Ggra1370.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1370.t1
Unique NameGgra1370.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:393999..394697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1370Ggra1370Gracilaria gracilis GNS1m malegenetig00000092_pilon 393999..394697 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1370.t1.start1Ggra1370.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 393999..394001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1370.t1.CDS1Ggra1370.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 393999..394697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1370.t1.exon1Ggra1370.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 393999..394697 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1370.t1.stop1Ggra1370.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 394695..394697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1370.t1Ggra1370.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 393999..394697 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1370.t1 ID=Ggra1370.t1|Name=Ggra1370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MRACRRGAVGPLSVALLLLLLLLSLCSPGASLPMASATSALENKCQCDCC
YAVGANGRTDCVPPTATSFDVQTCAKCDVDACSSVFPLTCAQASSIVTSD
CIVRKGWVLEFIPLFFISLSVILVLYGIYKRFDGYHDVPPTDASRHVLND
AVPAYQSMSHAYRTSAMRHARSPSSDAVSAAGRLPEVEQLAADESIALPA
KTSSTTLDPIPEFAPLGAEAVQSEPQSSQTRP*
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spliced messenger RNA

>Ggra1370.t1 ID=Ggra1370.t1|Name=Ggra1370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000092_pilon:393999..394697+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCGTGCCGCCGTGGCGCCGTTGGGCCGCTCTCCGTCGCgctgct
gctgctgctgctgctgctgTCGCTGTGCTCGCCGGGCGCGTCGCTGCCCA
TGGCGTCCGCAACGTCGGCGCTGGAGAATAAGTGCCAGTGCGATTGCTGC
TATGCCGTGGGCGCCAACGGACGCACGGACTGTGTGCCGCCCACCGCCAC
CTCGTTCGATGTGCAAACGTGCGCCAAGTGCGATGTGGACGCGTGCTCGT
CCGTGTTTCCGCTCACGTGCGCGCAGGCGTCGTCCATCGTCACGTCGGAC
TGCATCGTGAGGAAGGGCTGGGTGCTGGAGTTCATCCCGCTGTTCTTCAT
CTCGCTGTCGGTCATTCTGGTGCTTTACGGCATTTACAAGAGGTTTGACG
GCTATCATGACGTGCCGCCCACTGATGCGTCGCGACACGTTTTGAATGAC
GCTGTGCCTGCGTATCAATCCATGTCGCATGCGTATCGGACGTCGGCTAT
GCGGCACGCTAGAAGCCCGTCTAGTGACGCCGTTAGTGCTGCTGGCCGAT
TGCCAGAGGTCGAGCAGCTTGCCGCTGACGAGTCTATCGCGCTGCCGGCG
AAGACGTCGTCCACCACGCTGGATCCCATTCCCGAGTTTGCGCCGCTCGG
CGCCGAAGCTGTACAAAGCGAACCCCAATCATCTCAAACGCGGCCGTAG
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protein sequence of Ggra1370.t1

>Ggra1370.t1 ID=Ggra1370.t1|Name=Ggra1370.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MRACRRGAVGPLSVALLLLLLLLSLCSPGASLPMASATSALENKCQCDCC
YAVGANGRTDCVPPTATSFDVQTCAKCDVDACSSVFPLTCAQASSIVTSD
CIVRKGWVLEFIPLFFISLSVILVLYGIYKRFDGYHDVPPTDASRHVLND
AVPAYQSMSHAYRTSAMRHARSPSSDAVSAAGRLPEVEQLAADESIALPA
KTSSTTLDPIPEFAPLGAEAVQSEPQSSQTRP*
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mRNA from alignment at tig00000092_pilon:393999..394697+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1370.t1 ID=Ggra1370.t1|Name=Ggra1370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000092_pilon:393999..394697+ (Gracilaria gracilis GNS1m male)
ATGCGTGCGTGCCGCCGTGGCGCCGTTGGGCCGCTCTCCGTCGCgctgct
gctgctgctgctgctgctgTCGCTGTGCTCGCCGGGCGCGTCGCTGCCCA
TGGCGTCCGCAACGTCGGCGCTGGAGAATAAGTGCCAGTGCGATTGCTGC
TATGCCGTGGGCGCCAACGGACGCACGGACTGTGTGCCGCCCACCGCCAC
CTCGTTCGATGTGCAAACGTGCGCCAAGTGCGATGTGGACGCGTGCTCGT
CCGTGTTTCCGCTCACGTGCGCGCAGGCGTCGTCCATCGTCACGTCGGAC
TGCATCGTGAGGAAGGGCTGGGTGCTGGAGTTCATCCCGCTGTTCTTCAT
CTCGCTGTCGGTCATTCTGGTGCTTTACGGCATTTACAAGAGGTTTGACG
GCTATCATGACGTGCCGCCCACTGATGCGTCGCGACACGTTTTGAATGAC
GCTGTGCCTGCGTATCAATCCATGTCGCATGCGTATCGGACGTCGGCTAT
GCGGCACGCTAGAAGCCCGTCTAGTGACGCCGTTAGTGCTGCTGGCCGAT
TGCCAGAGGTCGAGCAGCTTGCCGCTGACGAGTCTATCGCGCTGCCGGCG
AAGACGTCGTCCACCACGCTGGATCCCATTCCCGAGTTTGCGCCGCTCGG
CGCCGAAGCTGTACAAAGCGAACCCCAATCATCTCAAACGCGGCCGTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:393999..394697+

>Ggra1370.t1 ID=Ggra1370.t1|Name=Ggra1370.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000092_pilon:393999..394697+ (Gracilaria gracilis GNS1m male)
ATGCGTGCGTGCCGCCGTGGCGCCGTTGGGCCGCTCTCCGTCGCgctgct
gctgctgctgctgctgctgTCGCTGTGCTCGCCGGGCGCGTCGCTGCCCA
TGGCGTCCGCAACGTCGGCGCTGGAGAATAAGTGCCAGTGCGATTGCTGC
TATGCCGTGGGCGCCAACGGACGCACGGACTGTGTGCCGCCCACCGCCAC
CTCGTTCGATGTGCAAACGTGCGCCAAGTGCGATGTGGACGCGTGCTCGT
CCGTGTTTCCGCTCACGTGCGCGCAGGCGTCGTCCATCGTCACGTCGGAC
TGCATCGTGAGGAAGGGCTGGGTGCTGGAGTTCATCCCGCTGTTCTTCAT
CTCGCTGTCGGTCATTCTGGTGCTTTACGGCATTTACAAGAGGTTTGACG
GCTATCATGACGTGCCGCCCACTGATGCGTCGCGACACGTTTTGAATGAC
GCTGTGCCTGCGTATCAATCCATGTCGCATGCGTATCGGACGTCGGCTAT
GCGGCACGCTAGAAGCCCGTCTAGTGACGCCGTTAGTGCTGCTGGCCGAT
TGCCAGAGGTCGAGCAGCTTGCCGCTGACGAGTCTATCGCGCTGCCGGCG
AAGACGTCGTCCACCACGCTGGATCCCATTCCCGAGTTTGCGCCGCTCGG
CGCCGAAGCTGTACAAAGCGAACCCCAATCATCTCAAACGCGGCCGTAG
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