGTTACGCTCGATTCTGACTTTTCTCGCGTTTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:396331..397926+

>Ggra1372.t1 ID=Ggra1372.t1|Name=Ggra1372.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000092_pilon:396331..397926+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGCGGCGCAGAGCCGTTGAGCTACGAGCTGCGCGCGCGCCGTG
GACAGTGAGCCGTTGCGCGCAGCGGCCCGTTACATCCGCCGCTCGCGGCG
CTCGCTCGCGCAGTGGCGCCGTGCAAGTGGCGCTGTCCACGTGGCGCCGC
GCCAGTGCCGCGTGGCGCACGTGCCGTGCGCCAACAGCAACAAGTCGTGC
CGCGCTTTGCGTATCGACGCGGAGGCGCCGCTGGGTCTCGCCGCAGCCGG
ACGCACCGAGCGCCATCATGGACGAAGACGCCGTGGCcggcggcggcagc
ggcggcggcagcggcggcgacggcggcggcggcggTGGCAGCAGCAGCAG
CTGCGCGGGCGCCTTCGCGCCGCGCGCGCTGCAGGCCGCGCTCACGCACG
CGACGTACGCCGCCGTGGCGCCCATGCTGCCGGCGCTGCGCGTGCGCGCC
GCGCTGCGCGCCGCCATCGCGCTGTGGCTCTTCACCGTCGCCGCGCTGGC
GCCGCGCCGCGTGCCGCGCGTCGCCGCGCTCGCCGCGCCGCTGGCGCCGC
TGCTGGTCGCGCTGCGCGCGCCCGTCGAGCTCGCGCTGCTCGTGGCCGGC
GCCGCCGCCGTCGCGCAGCAGCGCGCGCTGGTGGAGCGCGCCGCGCCCAG
ACACATGTTGGCCACGCGCTTGGCGCTGCTGCACTCGGCCATTGCGGCCG
CGGCGGTTGTGGCGCCGCCACTGGCGGCTGCTACCGTCGCGTGGCCGTGG
CTGCTGTTCGCGCTGTTGGCGGCCGTGCATTTGGGCTTGTTGCCGACGAC
GCTTCGCTCCGTGAGGAAGGAGATGCATGGCGAGGCGACGCCACGCCACG
CGCTGCCTGCGCATGTTTCGTCGCCGTTTCCGTCGTTTCGCCGCCACCCG
CGGCTAGTTTTGGTGCTGCTCACCATGTTTGCCTCCGCCGCCACGTCGTC
GTTCCTGCGCCCGCTGCTGGCCGTGCATCTCGTCGACGTGCACAATAACA
GCTCGGTTATGTTTGTGGCGTTGCTCTTCTCGTTGCATGCGGTGGCGGCC
TTTCTGGCGGAGACGCTTGTGCCGCCCATGCTCAGTCAGCAGATTGGGCT
ACGATCCGCCGTGCTTATTGGCGTGCTTACTTCCTTGGCGGGCTTTGCCT
TTGTGCATCATGCCTTTCTTGTCACGGGCGTGTTCTTCGTTGCATTGGGT
TCCTCCACTTCACTCGTGCTCGCCGTGTCCGACCTCGCCGCTACCACCAA
CCAGACCCTCACCTCCGTCTCCGACCCGATTGCAGTGCTGGCGTCGCGCA
CCTTCTCGCTGGGCGAGGGGTTTGGCATCTTGCTGGCCGGCGCGCTTGCG
CAGTCGCTCGGCTTTTCGTTCGCCGTCATGGTGTGGTATAGGGTGCTCAT
CGTGGTGGCCGTTCTTGCCATTGTGCCGCATGTGCTGGCGGCGCTTATTG
CGTGTTGTAAGCCGTTTAGCTTTCTTGTGGCTACTAGCATGTCTTCTTCT
CTCGCTGTCGATGAGAGCACGCCCTTGTTGTCTACGCCCGCTTCTGATGA
TCCGCCGTCTACTGTTACGCTCGATTCTGACTTTTCTCGCGTTTGA